pycom06g12090

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000441
Physical Location & Seq
Forward (+)
17262134 .. 17263333
1200 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g12090.1

Sequence Viewer

Length: 480 bp
ATGAAAGCTATAAAATTTCTCCCAGTATATGATGAAAACAGAATAGGTGAAGATCTGGTTCTGGCCTCCCGGTATACCTGGAGAACAGCCGAAGATGTTTTGCATGAAGAGAAAAAAAAAAAGATAAGCCTGGAGTACAGGTCTGACCTTTTGAAGTTTCGTCGCGTTATGGAAGAAATGAGACTTAGTGTGACAAATGCGCATCTTGAGTTAATGAATCGTACACCGTTCGGGAGGTTGTTCCAAGCGTACCATGAGAATTTGATCATTGATGGTGTTTGCAAGAAATGTGATGCGAATATTGTGTCCATATTGAAGTGCTACGACTCAGTACAAAAAGCATTTGTTTTTGGTGGAATAACTGCCAAAGATATATCTGAGATTTTTGGGTTGCCTGATGAAGGGGAAGAGATTAACCTGAATAGTAGGAAAAGAAAAGGTGCGTTACAGGTTTTTATGAGAGATATCTTGCAGACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

160

Amino Acids

18.48

Weight (kDa)

8.39

Isoelectric Point (pI)

