Rmu_sc0001084.1_g000012

Domain of unknown function (DUF4283)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001084.1
OG0000441
Physical Location & Seq
Forward (+)
58202 .. 58780
579 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001084.1_g000012.1.cds

Sequence Viewer

Length: 579 bp
atggtagaaagggagaatcactgcttcccggttcaaattgactatgagaatcttcctccgcaatgtggccattgtgatttgataggtcatgaacagaagaattgcaggcatttaaacgtgaaacggttttcggctaataaagcccttgagaagcataaggtggttcgtcaggagtatcgggttaagcctacgactataattcctacagtttcttcaccaccccaggttaatgaaggcactccctcttcagtgtctaaaagtgataggggttctgcatctccatcttcatctcctgtgataaatgcggataagactcaagagatgaatgttttggagcactctgccccaactcatgatgatgcccatattgcagtagagacttttgttgaaaatattttggaggaagccgctggaaatatcatggaaacaattgcgcaaagagatatagaggaggatgaacctgtcttagaatctaatgagcatgacgtctctgaggcttccgataatgattctcatgttagtgatacgccatcccggacttggggtgagatttttgatgaagaacgggatggagtctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4283 zf-CCHC_4

Protein Analysis

192

Amino Acids

21.41

Weight (kDa)

4.72

Isoelectric Point (pI)

