RLG00000004801

Plant mobile domain

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
Physical Location & Seq
Forward (+)
62481072 .. 62482678
1607 bp
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UTR
Exon/CDS
Intron
RLM00000004801

Sequence Viewer

Length: 993 bp
ATGGTTGCAGAACAAATCCGAGTTCCTCCCCTGGTGGTATTTCTTGAATTCATCTGGGTACCGCTATCAGAGGTGTTTGGGTATCTATTGAGTTTGAAATTGTGCATATTGGATGATGTGTTTGTATTTTGTTCTGCTTCTTGCCTGGTGCAAGGGTGCTTTATGGCAAAGAAGGAGTATCCCTATCTAGAGTACAGGTGTGATTTATTGAAGTTTGGGTGTGTAATTGCTCTGCCGTATTGGTTTTGTGAGCGGACTCTCTTCATTGAACCGATGAGAGGAAGGGAACAAATGGAACCGAAAATTGTGAAATGGAATTTGCTGGAACTTTATGCTAGGATGAAAGTGGTCTCTATTCTTGAGATAGAGGTAAAGGAGAGAGATGAGGATCAGAGTACTAATGTTGTGCCTAGTGGTGAGAAGCATTTAGTTGAAATTGAGACTACAAGCGGTACAAAATCAAGAGAACGAAAAAATGCGACTGATTTTGATCCCAACAAGATGTTCCAGCTGTTACCGACCCAATTCTACTTGGAAGAAAGCCAAGAGGGACCTTCAAGCAATGAGAATGATATACCTGAATTGGAGAAAAGGGTTCAAGAGTTTGCTGATTTGCTGGAGGTTGAGCGAGCCAAAAATGAGACTCTTAGTGCGGAAAATTTGAAATTGTGCATGGAGATAGGATTGCTCAGGAAAGCCATTCCTAAAGATGAGATTCCAAATGGGAATTCAAGGAAGTTGAGGACAAAAGAACTATGTAAAAAACCATCATTCCTTGAAGGTTATATCATTGGCGACATTAGAGCCAAAAGAGGTAAGGAAAAGATCATTGATGAAATAGGTGATGCTGTTGTGGAAGAACCAACTGTGAAGAAGGAGAAGAAACAAATTGTTGCGCAACAAATAGGTGTGAGAAGGTTCAGGGTTGGAAAGTGTATGTCCCAGGTAAATGCAGAAAAGCTCAAGGAATATTTATCCAAAGCTAGCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

331

Amino Acids

38.12

Weight (kDa)

6.2

Isoelectric Point (pI)

