Rorug05G0253300

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000441
Physical Location & Seq
Forward (+)
27897194 .. 27897607
414 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0253300.1

Sequence Viewer

Length: 414 bp
ATGTGGAGTGGCACAACAAATATCAATCGCGTTGTTTACTCAGCTCCAGCAGATCAGTGTGACGCTTATAATGTGTGCGGTGCATTTGCTCTCTGCAGTGTTGATTCTCCCCAATTATGTGCATGCTTACAAGGGTTTGCACCAAATTCTTCAACGTCCAACAGGTGTCTTCGTAGAACTCCATTGAGTTGCAATGATTACCAAGATGGCTTCAAGAAGTTCACAAGGGTGAAACTGCCGGACACATCTTCGTCCTGGTTTGACTTGAAACTGACCCTTGAGGACTGTGAGAAAATTTGTTTGAAGAAGTGCAATTGCACTGCTTATGCAAATTTGGATGTAAGGGAAGGAGGAAGTGGCTGTTTGCACTGGTTTGATGAACTCGATGACTGTCACGCCCCGAATTTTGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

137

Amino Acids

15.25

Weight (kDa)

5.09

Isoelectric Point (pI)

50.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
S_locus_glycop PF00954 2 - 49 1.1e-12 S-locus glycoprotein domain
PAN_2 PF08276 64 - 130 3.2e-20 PAN-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 69
AccII CGCG 1 cut(s) 30
AciI CCGC 1 cut(s) 78
AcsI RAATTY 4 cut(s) 145, 294, 331, 403
AgsI TTSAA 5 cut(s) 153, 214, 268, 304, 410
AjnI CCWGG 1 cut(s) 254
AleI CACNNNNGTG 1 cut(s) 227
AluBI AGCT 1 cut(s) 44
AluI AGCT 1 cut(s) 44
ApoI RAATTY 4 cut(s) 145, 294, 331, 403
AsuHPI GGTGA 1 cut(s) 241
BbsI GAAGAC 1 cut(s) 161
BccI CCATC 1 cut(s) 200
BciT130I CCWGG 1 cut(s) 256
BfmI CTRYAG 1 cut(s) 94
Bme1390I CCNGG 1 cut(s) 256
BmrFI CCNGG 1 cut(s) 256
BpiI GAAGAC 1 cut(s) 161
BpmI CTGGAG 1 cut(s) 30
BpuEI CTTGAG 1 cut(s) 299
Bse1I ACTGG 1 cut(s) 374
Bse3DI GCAATG 1 cut(s) 199
BseBI CCWGG 1 cut(s) 256
BseGI GGATG 1 cut(s) 343
BseMI GCAATG 1 cut(s) 199
BseMII CTCAG 1 cut(s) 54
BseNI ACTGG 1 cut(s) 374
Bsh1236I CGCG 1 cut(s) 30
BsiSI CCGG 1 cut(s) 239
Bsp143I GATC 1 cut(s) 52
BspACI CCGC 1 cut(s) 78
BspCNI CTCAG 1 cut(s) 53
BspFNI CGCG 1 cut(s) 30
BspMAI CTGCAG 1 cut(s) 98
BsrDI GCAATG 1 cut(s) 199
BsrI ACTGG 1 cut(s) 374
BssMI GATC 1 cut(s) 52
Bst2UI CCWGG 1 cut(s) 256
Bst4CI ACNGT 2 cut(s) 287, 392
BstC8I GCNNGC 1 cut(s) 124
BstDEI CTNAG 1 cut(s) 40
BstF5I GGATG 1 cut(s) 343
BstFNI CGCG 1 cut(s) 30
BstKTI GATC 1 cut(s) 55
BstMBI GATC 1 cut(s) 52
BstNI CCWGG 1 cut(s) 256
BstNSI RCATGY 1 cut(s) 126
BstSCI CCNGG 1 cut(s) 254
BstSFI CTRYAG 1 cut(s) 94
BstUI CGCG 1 cut(s) 30
BstV2I GAAGAC 1 cut(s) 161
BtsCI GGATG 1 cut(s) 343
BtsI GCAGTG 2 cut(s) 103, 318
BtsIMutI CAGTG 4 cut(s) 62, 103, 318, 367
