Rh5DG250200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000441
Physical Location & Seq
Forward (+)
28851708 .. 28852028
321 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG250200.1

Sequence Viewer

Length: 321 bp
ATGGAGATAGGATTGCTCAGGCAAGCCATTCCTAAAGATGAGATTCCAAATGGGAATTCAAGGAAGTTGAGGACAAAAGAACTATGTAAAAAACCATCATTCCTTGAAGGTTATATCATTGGCGACATTAGAGCCAAAAGAGGTAAGGAAAAGATCATTGATGAAATAGGTGATGCTGTTGTGGAAGAACCAGCTGTGAAGAAGGAAAAGAAACAGATTGTTGCGCAACAAATAGGTGTGAGAAGGTTAAGGGTTGGAAAGTGTATGTCCCAGGTACATGCAGAAAAGCTCAAGGAATATTTGTCCAAAGCTAGCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

12.03

Weight (kDa)

9.82

Isoelectric Point (pI)

43.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 225
Acc36I ACCTGC 1 cut(s) 306
AcsI RAATTY 1 cut(s) 55
AfaI GTAC 1 cut(s) 276
AgsI TTSAA 2 cut(s) 60, 107
AjnI CCWGG 1 cut(s) 270
AjuI GAANNNNNNNTTGG 2 cut(s) 40, 72
AluBI AGCT 3 cut(s) 194, 289, 311
AluI AGCT 3 cut(s) 194, 289, 311
ApoI RAATTY 1 cut(s) 55
AspLEI GCGC 1 cut(s) 226
AsuHPI GGTGA 1 cut(s) 182
AsuNHI GCTAGC 1 cut(s) 311
BccI CCATC 1 cut(s) 103
BciT130I CCWGG 1 cut(s) 272
BfaI CTAG 1 cut(s) 312
BfuAI ACCTGC 1 cut(s) 306
Bme1390I CCNGG 1 cut(s) 272
BmrFI CCNGG 1 cut(s) 272
BmsI GCATC 1 cut(s) 163
BmtI GCTAGC 1 cut(s) 315
Bpu10I CCTNAGC 1 cut(s) 17
BpuEI CTTGAG 1 cut(s) 275
BsaJI CCNNGG 1 cut(s) 270
BseBI CCWGG 1 cut(s) 272
BseDI CCNNGG 1 cut(s) 270
BseMII CTCAG 1 cut(s) 31
BslFI GGGAC 1 cut(s) 253
BsmFI GGGAC 1 cut(s) 253
Bsp143I GATC 1 cut(s) 153
BspCNI CTCAG 1 cut(s) 30
BspMI ACCTGC 1 cut(s) 306
BspOI GCTAGC 1 cut(s) 315
BssECI CCNNGG 1 cut(s) 270
BssMI GATC 1 cut(s) 153
Bst2UI CCWGG 1 cut(s) 272
BstC8I GCNNGC 2 cut(s) 24, 313
BstDEI CTNAG 1 cut(s) 17
BstHHI GCGC 1 cut(s) 226
BstKTI GATC 1 cut(s) 156
BstMBI GATC 1 cut(s) 153
BstNI CCWGG 1 cut(s) 272
BstNSI RCATGY 1 cut(s) 281
BstSCI CCNGG 1 cut(s) 270
BveI ACCTGC 1 cut(s) 306
Cac8I GCNNGC 2 cut(s) 24, 313
CfoI GCGC 1 cut(s) 226
Csp6I GTAC 1 cut(s) 275
CviAII CATG 1 cut(s) 278
CviJI RGCY 5 cut(s) 26, 134, 194, 289, 311
CviKI_1 RGCY 5 cut(s) 26, 134, 194, 289, 311
CviQI GTAC 1 cut(s) 275
DdeI CTNAG 1 cut(s) 17
DpnI GATC 1 cut(s) 155
DpnII GATC 1 cut(s) 153
EcoRI GAATTC 1 cut(s) 55
EcoRII CCWGG 1 cut(s) 270
FaeI CATG 1 cut(s) 281
FaiI YATR 4 cut(s) 85, 114, 266, 279
FaqI GGGAC 1 cut(s) 253
FatI CATG 1 cut(s) 277
FspBI CTAG 1 cut(s) 312
FspI TGCGCA 1 cut(s) 225
GlaI GCGC 1 cut(s) 225
HhaI GCGC 1 cut(s) 226
Hin1II CATG 1 cut(s) 281
Hin6I GCGC 1 cut(s) 224
HinP1I GCGC 1 cut(s) 224
HinfI GANTC 1 cut(s) 43
HphI GGTGA 1 cut(s) 182
HpyAV CCTTC 3 cut(s) 101, 196, 237
HpyCH4V TGCA 1 cut(s) 281
HpyF3I CTNAG 1 cut(s) 17
Hsp92II CATG 1 cut(s) 281
HspAI GCGC 1 cut(s) 224
Kzo9I GATC 1 cut(s) 153
LpnPI CCDG 5 cut(s) 4, 204, 257, 284, 301
LweI GCATC 1 cut(s) 163
MaeI CTAG 1 cut(s) 312
MalI GATC 1 cut(s) 155
MboI GATC 1 cut(s) 153
MboII GAAGA 2 cut(s) 197, 211
MluCI AATT 1 cut(s) 55
MmeI TCCRAC 1 cut(s) 235
MnlI CCTC 2 cut(s) 63, 134
MseI TTAA 1 cut(s) 248
MspA1I CMGCKG 1 cut(s) 194
MspR9I CCNGG 1 cut(s) 272
MvaI CCWGG 1 cut(s) 272
NdeII GATC 1 cut(s) 153
NheI GCTAGC 1 cut(s) 311
NlaIII CATG 1 cut(s) 281
NsbI TGCGCA 1 cut(s) 225
NspI RCATGY 1 cut(s) 281
PfeI GAWTC 1 cut(s) 43
Psp6I CCWGG 1 cut(s) 270
PspGI CCWGG 1 cut(s) 270
PvuII CAGCTG 1 cut(s) 194
RsaI GTAC 1 cut(s) 276
RsaNI GTAC 1 cut(s) 275
SaqAI TTAA 1 cut(s) 248
Sau3AI GATC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 272
SfaNI GCATC 1 cut(s) 163
SgeI CNNG 9 cut(s) 31, 35, 72, 116, 203, 283, 284, 290, 304
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 1 cut(s) 55
SspI AATATT 1 cut(s) 299
SspMI CTAG 1 cut(s) 312
StyD4I CCNGG 1 cut(s) 270
TasI AATT 1 cut(s) 55
TfiI GAWTC 1 cut(s) 43
Tru1I TTAA 1 cut(s) 248
Tru9I TTAA 1 cut(s) 248
TspDTI ATGAA 1 cut(s) 177
XapI RAATTY 1 cut(s) 55
XceI RCATGY 1 cut(s) 281
XspI CTAG 1 cut(s) 312
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.