Rh7CG386600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0000441
Physical Location & Seq
Forward (+)
48896024 .. 48909637
13614 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG386600.1

Sequence Viewer

Length: 693 bp
ATGGCAAAAGATTTCAACTTTCTGATCGGAAACCCTAACTCCGATGAGTATTGCGAGTTTTCTCGACGATTCCCTGAAGTGAAAAGGTTGTCCAAGGTGATCCTGGAGCAACAAACCAAAGATGTAGCTAAACTGAGGGGGCTTGAGAATGAAAGTGATTTTGTTAGGTTGGAAATTGAGCAACAACAATCCCTAAGTGCACTTAAAACACCTAGCATTGAGAAGAGTGTGCTAGCAACTACCTGTACTAAAGAAGTGGGCTCTAAAGAGAAGTATGTGGATGATATTGACCCTAGTAAGATGTTTAAGTTGTTACCAACTCAATTTTACATAGATGATGGTCAGCTAGGGCCTTCAAGCACAAAGGTGCATAGTAGAGATATGGAGAAAAGGCTTCAAGAGTTGGCTGATTTGCTTGAAATTGAACAAGCTCATAATAAGCACCTTCGTAGTGAAAATGAGAGACTGCAATCAGAGATTAATATGCTCTGTCCGAGTAACAAAGTGGTTAAGAATGAGAATCAGATTTCAAGGAACTTGAGATCGAGGTCTAAATGTAAAAAACCCCTTCTTTTAGCCGATTCATCACTGAGAAGGCCAAGAAAGGAAAAGCAAAAGTTGAAATTGTTAACAAGGATGATGATGATTTTGTCTTACAATCGCCCTCGAAGAAAAAGAAGATACCAACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

230

Amino Acids

26.99

Weight (kDa)

9.67

Isoelectric Point (pI)