Cac8I GCNNGC 1 cut(s) 124
CseI GACGC 1 cut(s) 71
CviAII CATG 1 cut(s) 123
CviJI RGCY 3 cut(s) 44, 210, 360
CviKI_1 RGCY 3 cut(s) 44, 210, 360
DdeI CTNAG 1 cut(s) 40
DpnI GATC 1 cut(s) 54
DpnII GATC 1 cut(s) 52
EcoRII CCWGG 1 cut(s) 254
FaeI CATG 1 cut(s) 126
FaiI YATR 4 cut(s) 69, 118, 124, 327
FatI CATG 1 cut(s) 122
FokI GGATG 1 cut(s) 350
GsuI CTGGAG 1 cut(s) 30
HapII CCGG 1 cut(s) 239
HgaI GACGC 1 cut(s) 71
Hin1II CATG 1 cut(s) 126
HinfI GANTC 1 cut(s) 104
HpaII CCGG 1 cut(s) 239
HphI GGTGA 1 cut(s) 241
Hpy166II GTNNAC 2 cut(s) 37, 222
Hpy188III TCNNGA 1 cut(s) 214
Hpy8I GTNNAC 2 cut(s) 37, 222
HpyAV CCTTC 1 cut(s) 341
HpyCH4III ACNGT 2 cut(s) 287, 392
HpyCH4IV ACGT 1 cut(s) 155
HpyCH4V TGCA 9 cut(s) 83, 96, 122, 140, 192, 312, 318, 329, 367
HpyF3I CTNAG 1 cut(s) 40
HpySE526I ACGT 1 cut(s) 155
Hsp92II CATG 1 cut(s) 126
Kzo9I GATC 1 cut(s) 52
LmnI GCTCC 1 cut(s) 49
LpnPI CCDG 6 cut(s) 60, 148, 241, 252, 268, 355
MaeII ACGT 1 cut(s) 155
MaeIII GTNAC 2 cut(s) 59, 392
MalI GATC 1 cut(s) 54
MboI GATC 1 cut(s) 52
MboII GAAGA 4 cut(s) 141, 161, 240, 316
MfeI CAATTG 1 cut(s) 313
MluCI AATT 6 cut(s) 113, 145, 294, 313, 331, 403
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 2 cut(s) 274, 344
MslI CAYNNNNRTG 1 cut(s) 227
MspI CCGG 1 cut(s) 239
MspR9I CCNGG 1 cut(s) 256
MunI CAATTG 1 cut(s) 313
MvaI CCWGG 1 cut(s) 256
MvnI CGCG 1 cut(s) 30
NdeII GATC 1 cut(s) 52
NlaIII CATG 1 cut(s) 126
NmuCI GTSAC 2 cut(s) 59, 392
NspI RCATGY 1 cut(s) 126
OliI CACNNNNGTG 1 cut(s) 227
PaeI GCATGC 1 cut(s) 126
PfeI GAWTC 1 cut(s) 104
PsiI TTATAA 1 cut(s) 69
Psp6I CCWGG 1 cut(s) 254
PspGI CCWGG 1 cut(s) 254
PstI CTGCAG 1 cut(s) 98
RseI CAYNNNNRTG 1 cut(s) 227
Sau3AI GATC 1 cut(s) 52
ScrFI CCNGG 1 cut(s) 256
SetI ASST 3 cut(s) 46, 158, 167
SfcI CTRYAG 1 cut(s) 94
SmiMI CAYNNNNRTG 1 cut(s) 227
SmlI CTYRAG 1 cut(s) 278
SmoI CTYRAG 1 cut(s) 278
SphI GCATGC 1 cut(s) 126
Sse9I AATT 6 cut(s) 113, 145, 294, 313, 331, 403
SsiI CCGC 1 cut(s) 78
StyD4I CCNGG 1 cut(s) 254
TaaI ACNGT 2 cut(s) 287, 392
TaiI ACGT 1 cut(s) 158
TaqI TCGA 1 cut(s) 384
TasI AATT 6 cut(s) 113, 145, 294, 313, 331, 403
TfiI GAWTC 1 cut(s) 104
TscAI CASTG 4 cut(s) 62, 103, 325, 374
TseFI GTSAC 2 cut(s) 59, 392
Tsp45I GTSAC 2 cut(s) 59, 392
TspDTI ATGAA 1 cut(s) 393
TspRI CASTG 4 cut(s) 62, 103, 325, 374
XapI RAATTY 4 cut(s) 145, 294, 331, 403
XceI RCATGY 1 cut(s) 126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.