41.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 201
AccI GTMKAC 1 cut(s) 74
AccII CGCG 1 cut(s) 165
AcsI RAATTY 2 cut(s) 14, 259
AfaI GTAC 4 cut(s) 137, 223, 251, 333
AfiI CCNNNNNNNGG 1 cut(s) 401
AgsI TTSAA 2 cut(s) 154, 316
AjiI CACGTC 1 cut(s) 477
AjnI CCWGG 2 cut(s) 77, 129
AluBI AGCT 1 cut(s) 8
AluI AGCT 1 cut(s) 8
Alw26I GTCTC 1 cut(s) 175
AoxI GGCC 1 cut(s) 63
ApoI RAATTY 2 cut(s) 14, 259
ArsI GACNNNNNNTTYG 2 cut(s) 290, 322
AspLEI GCGC 1 cut(s) 202
AsuC2I CCSGG 1 cut(s) 70
AsuHPI GGTGA 1 cut(s) 59
BccI CCATC 1 cut(s) 266
BciT130I CCWGG 2 cut(s) 79, 131
BclI TGATCA 1 cut(s) 264
BcnI CCSGG 1 cut(s) 70
BcoDI GTCTC 1 cut(s) 175
BglII AGATCT 1 cut(s) 52
Bme1390I CCNGG 3 cut(s) 70, 79, 131
BmgBI CACGTC 1 cut(s) 477
BmrFI CCNGG 3 cut(s) 70, 79, 131
BmrI ACTGGG 1 cut(s) 17
BmsI GCATC 2 cut(s) 211, 283
BmuI ACTGGG 1 cut(s) 17
BpmI CTGGAG 2 cut(s) 100, 152
BpuEI CTTGAG 1 cut(s) 227
BpuMI CCSGG 1 cut(s) 70
BsaXI ACNNNNNCTCC 2 cut(s) 125, 155
Bsc4I CCNNNNNNNGG 1 cut(s) 401
Bse1I ACTGG 1 cut(s) 23
BseBI CCWGG 2 cut(s) 79, 131
BseLI CCNNNNNNNGG 1 cut(s) 401
BseMII CTCAG 2 cut(s) 342, 369
BseNI ACTGG 1 cut(s) 23
Bsh1236I CGCG 1 cut(s) 165
BshFI GGCC 1 cut(s) 65
BsiSI CCGG 1 cut(s) 70
BslI CCNNNNNNNGG 1 cut(s) 401
BsmAI GTCTC 1 cut(s) 175
BsnI GGCC 1 cut(s) 65
Bsp143I GATC 2 cut(s) 52, 264
BspANI GGCC 1 cut(s) 65
BspCNI CTCAG 2 cut(s) 341, 370
BspFNI CGCG 1 cut(s) 165
BsrI ACTGG 1 cut(s) 23
BssMI GATC 2 cut(s) 52, 264
BssNAI GTATAC 1 cut(s) 75
Bst1107I GTATAC 1 cut(s) 75
Bst2UI CCWGG 2 cut(s) 79, 131
Bst4CI ACNGT 1 cut(s) 228
Bst6I CTCTTC 2 cut(s) 102, 402
BstDEI CTNAG 3 cut(s) 185, 328, 378
BstENI CCTNNNNNAGG 1 cut(s) 399
BstFNI CGCG 1 cut(s) 165
BstHHI GCGC 1 cut(s) 202
BstKTI GATC 2 cut(s) 55, 267
BstMAI GTCTC 1 cut(s) 175
BstMBI GATC 2 cut(s) 52, 264
BstNI CCWGG 2 cut(s) 79, 131
BstSCI CCNGG 3 cut(s) 68, 77, 129
BstUI CGCG 1 cut(s) 165
BstX2I RGATCY 1 cut(s) 52
BstYI RGATCY 1 cut(s) 52
BstZ17I GTATAC 1 cut(s) 75
BsuRI GGCC 1 cut(s) 65
BtrI CACGTC 1 cut(s) 477
CfoI GCGC 1 cut(s) 202
Csp6I GTAC 4 cut(s) 136, 222, 250, 332
CviAII CATG 2 cut(s) 104, 254
CviJI RGCY 4 cut(s) 8, 65, 89, 129
CviKI_1 RGCY 4 cut(s) 8, 65, 89, 129
CviQI GTAC 4 cut(s) 136, 222, 250, 332
DdeI CTNAG 3 cut(s) 185, 328, 378
DpnI GATC 2 cut(s) 54, 266
DpnII GATC 2 cut(s) 52, 264
Eam1104I CTCTTC 2 cut(s) 102, 402
EarI CTCTTC 2 cut(s) 102, 402
Eco32I GATATC 1 cut(s) 466
EcoNI CCTNNNNNAGG 1 cut(s) 399
EcoRII CCWGG 2 cut(s) 77, 129
EcoRV GATATC 1 cut(s) 466
FaeI CATG 2 cut(s) 107, 257
FatI CATG 2 cut(s) 103, 253
FbaI TGATCA 1 cut(s) 264
FblI GTMKAC 1 cut(s) 74
FspAI RTGCGCAY 1 cut(s) 201
FspI TGCGCA 1 cut(s) 201
GlaI GCGC 1 cut(s) 201
GsuI CTGGAG 2 cut(s) 100, 152
HaeIII GGCC 1 cut(s) 65
HapII CCGG 1 cut(s) 70
HhaI GCGC 1 cut(s) 202
Hin1II CATG 2 cut(s) 107, 257
Hin6I GCGC 1 cut(s) 200
HinP1I GCGC 1 cut(s) 200
HinfI GANTC 2 cut(s) 217, 326
HpaII CCGG 1 cut(s) 70
HphI GGTGA 1 cut(s) 59
Hpy166II GTNNAC 2 cut(s) 75, 224
Hpy188I TCNGA 2 cut(s) 145, 379
Hpy188III TCNNGA 2 cut(s) 206, 232
Hpy8I GTNNAC 2 cut(s) 75, 224
Hpy99I CGWCG 1 cut(s) 165
HpyAV CCTTC 1 cut(s) 395
HpyCH4III ACNGT 1 cut(s) 228
HpyCH4IV ACGT 1 cut(s) 476
HpyCH4V TGCA 3 cut(s) 103, 282, 472
HpyF3I CTNAG 3 cut(s) 185, 328, 378
HpySE526I ACGT 1 cut(s) 476
Hsp92II CATG 2 cut(s) 107, 257
HspAI GCGC 1 cut(s) 200
Ksp22I TGATCA 1 cut(s) 264
Kzo9I GATC 2 cut(s) 52, 264
LweI GCATC 2 cut(s) 211, 283
MaeII ACGT 1 cut(s) 476
MaeIII GTNAC 2 cut(s) 190, 444
MalI GATC 2 cut(s) 54, 266
MboI GATC 2 cut(s) 52, 264
MboII GAAGA 5 cut(s) 62, 104, 119, 185, 419
MflI RGATCY 1 cut(s) 52
MluCI AATT 2 cut(s) 14, 259
MlyI GAGTC 1 cut(s) 320
MnlI CCTC 2 cut(s) 76, 228
MseI TTAA 2 cut(s) 212, 414
MspI CCGG 1 cut(s) 70
MspR9I CCNGG 3 cut(s) 70, 79, 131
MvaI CCWGG 2 cut(s) 79, 131
MvnI CGCG 1 cut(s) 165
NciI CCSGG 1 cut(s) 70
NdeII GATC 2 cut(s) 52, 264
NlaIII CATG 2 cut(s) 107, 257
NmuCI GTSAC 1 cut(s) 190
NsbI TGCGCA 1 cut(s) 201
PfeI GAWTC 1 cut(s) 217
PleI GAGTC 1 cut(s) 320
PpsI GAGTC 1 cut(s) 320
Psp6I CCWGG 2 cut(s) 77, 129
PspGI CCWGG 2 cut(s) 77, 129
PsuI RGATCY 1 cut(s) 52
RsaI GTAC 4 cut(s) 137, 223, 251, 333
RsaNI GTAC 4 cut(s) 136, 222, 250, 332
SaqAI TTAA 2 cut(s) 212, 414
Sau3AI GATC 2 cut(s) 52, 264
SchI GAGTC 1 cut(s) 320
ScrFI CCNGG 3 cut(s) 70, 79, 131
SfaNI GCATC 2 cut(s) 211, 283
SmlI CTYRAG 1 cut(s) 206
SmoI CTYRAG 1 cut(s) 206
Sse9I AATT 2 cut(s) 14, 259
SspI AATATT 1 cut(s) 301
StyD4I CCNGG 3 cut(s) 68, 77, 129
TaaI ACNGT 1 cut(s) 228
TaiI ACGT 1 cut(s) 479
TasI AATT 2 cut(s) 14, 259
TatI WGTACW 2 cut(s) 135, 331
TfiI GAWTC 1 cut(s) 217
Tru1I TTAA 2 cut(s) 212, 414
Tru9I TTAA 2 cut(s) 212, 414
TseFI GTSAC 1 cut(s) 190
Tsp45I GTSAC 1 cut(s) 190
TspDTI ATGAA 5 cut(s) 17, 48, 120, 230, 414
XagI CCTNNNNNAGG 1 cut(s) 399
XapI RAATTY 2 cut(s) 14, 259
XmiI GTMKAC 1 cut(s) 74
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.