57.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 489
Acc16I TGCGCA 1 cut(s) 435
AciI CCGC 3 cut(s) 59, 305, 408
AcoI YGGCCR 1 cut(s) 67
AcuI CTGAAG 1 cut(s) 231
AcyI GRCGYC 1 cut(s) 486
AfiI CCNNNNNNNGG 3 cut(s) 65, 540, 541
AgsI TTSAA 2 cut(s) 35, 389
AjnI CCWGG 1 cut(s) 222
Alw21I GWGCWC 1 cut(s) 339
Alw26I GTCTC 2 cut(s) 371, 493
AoxI GGCC 1 cut(s) 67
AspLEI GCGC 1 cut(s) 436
AsuC2I CCSGG 2 cut(s) 29, 535
AsuHPI GGTGA 2 cut(s) 207, 557
BalI TGGCCA 1 cut(s) 69
Bbv12I GWGCWC 1 cut(s) 339
BccI CCATC 3 cut(s) 289, 538, 563
BciT130I CCWGG 1 cut(s) 224
BcnI CCSGG 2 cut(s) 29, 535
BcoDI GTCTC 2 cut(s) 371, 493
BfaI CTAG 1 cut(s) 577
BfmI CTRYAG 1 cut(s) 204
BisI GCNGC 1 cut(s) 408
BlsI GCNGC 1 cut(s) 409
Bme1390I CCNGG 3 cut(s) 29, 224, 535
BmrFI CCNGG 3 cut(s) 29, 224, 535
BmsI GCATC 2 cut(s) 284, 349
BpuEI CTTGAG 2 cut(s) 167, 300
BpuMI CCSGG 2 cut(s) 29, 535
BsaHI GRCGYC 1 cut(s) 486
BsaJI CCNNGG 1 cut(s) 222
Bsc4I CCNNNNNNNGG 3 cut(s) 65, 540, 541
Bse3DI GCAATG 1 cut(s) 68
BseBI CCWGG 1 cut(s) 224
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 3 cut(s) 460, 530, 574
BseLI CCNNNNNNNGG 3 cut(s) 65, 540, 541
BseMI GCAATG 1 cut(s) 68
BseMII CTCAG 1 cut(s) 483
BseRI GAGGAG 1 cut(s) 464
BshFI GGCC 1 cut(s) 69
BsiHKAI GWGCWC 1 cut(s) 339
BsiSI CCGG 2 cut(s) 29, 535
BslI CCNNNNNNNGG 3 cut(s) 65, 540, 541
BsmAI GTCTC 2 cut(s) 371, 493
BsmBI CGTCTC 1 cut(s) 493
BsnI GGCC 1 cut(s) 69
Bsp1286I GDGCHC 1 cut(s) 339
BspACI CCGC 3 cut(s) 59, 305, 408
BspANI GGCC 1 cut(s) 69
BspCNI CTCAG 1 cut(s) 484
BspHI TCATGA 2 cut(s) 88, 352
BsrDI GCAATG 1 cut(s) 68
BssECI CCNNGG 1 cut(s) 222
BssNI GRCGYC 1 cut(s) 486
Bst2UI CCWGG 1 cut(s) 224
Bst4CI ACNGT 2 cut(s) 126, 208
Bst6I CTCTTC 1 cut(s) 250
BstACI GRCGYC 1 cut(s) 486
BstC8I GCNNGC 1 cut(s) 107
BstDEI CTNAG 2 cut(s) 466, 492
BstF5I GGATG 3 cut(s) 460, 530, 574
BstHHI GCGC 1 cut(s) 436
BstMAI GTCTC 2 cut(s) 371, 493
BstMWI GCNNNNNNNGC 2 cut(s) 140, 368
BstNI CCWGG 1 cut(s) 224
BstSCI CCNGG 3 cut(s) 27, 222, 533
BstSFI CTRYAG 1 cut(s) 204
BsuRI GGCC 1 cut(s) 69
BtsCI GGATG 3 cut(s) 460, 530, 574
BtsI GCAGTG 1 cut(s) 19
BtsIMutI CAGTG 2 cut(s) 19, 255
Cac8I GCNNGC 1 cut(s) 107
CciI TCATGA 2 cut(s) 88, 352
CfoI GCGC 1 cut(s) 436
CviAII CATG 5 cut(s) 89, 353, 421, 482, 515
CviJI RGCY 6 cut(s) 69, 134, 143, 187, 407, 497
CviKI_1 RGCY 6 cut(s) 69, 134, 143, 187, 407, 497
DdeI CTNAG 2 cut(s) 466, 492
DraI TTTAAA 1 cut(s) 114
EaeI YGGCCR 1 cut(s) 67
Eam1104I CTCTTC 1 cut(s) 250
EarI CTCTTC 1 cut(s) 250
Eco57I CTGAAG 1 cut(s) 231
EcoRII CCWGG 1 cut(s) 222
Esp3I CGTCTC 1 cut(s) 493
FaeI CATG 5 cut(s) 92, 356, 424, 485, 518
FatI CATG 5 cut(s) 88, 352, 420, 481, 514
Fnu4HI GCNGC 1 cut(s) 408
FokI GGATG 2 cut(s) 467, 517
Fsp4HI GCNGC 1 cut(s) 408
FspBI CTAG 1 cut(s) 577
FspI TGCGCA 1 cut(s) 435
