RLG00000032897

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000441
Physical Location & Seq
Reverse (-)
20585141 .. 20586874
1734 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000032897

Sequence Viewer

Length: 534 bp
ATGGTTGCAAAACAAATCCTACTCGCTCACCTAGTTCCTCCTCTGAAGGTGTTTCCTGAAGTCATCTGGGTACCGGTATCAAAGCCCACTAGCGAGGCCTACAAACCTTGCACTAGACCCACCATCGTGGCATCACCGGTTCCGTCGCACTACCTCCAGACCACCACCACCCTAGTTAGTCCACCGCCGGCGCTCCACCATCGTCGCCTCATGCACCAAGGTCTCCATCAAGGAGTGCTCGCAGAGAAAGCCGGAAAAGATCCCGTACAGCCCGGATCCGGGCTGCTCTCACGAGCAGGCCTCGATGTCGACCTCAGCCACCCCCCAATGAACGAAGGAGAACCCAGCCCTTTCGCCATAGCACCACCACCAAACACCAACCAAATTGCCCAGATCCGACCGCCCTCCATCATCACTTCGACTAGATCACCCGCGACCCAAACCGGATCAACCAATGGCAGCCACCATCCAAACCATATCCAACCACCGCTAGCAGCCATCAAGCATCGAAACGACCCACTCACACGTCACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

19.05

Weight (kDa)

9.91

Isoelectric Point (pI)