42.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 897
Acc36I ACCTGC 1 cut(s) 978
Acc65I GGTACC 1 cut(s) 58
AccB1I GGYRCC 1 cut(s) 58
AccBSI CCGCTC 1 cut(s) 253
AciI CCGC 4 cut(s) 62, 253, 450, 653
AclWI GGATC 2 cut(s) 396, 485
AcsI RAATTY 4 cut(s) 47, 316, 658, 727
AfaI GTAC 4 cut(s) 60, 194, 397, 454
AfiI CCNNNNNNNGG 1 cut(s) 278
AjnI CCWGG 3 cut(s) 30, 144, 942
AjuI GAANNNNNNNTTGG 4 cut(s) 488, 520, 712, 744
AluBI AGCT 3 cut(s) 511, 961, 983
AluI AGCT 3 cut(s) 511, 961, 983
Alw26I GTCTC 3 cut(s) 355, 434, 635
AlwI GGATC 2 cut(s) 396, 485
ApoI RAATTY 4 cut(s) 47, 316, 658, 727
Asp718I GGTACC 1 cut(s) 58
AspLEI GCGC 1 cut(s) 898
AspS9I GGNCC 1 cut(s) 551
AsuHPI GGTGA 2 cut(s) 428, 854
AsuNHI GCTAGC 1 cut(s) 983
AvaII GGWCC 1 cut(s) 551
BanI GGYRCC 1 cut(s) 58
BccI CCATC 1 cut(s) 775
BceAI ACGGC 1 cut(s) 220
BciT130I CCWGG 3 cut(s) 32, 146, 944
BciVI GTATCC 1 cut(s) 189
BcoDI GTCTC 3 cut(s) 355, 434, 635
BfaI CTAG 4 cut(s) 188, 336, 411, 984
BfuAI ACCTGC 1 cut(s) 978
BfuI GTATCC 1 cut(s) 189
BmcAI AGTACT 1 cut(s) 397
Bme1390I CCNGG 3 cut(s) 32, 146, 944
Bme18I GGWCC 1 cut(s) 551
BmgT120I GGNCC 1 cut(s) 551
BmiI GGNNCC 3 cut(s) 60, 297, 552
BmrFI CCNGG 3 cut(s) 32, 146, 944
BmsI GCATC 1 cut(s) 835
BmtI GCTAGC 1 cut(s) 987
BpmI CTGGAG 1 cut(s) 638
Bpu10I CCTNAGC 1 cut(s) 689
BpuEI CTTGAG 2 cut(s) 380, 947
BsaBI GATNNNNATC 2 cut(s) 387, 489
BsaI GGTCTC 1 cut(s) 355
BsaJI CCNNGG 2 cut(s) 30, 942
Bsc4I CCNNNNNNNGG 1 cut(s) 278
Bse3DI GCAATG 1 cut(s) 568
Bse8I GATNNNNATC 2 cut(s) 387, 489
BseBI CCWGG 3 cut(s) 32, 146, 944
BseDI CCNNGG 2 cut(s) 30, 942
BseGI GGATG 2 cut(s) 118, 345
BseJI GATNNNNATC 2 cut(s) 387, 489
BseLI CCNNNNNNNGG 1 cut(s) 278
BseMI GCAATG 1 cut(s) 568
BseMII CTCAG 1 cut(s) 703
BshNI GGYRCC 1 cut(s) 58
BslFI GGGAC 2 cut(s) 564, 925
BslI CCNNNNNNNGG 1 cut(s) 278
BsmAI GTCTC 3 cut(s) 355, 434, 635
BsmFI GGGAC 2 cut(s) 564, 925
Bso31I GGTCTC 1 cut(s) 355
Bsp143I GATC 3 cut(s) 388, 490, 825
BspACI CCGC 4 cut(s) 62, 253, 450, 653
BspCNI CTCAG 1 cut(s) 702
BspLI GGNNCC 3 cut(s) 60, 297, 552
BspMI ACCTGC 1 cut(s) 978
BspOI GCTAGC 1 cut(s) 987
BspPI GGATC 2 cut(s) 396, 485
BspT107I GGYRCC 1 cut(s) 58
BspTNI GGTCTC 1 cut(s) 355
BsrBI CCGCTC 1 cut(s) 253
BsrDI GCAATG 1 cut(s) 568
BssECI CCNNGG 2 cut(s) 30, 942
BssMI GATC 3 cut(s) 388, 490, 825
Bst2UI CCWGG 3 cut(s) 32, 146, 944
Bst4CI ACNGT 1 cut(s) 868
Bst6I CTCTTC 1 cut(s) 266
BstC8I GCNNGC 2 cut(s) 630, 985
BstDEI CTNAG 2 cut(s) 647, 689
BstF5I GGATG 2 cut(s) 118, 345
BstHHI GCGC 1 cut(s) 898
BstKTI GATC 3 cut(s) 391, 493, 828
BstMAI GTCTC 3 cut(s) 355, 434, 635
BstMBI GATC 3 cut(s) 388, 490, 825
BstNI CCWGG 3 cut(s) 32, 146, 944
BstSCI CCNGG 3 cut(s) 30, 144, 942
BsuI GTATCC 1 cut(s) 189
BtsCI GGATG 2 cut(s) 118, 345
BveI ACCTGC 1 cut(s) 978
Cac8I GCNNGC 2 cut(s) 630, 985
CfoI GCGC 1 cut(s) 898
Cfr13I GGNCC 1 cut(s) 551
Csp6I GTAC 4 cut(s) 59, 193, 396, 453
CviAII CATG 1 cut(s) 673
