Rh1BG004100

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000441
Physical Location & Seq
Forward (+)
623105 .. 623389
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG004100.1

Sequence Viewer

Length: 285 bp
ATGACCGACGAGTTAATGGCAGAAATTACTGAAGTGAAGCTTGATCTGATAGAGTCCACACCGTTCATGGATTTGTTTAGAGCTTTTTATGAGCGGCAAATAATAGACTCTGCTTGTAGGAAGTCTGATAGTGACATCGTATCTCTTTTAAAATGCTTTGACAAGGAAAAAAACTCGTTTCAGTTTGGGGAAATTACTGGTACCATATCTGTAGGTGACATTGCAGAACTGTTTGGTTTGAATATTGAAGCCTGGAGCAACAAATCAAAGATGTATCTAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

94

Amino Acids

10.76

Weight (kDa)

4.44

Isoelectric Point (pI)

50.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 200
AccB1I GGYRCC 1 cut(s) 200
AccBSI CCGCTC 1 cut(s) 94
AciI CCGC 1 cut(s) 94
AcuI CTGAAG 1 cut(s) 51
AfaI GTAC 1 cut(s) 202
AgsI TTSAA 2 cut(s) 241, 248
AjnI CCWGG 1 cut(s) 251
AluBI AGCT 2 cut(s) 40, 83
AluI AGCT 2 cut(s) 40, 83
Asp718I GGTACC 1 cut(s) 200
AsuHPI GGTGA 1 cut(s) 227
BanI GGYRCC 1 cut(s) 200
BciT130I CCWGG 1 cut(s) 253
BfmI CTRYAG 1 cut(s) 210
BisI GCNGC 1 cut(s) 95
BlsI GCNGC 1 cut(s) 96
Bme1390I CCNGG 1 cut(s) 253
BmiI GGNNCC 1 cut(s) 202
BmrFI CCNGG 1 cut(s) 253
BpmI CTGGAG 1 cut(s) 274
Bse1I ACTGG 1 cut(s) 202
Bse3DI GCAATG 1 cut(s) 219
BseBI CCWGG 1 cut(s) 253
BseMI GCAATG 1 cut(s) 219
BseNI ACTGG 1 cut(s) 202
BshNI GGYRCC 1 cut(s) 200
Bsp143I GATC 1 cut(s) 43
BspACI CCGC 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 202
BspT107I GGYRCC 1 cut(s) 200
BsrBI CCGCTC 1 cut(s) 94
BsrDI GCAATG 1 cut(s) 219
BsrI ACTGG 1 cut(s) 202
BssMI GATC 1 cut(s) 43
Bst2UI CCWGG 1 cut(s) 253
Bst4CI ACNGT 2 cut(s) 63, 231
BstKTI GATC 1 cut(s) 46
BstMBI GATC 1 cut(s) 43
BstNI CCWGG 1 cut(s) 253
BstSCI CCNGG 1 cut(s) 251
BstSFI CTRYAG 1 cut(s) 210
Csp6I GTAC 1 cut(s) 201
CviAII CATG 1 cut(s) 67
CviJI RGCY 3 cut(s) 40, 83, 251
CviKI_1 RGCY 3 cut(s) 40, 83, 251
CviQI GTAC 1 cut(s) 201
DpnI GATC 1 cut(s) 45
DpnII GATC 1 cut(s) 43
DraI TTTAAA 1 cut(s) 150
Eco57I CTGAAG 1 cut(s) 51
EcoRII CCWGG 1 cut(s) 251
FaeI CATG 1 cut(s) 70
FaiI YATR 3 cut(s) 68, 90, 206
FalI AAGNNNNNCTT 2 cut(s) 24, 56
FatI CATG 1 cut(s) 66
Fnu4HI GCNGC 1 cut(s) 95
Fsp4HI GCNGC 1 cut(s) 95
GluI GCNGC 1 cut(s) 95
GsuI CTGGAG 1 cut(s) 274
Hin1II CATG 1 cut(s) 70
HindIII AAGCTT 1 cut(s) 38
HinfI GANTC 2 cut(s) 53, 107
HphI GGTGA 1 cut(s) 227
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 2 cut(s) 48, 127
Hpy8I GTNNAC 1 cut(s) 57
Hpy99I CGWCG 1 cut(s) 11
HpyCH4III ACNGT 2 cut(s) 63, 231
HpyCH4V TGCA 1 cut(s) 224
Hsp92II CATG 1 cut(s) 70
KpnI GGTACC 1 cut(s) 204
Kzo9I GATC 1 cut(s) 43
LmnI GCTCC 1 cut(s) 255
LpnPI CCDG 3 cut(s) 183, 238, 265
MaeIII GTNAC 2 cut(s) 131, 215
MalI GATC 1 cut(s) 45
MbiI CCGCTC 1 cut(s) 94
MboI GATC 1 cut(s) 43
MluCI AATT 2 cut(s) 24, 192
MlyI GAGTC 2 cut(s) 62, 101
MseI TTAA 2 cut(s) 14, 149
MspR9I CCNGG 1 cut(s) 253
MvaI CCWGG 1 cut(s) 253
NdeII GATC 1 cut(s) 43
NlaIII CATG 1 cut(s) 70
NlaIV GGNNCC 1 cut(s) 202
NmuCI GTSAC 2 cut(s) 131, 215
PkrI GCNGC 1 cut(s) 96
PleI GAGTC 2 cut(s) 61, 101
PpsI GAGTC 2 cut(s) 61, 101
Psp6I CCWGG 1 cut(s) 251
PspGI CCWGG 1 cut(s) 251
PspN4I GGNNCC 1 cut(s) 202
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
SaqAI TTAA 2 cut(s) 14, 149
SatI GCNGC 1 cut(s) 95
Sau3AI GATC 1 cut(s) 43
SchI GAGTC 2 cut(s) 62, 101
ScrFI CCNGG 1 cut(s) 253
SetI ASST 3 cut(s) 42, 85, 217
SfcI CTRYAG 1 cut(s) 210
SgeI CNNG 9 cut(s) 22, 53, 79, 126, 175, 187, 210, 264, 265
Sse9I AATT 2 cut(s) 24, 192
SsiI CCGC 1 cut(s) 94
SspI AATATT 1 cut(s) 244
StyD4I CCNGG 1 cut(s) 251
TaaI ACNGT 2 cut(s) 63, 231
TaqII GACCGA 1 cut(s) 20
TasI AATT 2 cut(s) 24, 192
TauI GCSGC 1 cut(s) 97
Tru1I TTAA 2 cut(s) 14, 149
Tru9I TTAA 2 cut(s) 14, 149
TseFI GTSAC 2 cut(s) 131, 215
Tsp45I GTSAC 2 cut(s) 131, 215
TspDTI ATGAA 1 cut(s) 55
XcmI CCANNNNNNNNNTGG 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.