63.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 70
AccB1I GGYRCC 1 cut(s) 70
AccI GTMKAC 1 cut(s) 309
AccII CGCG 1 cut(s) 434
AciI CCGC 4 cut(s) 185, 401, 432, 488
AclWI GGATC 5 cut(s) 254, 270, 283, 388, 454
AcuI CTGAAG 2 cut(s) 65, 78
AfaI GTAC 2 cut(s) 72, 267
AfiI CCNNNNNNNGG 2 cut(s) 278, 279
AflIII ACRYGT 1 cut(s) 524
AgeI ACCGGT 2 cut(s) 73, 136
AjiI CACGTC 1 cut(s) 527
AleI CACNNNNGTG 1 cut(s) 125
Alw21I GWGCWC 1 cut(s) 240
Alw26I GTCTC 1 cut(s) 227
AlwI GGATC 5 cut(s) 254, 270, 283, 388, 454
AoxI GGCC 2 cut(s) 96, 298
ApeKI GCWGC 3 cut(s) 283, 459, 494
AsiGI ACCGGT 2 cut(s) 73, 136
Asp718I GGTACC 1 cut(s) 70
AspLEI GCGC 1 cut(s) 193
AsuC2I CCSGG 2 cut(s) 273, 280
AsuHPI GGTGA 3 cut(s) 20, 126, 420
AsuNHI GCTAGC 1 cut(s) 490
BamHI GGATCC 1 cut(s) 275
BanI GGYRCC 1 cut(s) 70
BauI CACGAG 1 cut(s) 291
Bbv12I GWGCWC 1 cut(s) 240
BbvCI CCTCAGC 1 cut(s) 314
BbvI GCAGC 3 cut(s) 270, 471, 506
BccI CCATC 6 cut(s) 131, 207, 234, 416, 474, 506
BcnI CCSGG 2 cut(s) 273, 280
BcoDI GTCTC 1 cut(s) 227
BfaI CTAG 6 cut(s) 32, 90, 114, 173, 423, 491
BfoI RGCGCY 1 cut(s) 194
BisI GCNGC 3 cut(s) 284, 460, 495
BlsI GCNGC 3 cut(s) 285, 461, 496
Bme1390I CCNGG 2 cut(s) 273, 280
BmgBI CACGTC 1 cut(s) 527
BmiI GGNNCC 3 cut(s) 72, 141, 277
BmrFI CCNGG 2 cut(s) 273, 280
BmsI GCATC 2 cut(s) 140, 514
BmtI GCTAGC 1 cut(s) 494
BplI GAGNNNNNCTC 2 cut(s) 285, 317
BpmI CTGGAG 1 cut(s) 140
Bpu10I CCTNAGC 1 cut(s) 314
BpuMI CCSGG 2 cut(s) 273, 280
BsaI GGTCTC 1 cut(s) 227
BsaJI CCNNGG 1 cut(s) 217
BsaWI WCCGGW 3 cut(s) 73, 136, 443
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 279
Bse118I RCCGGY 3 cut(s) 73, 136, 187
BseDI CCNNGG 1 cut(s) 217
BseGI GGATG 1 cut(s) 466
BseLI CCNNNNNNNGG 2 cut(s) 278, 279
BseMII CTCAG 1 cut(s) 328
BseRI GAGGAG 1 cut(s) 30
BseXI GCAGC 3 cut(s) 270, 471, 506
BseYI CCCAGC 1 cut(s) 344
Bsh1236I CGCG 1 cut(s) 434
Bsh1285I CGRYCG 1 cut(s) 401
BshFI GGCC 2 cut(s) 98, 300
BshNI GGYRCC 1 cut(s) 70
BshTI ACCGGT 2 cut(s) 73, 136
BsiEI CGRYCG 1 cut(s) 401
BsiHKAI GWGCWC 1 cut(s) 240
BsiSI CCGG 7 cut(s) 74, 137, 188, 252, 273, 279, 444
BslI CCNNNNNNNGG 2 cut(s) 278, 279
BsmAI GTCTC 1 cut(s) 227
BsnI GGCC 2 cut(s) 98, 300
Bso31I GGTCTC 1 cut(s) 227
Bsp1286I GDGCHC 1 cut(s) 240
Bsp143I GATC 5 cut(s) 259, 275, 393, 425, 446
BspACI CCGC 4 cut(s) 185, 401, 432, 488
BspANI GGCC 2 cut(s) 98, 300
BspCNI CTCAG 1 cut(s) 327
BspFNI CGCG 1 cut(s) 434
BspLI GGNNCC 3 cut(s) 72, 141, 277
BspOI GCTAGC 1 cut(s) 494
BspPI GGATC 5 cut(s) 254, 270, 283, 388, 454
BspT107I GGYRCC 1 cut(s) 70
BspTNI GGTCTC 1 cut(s) 227
BsrFI RCCGGY 3 cut(s) 73, 136, 187
BssAI RCCGGY 3 cut(s) 73, 136, 187
BssECI CCNNGG 1 cut(s) 217
BssMI GATC 5 cut(s) 259, 275, 393, 425, 446
BssSI CACGAG 1 cut(s) 291
BssT1I CCWWGG 1 cut(s) 217
Bst2BI CACGAG 1 cut(s) 291
BstC8I GCNNGC 4 cut(s) 189, 240, 298, 492
BstDEI CTNAG 1 cut(s) 314
BstF5I GGATG 1 cut(s) 466
BstFNI CGCG 1 cut(s) 434
BstH2I RGCGCY 1 cut(s) 194
BstHHI GCGC 1 cut(s) 193
BstKTI GATC 5 cut(s) 262, 278, 396, 428, 449
BstMAI GTCTC 1 cut(s) 227
BstMBI GATC 5 cut(s) 259, 275, 393, 425, 446
BstMCI CGRYCG 1 cut(s) 401
BstMWI GCNNNNNNNGC 1 cut(s) 248
BstSCI CCNGG 2 cut(s) 271, 278
BstUI CGCG 1 cut(s) 434
BstV1I GCAGC 3 cut(s) 270, 471, 506
BstX2I RGATCY 3 cut(s) 259, 275, 393
BstXI CCANNNNNNTGG 1 cut(s) 127
BstYI RGATCY 3 cut(s) 259, 275, 393
BsuRI GGCC 2 cut(s) 98, 300
BtrI CACGTC 1 cut(s) 527
BtsCI GGATG 1 cut(s) 466
Cac8I GCNNGC 4 cut(s) 189, 240, 298, 492
CfoI GCGC 1 cut(s) 193
Cfr10I RCCGGY 3 cut(s) 73, 136, 187
Csp6I GTAC 2 cut(s) 71, 266
CspAI ACCGGT 2 cut(s) 73, 136
CviAII CATG 1 cut(s) 211
CviQI GTAC 2 cut(s) 71, 266
DdeI CTNAG 1 cut(s) 314