CviJI RGCY 7 cut(s) 511, 543, 632, 698, 806, 961, 983
CviKI_1 RGCY 7 cut(s) 511, 543, 632, 698, 806, 961, 983
CviQI GTAC 4 cut(s) 59, 193, 396, 453
DdeI CTNAG 2 cut(s) 647, 689
DpnI GATC 3 cut(s) 390, 492, 827
DpnII GATC 3 cut(s) 388, 490, 825
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
Eco31I GGTCTC 1 cut(s) 355
Eco47I GGWCC 1 cut(s) 551
EcoO109I RGGNCCY 1 cut(s) 551
EcoRI GAATTC 2 cut(s) 47, 727
EcoRII CCWGG 3 cut(s) 30, 144, 942
FaeI CATG 1 cut(s) 676
FaiI YATR 8 cut(s) 107, 164, 333, 575, 674, 757, 786, 938
FaqI GGGAC 2 cut(s) 564, 925
FatI CATG 1 cut(s) 672
FokI GGATG 2 cut(s) 125, 352
FspBI CTAG 4 cut(s) 188, 336, 411, 984
FspI TGCGCA 1 cut(s) 897
GlaI GCGC 1 cut(s) 897
GsuI CTGGAG 1 cut(s) 638
HhaI GCGC 1 cut(s) 898
Hin1II CATG 1 cut(s) 676
Hin6I GCGC 1 cut(s) 896
HinP1I GCGC 1 cut(s) 896
HinfI GANTC 3 cut(s) 256, 643, 715
HphI GGTGA 2 cut(s) 428, 854
Hpy188I TCNGA 3 cut(s) 20, 70, 393
Hpy188III TCNNGA 6 cut(s) 44, 188, 359, 462, 599, 691
HpyAV CCTTC 6 cut(s) 166, 276, 564, 773, 868, 909
HpyCH4III ACNGT 1 cut(s) 868
HpyCH4V TGCA 5 cut(s) 8, 105, 151, 672, 953
HpyF3I CTNAG 2 cut(s) 647, 689
Hsp92II CATG 1 cut(s) 676
HspAI GCGC 1 cut(s) 896
KpnI GGTACC 1 cut(s) 62
Kzo9I GATC 3 cut(s) 388, 490, 825
LweI GCATC 1 cut(s) 835
MaeI CTAG 4 cut(s) 188, 336, 411, 984
MaeIII GTNAC 1 cut(s) 513
MalI GATC 3 cut(s) 390, 492, 827
MbiI CCGCTC 1 cut(s) 253
MboI GATC 3 cut(s) 388, 490, 825
MboII GAAGA 5 cut(s) 253, 548, 869, 883, 892
MlyI GAGTC 2 cut(s) 250, 637
MmeI TCCRAC 1 cut(s) 907
MnlI CCTC 9 cut(s) 36, 64, 272, 361, 379, 541, 613, 735, 806
MspA1I CMGCKG 1 cut(s) 511
MspR9I CCNGG 3 cut(s) 32, 146, 944
MvaI CCWGG 3 cut(s) 32, 146, 944
NdeII GATC 3 cut(s) 388, 490, 825
NheI GCTAGC 1 cut(s) 983
NlaIII CATG 1 cut(s) 676
NlaIV GGNNCC 3 cut(s) 60, 297, 552
NsbI TGCGCA 1 cut(s) 897
PfeI GAWTC 1 cut(s) 715
PleI GAGTC 2 cut(s) 250, 637
PpsI GAGTC 2 cut(s) 250, 637
PpuMI RGGWCCY 1 cut(s) 551
Psp5II RGGWCCY 1 cut(s) 551
Psp6I CCWGG 3 cut(s) 30, 144, 942
PspGI CCWGG 3 cut(s) 30, 144, 942
PspN4I GGNNCC 3 cut(s) 60, 297, 552
PspPI GGNCC 1 cut(s) 551
PspPPI RGGWCCY 1 cut(s) 551
PvuII CAGCTG 1 cut(s) 511
RsaI GTAC 4 cut(s) 60, 194, 397, 454
RsaNI GTAC 4 cut(s) 59, 193, 396, 453
Sau3AI GATC 3 cut(s) 388, 490, 825
Sau96I GGNCC 1 cut(s) 551
ScaI AGTACT 1 cut(s) 397
SchI GAGTC 2 cut(s) 250, 637
ScrFI CCNGG 3 cut(s) 32, 146, 944
SfaNI GCATC 1 cut(s) 835
SinI GGWCC 1 cut(s) 551
SmlI CTYRAG 2 cut(s) 359, 962
SmoI CTYRAG 2 cut(s) 359, 962
SsiI CCGC 4 cut(s) 62, 253, 450, 653
SspI AATATT 1 cut(s) 971
SspMI CTAG 4 cut(s) 188, 336, 411, 984
StyD4I CCNGG 3 cut(s) 30, 144, 942
TaaI ACNGT 1 cut(s) 868
TatI WGTACW 2 cut(s) 192, 395
TfiI GAWTC 1 cut(s) 715
TspDTI ATGAA 4 cut(s) 40, 253, 356, 849
VpaK11BI GGWCC 1 cut(s) 551
XapI RAATTY 4 cut(s) 47, 316, 658, 727
XbaI TCTAGA 1 cut(s) 187
XspI CTAG 4 cut(s) 188, 336, 411, 984
ZrmI AGTACT 1 cut(s) 397
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.