GlaI GCGC 1 cut(s) 435
GluI GCNGC 1 cut(s) 408
HaeIII GGCC 1 cut(s) 69
HapII CCGG 2 cut(s) 29, 535
HhaI GCGC 1 cut(s) 436
Hin1I GRCGYC 1 cut(s) 486
Hin1II CATG 5 cut(s) 92, 356, 424, 485, 518
Hin6I GCGC 1 cut(s) 434
HinP1I GCGC 1 cut(s) 434
HinfI GANTC 6 cut(s) 16, 49, 313, 470, 509, 573
HpaII CCGG 2 cut(s) 29, 535
HphI GGTGA 2 cut(s) 207, 557
Hpy188I TCNGA 2 cut(s) 493, 502
Hpy188III TCNNGA 4 cut(s) 89, 170, 317, 353
HpyAV CCTTC 1 cut(s) 227
HpyCH4III ACNGT 2 cut(s) 126, 208
HpyCH4IV ACGT 2 cut(s) 117, 486
HpyCH4V TGCA 3 cut(s) 105, 275, 371
HpyF10VI GCNNNNNNNGC 2 cut(s) 140, 368
HpyF3I CTNAG 2 cut(s) 466, 492
HpySE526I ACGT 2 cut(s) 117, 486
Hsp92I GRCGYC 1 cut(s) 486
Hsp92II CATG 5 cut(s) 92, 356, 424, 485, 518
HspAI GCGC 1 cut(s) 434
LmnI GCTCC 1 cut(s) 334
LpnPI CCDG 9 cut(s) 42, 91, 155, 209, 236, 306, 396, 474, 548
LweI GCATC 2 cut(s) 284, 349
MaeI CTAG 1 cut(s) 577
MaeII ACGT 2 cut(s) 117, 486
MboII GAAGA 6 cut(s) 44, 109, 204, 237, 276, 572
MfeI CAATTG 1 cut(s) 429
MhlI GDGCHC 1 cut(s) 339
MlsI TGGCCA 1 cut(s) 69
MluCI AATT 4 cut(s) 36, 100, 198, 429
MluNI TGGCCA 1 cut(s) 69
MlyI GAGTC 1 cut(s) 307
MnlI CCTC 6 cut(s) 66, 253, 394, 442, 445, 487
Mox20I TGGCCA 1 cut(s) 69
MscI TGGCCA 1 cut(s) 69
MseI TTAA 3 cut(s) 113, 183, 228
MslI CAYNNNNRTG 2 cut(s) 357, 519
Msp20I TGGCCA 1 cut(s) 69
MspA1I CMGCKG 1 cut(s) 410
MspI CCGG 2 cut(s) 29, 535
MspR9I CCNGG 3 cut(s) 29, 224, 535
MunI CAATTG 1 cut(s) 429
MvaI CCWGG 1 cut(s) 224
MwoI GCNNNNNNNGC 2 cut(s) 140, 368
NciI CCSGG 2 cut(s) 29, 535
NlaIII CATG 5 cut(s) 92, 356, 424, 485, 518
NsbI TGCGCA 1 cut(s) 435
PagI TCATGA 2 cut(s) 88, 352
PfeI GAWTC 4 cut(s) 16, 49, 470, 509
PfoI TCCNGGA 1 cut(s) 533
PkrI GCNGC 1 cut(s) 409
PleI GAGTC 1 cut(s) 307
PpsI GAGTC 1 cut(s) 307
Psp6I CCWGG 1 cut(s) 222
PspGI CCWGG 1 cut(s) 222
RseI CAYNNNNRTG 2 cut(s) 357, 519
SaqAI TTAA 3 cut(s) 113, 183, 228
SatI GCNGC 1 cut(s) 408
SchI GAGTC 1 cut(s) 307
ScrFI CCNGG 3 cut(s) 29, 224, 535
SduI GDGCHC 1 cut(s) 339
SetI ASST 6 cut(s) 88, 120, 162, 228, 463, 489
SfaNI GCATC 2 cut(s) 284, 349
SfcI CTRYAG 1 cut(s) 204
SmiMI CAYNNNNRTG 2 cut(s) 357, 519
SmlI CTYRAG 2 cut(s) 146, 315
SmoI CTYRAG 2 cut(s) 146, 315
Sse9I AATT 4 cut(s) 36, 100, 198, 429
SsiI CCGC 3 cut(s) 59, 305, 408
SspI AATATT 1 cut(s) 394
SspMI CTAG 1 cut(s) 577
StyD4I CCNGG 3 cut(s) 27, 222, 533
TaaI ACNGT 2 cut(s) 126, 208
TaiI ACGT 2 cut(s) 120, 489
TasI AATT 4 cut(s) 36, 100, 198, 429
TauI GCSGC 1 cut(s) 410
TfiI GAWTC 4 cut(s) 16, 49, 470, 509
Tru1I TTAA 3 cut(s) 113, 183, 228
Tru9I TTAA 3 cut(s) 113, 183, 228
TscAI CASTG 2 cut(s) 26, 255
TspDTI ATGAA 6 cut(s) 105, 246, 276, 338, 471, 573
TspRI CASTG 2 cut(s) 26, 255
XcmI CCANNNNNNNNNTGG 1 cut(s) 537
XspI CTAG 1 cut(s) 577
ZraI GACGTC 1 cut(s) 487
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.