71.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 94
AcuI CTGAAG 1 cut(s) 96
AfaI GTAC 1 cut(s) 247
AgsI TTSAA 7 cut(s) 16, 357, 398, 419, 425, 531, 622
AjnI CCWGG 1 cut(s) 102
AleI CACNNNNGTG 1 cut(s) 365
AluBI AGCT 3 cut(s) 128, 346, 431
AluI AGCT 3 cut(s) 128, 346, 431
Alw21I GWGCWC 1 cut(s) 202
Alw26I GTCTC 1 cut(s) 457
Alw44I GTGCAC 1 cut(s) 198
AlwI GGATC 1 cut(s) 94
AoxI GGCC 2 cut(s) 350, 596
ApaLI GTGCAC 1 cut(s) 198
AseI ATTAAT 1 cut(s) 480
AspS9I GGNCC 1 cut(s) 350
AsuHPI GGTGA 1 cut(s) 109
AsuNHI GCTAGC 1 cut(s) 232
BaeGI GKGCMC 1 cut(s) 202
BanII GRGCYC 1 cut(s) 263
Bbv12I GWGCWC 1 cut(s) 202
BccI CCATC 1 cut(s) 332
BciT130I CCWGG 1 cut(s) 104
BcoDI GTCTC 1 cut(s) 457
BfaI CTAG 4 cut(s) 213, 233, 294, 347
Bme1390I CCNGG 1 cut(s) 104
BmgT120I GGNCC 1 cut(s) 350
BmrFI CCNGG 1 cut(s) 104
BmtI GCTAGC 1 cut(s) 236
BpmI CTGGAG 1 cut(s) 125
BpuEI CTTGAG 2 cut(s) 164, 559
BsaJI CCNNGG 1 cut(s) 93
BsaXI ACNNNNNCTCC 2 cut(s) 23, 53
BseBI CCWGG 1 cut(s) 104
BseDI CCNNGG 1 cut(s) 93
BseGI GGATG 2 cut(s) 286, 642
BseMII CTCAG 2 cut(s) 125, 581
BseSI GKGCMC 1 cut(s) 202
BshFI GGCC 2 cut(s) 352, 598
BsiHKAI GWGCWC 1 cut(s) 202
BsmAI GTCTC 1 cut(s) 457
BsnI GGCC 2 cut(s) 352, 598
Bsp1286I GDGCHC 2 cut(s) 202, 263
Bsp143I GATC 3 cut(s) 24, 99, 542
BspANI GGCC 2 cut(s) 352, 598
BspCNI CTCAG 2 cut(s) 126, 582
BspOI GCTAGC 1 cut(s) 236
BspPI GGATC 1 cut(s) 94
BssECI CCNNGG 1 cut(s) 93
BssMI GATC 3 cut(s) 24, 99, 542
BssT1I CCWWGG 1 cut(s) 93
Bst2UI CCWGG 1 cut(s) 104
Bst4CI ACNGT 1 cut(s) 690
Bst6I CTCTTC 1 cut(s) 218
BstC8I GCNNGC 1 cut(s) 234
BstDEI CTNAG 3 cut(s) 134, 194, 590
BstF5I GGATG 2 cut(s) 286, 642
BstKTI GATC 3 cut(s) 27, 102, 545
BstMAI GTCTC 1 cut(s) 457
BstMBI GATC 3 cut(s) 24, 99, 542
BstNI CCWGG 1 cut(s) 104
BstSCI CCNGG 1 cut(s) 102
BstSLI GKGCMC 1 cut(s) 202
BsuRI GGCC 2 cut(s) 352, 598
BtsCI GGATG 2 cut(s) 286, 642
BtsIMutI CAGTG 1 cut(s) 587
Cac8I GCNNGC 1 cut(s) 234
Cfr13I GGNCC 1 cut(s) 350
Csp6I GTAC 1 cut(s) 246
CviQI GTAC 1 cut(s) 246
DdeI CTNAG 3 cut(s) 134, 194, 590
DpnI GATC 3 cut(s) 26, 101, 544
DpnII GATC 3 cut(s) 24, 99, 542
Eam1104I CTCTTC 1 cut(s) 218
EarI CTCTTC 1 cut(s) 218
Eco130I CCWWGG 1 cut(s) 93
Eco24I GRGCYC 1 cut(s) 263
Eco57I CTGAAG 1 cut(s) 96
EcoO109I RGGNCCY 1 cut(s) 350
EcoRII CCWGG 1 cut(s) 102
EcoT14I CCWWGG 1 cut(s) 93
EcoT38I GRGCYC 1 cut(s) 263
ErhI CCWWGG 1 cut(s) 93
FaiI YATR 6 cut(s) 276, 332, 372, 383, 435, 485
FokI GGATG 2 cut(s) 293, 649
FriOI GRGCYC 1 cut(s) 263
FspBI CTAG 4 cut(s) 213, 233, 294, 347
GsuI CTGGAG 1 cut(s) 125
HaeIII GGCC 2 cut(s) 352, 598
HincII GTYRAC 1 cut(s) 630
HindII GTYRAC 1 cut(s) 630
HinfI GANTC 3 cut(s) 69, 520, 581
HpaI GTTAAC 1 cut(s) 630
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 2 cut(s) 200, 630
Hpy188I TCNGA 6 cut(s) 24, 29, 43, 475, 495, 525
Hpy188III TCNNGA 2 cut(s) 63, 398
Hpy8I GTNNAC 2 cut(s) 200, 630
Hpy99I CGWCG 1 cut(s) 69
HpyAV CCTTC 4 cut(s) 363, 455, 578, 588
HpyCH4III ACNGT 1 cut(s) 690
HpyCH4V TGCA 3 cut(s) 200, 370, 469
HpyF3I CTNAG 3 cut(s) 134, 194, 590
KspAI GTTAAC 1 cut(s) 630
Kzo9I GATC 3 cut(s) 24, 99, 542
LmnI GCTCC 1 cut(s) 106
LpnPI CCDG 4 cut(s) 87, 89, 116, 256
MaeI CTAG 4 cut(s) 213, 233, 294, 347
MaeIII GTNAC 2 cut(s) 312, 497
MalI GATC 3 cut(s) 26, 101, 544
MboI GATC 3 cut(s) 24, 99, 542
MboII GAAGA 3 cut(s) 235, 681, 690
MhlI GDGCHC 2 cut(s) 202, 263
MluCI AATT 4 cut(s) 174, 323, 420, 623
MmeI TCCRAC 1 cut(s) 150
MnlI CCTC 3 cut(s) 129, 540, 675
MseI TTAA 5 cut(s) 204, 306, 480, 510, 629
MslI CAYNNNNRTG 1 cut(s) 365
MspR9I CCNGG 1 cut(s) 104
MvaI CCWGG 1 cut(s) 104
NdeII GATC 3 cut(s) 24, 99, 542
NheI GCTAGC 1 cut(s) 232
OliI CACNNNNGTG 1 cut(s) 365
PfeI GAWTC 3 cut(s) 69, 520, 581
PfoI TCCNGGA 1 cut(s) 102
PshBI ATTAAT 1 cut(s) 480
Psp6I CCWGG 1 cut(s) 102
PspGI CCWGG 1 cut(s) 102
PspPI GGNCC 1 cut(s) 350
RsaI GTAC 1 cut(s) 247
RsaNI GTAC 1 cut(s) 246
RseI CAYNNNNRTG 1 cut(s) 365
SaqAI TTAA 5 cut(s) 204, 306, 480, 510, 629
Sau3AI GATC 3 cut(s) 24, 99, 542
Sau96I GGNCC 1 cut(s) 350
ScrFI CCNGG 1 cut(s) 104
SduI GDGCHC 2 cut(s) 202, 263
SmiMI CAYNNNNRTG 1 cut(s) 365
SmlI CTYRAG 2 cut(s) 143, 538
SmoI CTYRAG 2 cut(s) 143, 538
Sse9I AATT 4 cut(s) 174, 323, 420, 623
SspMI CTAG 4 cut(s) 213, 233, 294, 347
StyD4I CCNGG 1 cut(s) 102
StyI CCWWGG 1 cut(s) 93
TaaI ACNGT 1 cut(s) 690
TaqI TCGA 3 cut(s) 64, 545, 667
TasI AATT 4 cut(s) 174, 323, 420, 623
TatI WGTACW 1 cut(s) 245
TfiI GAWTC 3 cut(s) 69, 520, 581
Tru1I TTAA 5 cut(s) 204, 306, 480, 510, 629
Tru9I TTAA 5 cut(s) 204, 306, 480, 510, 629
TscAI CASTG 1 cut(s) 594
TspDTI ATGAA 2 cut(s) 165, 573
TspRI CASTG 1 cut(s) 594
VneI GTGCAC 1 cut(s) 198
VspI ATTAAT 1 cut(s) 480
XcmI CCANNNNNNNNNTGG 1 cut(s) 100
XspI CTAG 4 cut(s) 213, 233, 294, 347
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.