DpnI GATC 5 cut(s) 261, 277, 395, 427, 448
DpnII GATC 5 cut(s) 259, 275, 393, 425, 446
Eco130I CCWWGG 1 cut(s) 217
Eco147I AGGCCT 2 cut(s) 98, 300
Eco31I GGTCTC 1 cut(s) 227
Eco57I CTGAAG 2 cut(s) 65, 78
EcoT14I CCWWGG 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 217
FaeI CATG 1 cut(s) 214
FaiI YATR 3 cut(s) 212, 359, 477
FatI CATG 1 cut(s) 210
FauI CCCGC 1 cut(s) 439
FblI GTMKAC 1 cut(s) 309
Fnu4HI GCNGC 3 cut(s) 284, 460, 495
FokI GGATG 1 cut(s) 453
Fsp4HI GCNGC 3 cut(s) 284, 460, 495
FspBI CTAG 6 cut(s) 32, 90, 114, 173, 423, 491
GlaI GCGC 1 cut(s) 192
GluI GCNGC 3 cut(s) 284, 460, 495
GsaI CCCAGC 1 cut(s) 348
GsuI CTGGAG 1 cut(s) 140
HaeII RGCGCY 1 cut(s) 194
HaeIII GGCC 2 cut(s) 98, 300
HapII CCGG 7 cut(s) 74, 137, 188, 252, 273, 279, 444
HhaI GCGC 1 cut(s) 193
Hin1II CATG 1 cut(s) 214
Hin6I GCGC 1 cut(s) 191
HinP1I GCGC 1 cut(s) 191
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HpaII CCGG 7 cut(s) 74, 137, 188, 252, 273, 279, 444
HphI GGTGA 3 cut(s) 20, 126, 420
Hpy166II GTNNAC 2 cut(s) 182, 310
Hpy188I TCNGA 2 cut(s) 45, 398
Hpy188III TCNNGA 3 cut(s) 56, 157, 291
Hpy8I GTNNAC 2 cut(s) 182, 310
Hpy99I CGWCG 2 cut(s) 148, 207
HpyAV CCTTC 2 cut(s) 40, 329
HpyCH4IV ACGT 1 cut(s) 526
HpyCH4V TGCA 3 cut(s) 8, 111, 214
HpyF10VI GCNNNNNNNGC 1 cut(s) 248
HpyF3I CTNAG 1 cut(s) 314
HpySE526I ACGT 1 cut(s) 526
Hsp92II CATG 1 cut(s) 214
HspAI GCGC 1 cut(s) 191
KpnI GGTACC 1 cut(s) 74
KroI GCCGGC 1 cut(s) 187
KroNI GCCGGC 1 cut(s) 189
Kzo9I GATC 5 cut(s) 259, 275, 393, 425, 446
LmnI GCTCC 1 cut(s) 198
Lsp1109I GCAGC 3 cut(s) 270, 471, 506
LweI GCATC 2 cut(s) 140, 514
MaeI CTAG 6 cut(s) 32, 90, 114, 173, 423, 491
MaeII ACGT 1 cut(s) 526
MaeIII GTNAC 1 cut(s) 527
MalI GATC 5 cut(s) 261, 277, 395, 427, 448
MboI GATC 5 cut(s) 259, 275, 393, 425, 446
MflI RGATCY 3 cut(s) 259, 275, 393
MhlI GDGCHC 1 cut(s) 240
MluCI AATT 1 cut(s) 384
MmeI TCCRAC 2 cut(s) 421, 505
MnlI CCTC 8 cut(s) 48, 51, 88, 164, 218, 311, 323, 415
MreI CGCCGGCG 1 cut(s) 187
MroNI GCCGGC 1 cut(s) 187
MslI CAYNNNNRTG 1 cut(s) 125
MspI CCGG 7 cut(s) 74, 137, 188, 252, 273, 279, 444
MspR9I CCNGG 2 cut(s) 273, 280
MvnI CGCG 1 cut(s) 434
MwoI GCNNNNNNNGC 1 cut(s) 248
NaeI GCCGGC 1 cut(s) 189
NciI CCSGG 2 cut(s) 273, 280
NdeII GATC 5 cut(s) 259, 275, 393, 425, 446
NgoMIV GCCGGC 1 cut(s) 187
NheI GCTAGC 1 cut(s) 490
NlaIII CATG 1 cut(s) 214
NlaIV GGNNCC 3 cut(s) 72, 141, 277
NmuCI GTSAC 1 cut(s) 527
OliI CACNNNNGTG 1 cut(s) 125
PceI AGGCCT 2 cut(s) 98, 300
PdiI GCCGGC 1 cut(s) 189
PinAI ACCGGT 2 cut(s) 73, 136
PkrI GCNGC 3 cut(s) 285, 461, 496
PspFI CCCAGC 1 cut(s) 344
PspN4I GGNNCC 3 cut(s) 72, 141, 277
PsuI RGATCY 3 cut(s) 259, 275, 393
RsaI GTAC 2 cut(s) 72, 267
RsaNI GTAC 2 cut(s) 71, 266
RseI CAYNNNNRTG 1 cut(s) 125
SalI GTCGAC 1 cut(s) 308
SatI GCNGC 3 cut(s) 284, 460, 495
Sau3AI GATC 5 cut(s) 259, 275, 393, 425, 446
ScrFI CCNGG 2 cut(s) 273, 280
SduI GDGCHC 1 cut(s) 240
SetI ASST 7 cut(s) 33, 51, 109, 156, 223, 315, 529
SfaNI GCATC 2 cut(s) 140, 514
SgrAI CRCCGGYG 1 cut(s) 187
SmiMI CAYNNNNRTG 1 cut(s) 125
Sse9I AATT 1 cut(s) 384
SseBI AGGCCT 2 cut(s) 98, 300
SsiI CCGC 4 cut(s) 185, 401, 432, 488
SspMI CTAG 6 cut(s) 32, 90, 114, 173, 423, 491
StuI AGGCCT 2 cut(s) 98, 300
StyD4I CCNGG 2 cut(s) 271, 278
StyI CCWWGG 1 cut(s) 217
TaiI ACGT 1 cut(s) 529
TaqI TCGA 4 cut(s) 303, 309, 419, 508
TasI AATT 1 cut(s) 384
TseFI GTSAC 1 cut(s) 527
TseI GCWGC 3 cut(s) 283, 459, 494
Tsp45I GTSAC 1 cut(s) 527
TspDTI ATGAA 1 cut(s) 344
TspGWI ACGGA 1 cut(s) 132
XmiI GTMKAC 1 cut(s) 309
XspI CTAG 6 cut(s) 32, 90, 114, 173, 423, 491
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.