pycom13g29410

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr13
OG0000441
Physical Location & Seq
Forward (+)
26205304 .. 26205959
656 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom13g29410.2

Sequence Viewer

Length: 384 bp
ATGTATGTGGATCCTTATTTCAAAGAGGCAAAAAAATTGCATGTGAAAATTTCTTACTACTTTAAGTACATGAAAGATAGTATTTCAAGAAAGCTCAATAAGAACTCTATTTGCAAACATATCATGAAAGGTGATAAGATCCAGATGTTGTTGCAAACTTATGTTGAGTATCCACTAAAAGCAAACAGCTCATGCTCACAACAATTTCCAAACATGTGGGTGTTAACTTCATATGCATTATTTGAAGGTGTCTTTCCGGCAGAGCCAATGAAGAATATGAAAGCACATGTCCTTTACAGATTCATAAATGGGGGAGAGGGTAGTTGGGAAAAGGAAGAGTCGAATAAAGATGTGATGCGAAATTTGAGTTTTTGTTTCATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

128

Amino Acids

15.04

Weight (kDa)

9.28

Isoelectric Point (pI)

36.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 3 cut(s) 5, 18, 133
AcsI RAATTY 2 cut(s) 48, 361
AfaI GTAC 1 cut(s) 68
AflIII ACRYGT 2 cut(s) 213, 286
AgsI TTSAA 3 cut(s) 22, 87, 245
AluBI AGCT 2 cut(s) 94, 189
AluI AGCT 2 cut(s) 94, 189
AlwI GGATC 3 cut(s) 5, 18, 133
ApoI RAATTY 2 cut(s) 48, 361
AsuHPI GGTGA 1 cut(s) 143
BamHI GGATCC 1 cut(s) 10
BciVI GTATCC 1 cut(s) 180
BfuI GTATCC 1 cut(s) 180
BmiI GGNNCC 1 cut(s) 12
BmsI GCATC 1 cut(s) 345
BsiSI CCGG 1 cut(s) 257
Bsp143I GATC 2 cut(s) 10, 138
BspHI TCATGA 1 cut(s) 123
BspLI GGNNCC 1 cut(s) 12
BspPI GGATC 3 cut(s) 5, 18, 133
BssMI GATC 2 cut(s) 10, 138
Bst6I CTCTTC 1 cut(s) 330
BstKTI GATC 2 cut(s) 13, 141
BstMBI GATC 2 cut(s) 10, 138
BstNSI RCATGY 3 cut(s) 44, 217, 290
BstX2I RGATCY 2 cut(s) 10, 138
BstXI CCANNNNNNTGG 1 cut(s) 216
BstYI RGATCY 2 cut(s) 10, 138
BsuI GTATCC 1 cut(s) 180
CciI TCATGA 1 cut(s) 123
Csp6I GTAC 1 cut(s) 67
CviAII CATG 6 cut(s) 41, 70, 124, 192, 214, 287
CviJI RGCY 3 cut(s) 94, 189, 265
CviKI_1 RGCY 3 cut(s) 94, 189, 265
CviQI GTAC 1 cut(s) 67
DpnI GATC 2 cut(s) 12, 140
DpnII GATC 2 cut(s) 10, 138
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
EcoT22I ATGCAT 1 cut(s) 238
FaeI CATG 6 cut(s) 44, 73, 127, 195, 217, 290
FatI CATG 6 cut(s) 40, 69, 123, 191, 213, 286
FauNDI CATATG 1 cut(s) 232
HapII CCGG 1 cut(s) 257
Hin1II CATG 6 cut(s) 44, 73, 127, 195, 217, 290
HincII GTYRAC 1 cut(s) 225
HindII GTYRAC 1 cut(s) 225
HinfI GANTC 2 cut(s) 300, 338
HpaI GTTAAC 1 cut(s) 225
HpaII CCGG 1 cut(s) 257
HphI GGTGA 1 cut(s) 143
Hpy166II GTNNAC 1 cut(s) 225
Hpy188III TCNNGA 3 cut(s) 87, 124, 142
Hpy8I GTNNAC 1 cut(s) 225
HpyAV CCTTC 1 cut(s) 239
HpyCH4V TGCA 4 cut(s) 40, 114, 154, 236
Hsp92II CATG 6 cut(s) 44, 73, 127, 195, 217, 290
KspAI GTTAAC 1 cut(s) 225
Kzo9I GATC 2 cut(s) 10, 138
LpnPI CCDG 2 cut(s) 155, 270
LweI GCATC 1 cut(s) 345
MalI GATC 2 cut(s) 12, 140
MboI GATC 2 cut(s) 10, 138
MboII GAAGA 2 cut(s) 283, 347
MflI RGATCY 2 cut(s) 10, 138
MluCI AATT 4 cut(s) 35, 48, 203, 361
MlyI GAGTC 1 cut(s) 347
MnlI CCTC 2 cut(s) 19, 310
Mph1103I ATGCAT 1 cut(s) 238
MseI TTAA 3 cut(s) 63, 224, 382
MslI CAYNNNNRTG 1 cut(s) 218
MspI CCGG 1 cut(s) 257
NdeI CATATG 1 cut(s) 232
NdeII GATC 2 cut(s) 10, 138
NlaIII CATG 6 cut(s) 44, 73, 127, 195, 217, 290
NlaIV GGNNCC 1 cut(s) 12
NsiI ATGCAT 1 cut(s) 238
NspI RCATGY 3 cut(s) 44, 217, 290
PagI TCATGA 1 cut(s) 123
PciI ACATGT 2 cut(s) 213, 286
PfeI GAWTC 1 cut(s) 300
PleI GAGTC 1 cut(s) 346
PpsI GAGTC 1 cut(s) 346
PscI ACATGT 2 cut(s) 213, 286
PspN4I GGNNCC 1 cut(s) 12
PsuI RGATCY 2 cut(s) 10, 138
RsaI GTAC 1 cut(s) 68
RsaNI GTAC 1 cut(s) 67
RseI CAYNNNNRTG 1 cut(s) 218
SaqAI TTAA 3 cut(s) 63, 224, 382
Sau3AI GATC 2 cut(s) 10, 138
SchI GAGTC 1 cut(s) 347
SetI ASST 4 cut(s) 96, 133, 191, 250
SfaNI GCATC 1 cut(s) 345
SgeI CNNG 9 cut(s) 53, 82, 99, 136, 154, 204, 226, 269, 299
SmiMI CAYNNNNRTG 1 cut(s) 218
Sse9I AATT 4 cut(s) 35, 48, 203, 361
TaqI TCGA 1 cut(s) 341
TasI AATT 4 cut(s) 35, 48, 203, 361
TatI WGTACW 1 cut(s) 66
TfiI GAWTC 1 cut(s) 300
Tru1I TTAA 3 cut(s) 63, 224, 382
Tru9I TTAA 3 cut(s) 63, 224, 382
TspDTI ATGAA 7 cut(s) 86, 140, 219, 284, 292, 293, 367
XapI RAATTY 2 cut(s) 48, 361
XceI RCATGY 3 cut(s) 44, 217, 290
Zsp2I ATGCAT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.