Rh1BG004200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0000441
Physical Location & Seq
Forward (+)
623603 .. 623983
381 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG004200.1

Sequence Viewer

Length: 303 bp
ATGATATGGAAACATGTGAAAAGAGAAGGGCAACTGTGTCTATTTACGTTCAATGTATCAAACAAAGACAGGGACTTGCTTACCTGGTTGGGAAAGAATAATGTTGATCAATTCCCTATTATTTCAAGCAAGAAATGTCCTAAACAAGATCCTTCCAGTGTGGACAGCGGGATTGCTGTGACGTACATTATCAAGCGATTATCGGAAGGTCTTGAATTAGAGTCTACCTTTAAAAAAGGTGCCATGACTCAGCAGAGAGCACATGTTTTGGGAAGGTTCGTAAATGACAACAATGACGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

100

Amino Acids

11.35

Weight (kDa)

9.26

Isoelectric Point (pI)

31.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 239
AccI GTMKAC 1 cut(s) 224
AciI CCGC 1 cut(s) 168
AclWI GGATC 1 cut(s) 143
AfaI GTAC 1 cut(s) 185
AflIII ACRYGT 2 cut(s) 13, 262
AgsI TTSAA 3 cut(s) 52, 126, 215
AjnI CCWGG 1 cut(s) 83
Alw21I GWGCWC 1 cut(s) 262
AlwI GGATC 1 cut(s) 143
BanI GGYRCC 1 cut(s) 239
Bbv12I GWGCWC 1 cut(s) 262
BciT130I CCWGG 1 cut(s) 85
BclI TGATCA 1 cut(s) 106
Bme1390I CCNGG 1 cut(s) 85
BmiI GGNNCC 1 cut(s) 241
BmrFI CCNGG 1 cut(s) 85
Bse1I ACTGG 1 cut(s) 156
BseBI CCWGG 1 cut(s) 85
BseMII CTCAG 1 cut(s) 263
BseNI ACTGG 1 cut(s) 156
BshNI GGYRCC 1 cut(s) 239
BsiHKAI GWGCWC 1 cut(s) 262
BslFI GGGAC 1 cut(s) 86
BsmFI GGGAC 1 cut(s) 86
Bsp1286I GDGCHC 1 cut(s) 262
Bsp143I GATC 2 cut(s) 106, 148
BspACI CCGC 1 cut(s) 168
BspCNI CTCAG 1 cut(s) 262
BspLI GGNNCC 1 cut(s) 241
BspPI GGATC 1 cut(s) 143
BspT107I GGYRCC 1 cut(s) 239
BsrI ACTGG 1 cut(s) 156
BssMI GATC 2 cut(s) 106, 148
Bst2UI CCWGG 1 cut(s) 85
Bst4CI ACNGT 2 cut(s) 36, 299
BstDEI CTNAG 1 cut(s) 249
BstKTI GATC 2 cut(s) 109, 151
BstMBI GATC 2 cut(s) 106, 148
BstNI CCWGG 1 cut(s) 85
BstNSI RCATGY 2 cut(s) 17, 266
BstSCI CCNGG 1 cut(s) 83
BstX2I RGATCY 1 cut(s) 148
BstYI RGATCY 1 cut(s) 148
BtsIMutI CAGTG 1 cut(s) 163
CsiI ACCWGGT 1 cut(s) 83
Csp6I GTAC 1 cut(s) 184
CviAII CATG 3 cut(s) 14, 244, 263
CviQI GTAC 1 cut(s) 184
DdeI CTNAG 1 cut(s) 249
DpnI GATC 2 cut(s) 108, 150
DpnII GATC 2 cut(s) 106, 148
DraI TTTAAA 1 cut(s) 232
EcoRII CCWGG 1 cut(s) 83
FaeI CATG 3 cut(s) 17, 247, 266
FaiI YATR 4 cut(s) 7, 15, 245, 264
FaqI GGGAC 1 cut(s) 86
FatI CATG 3 cut(s) 13, 243, 262
FauI CCCGC 1 cut(s) 161
FbaI TGATCA 1 cut(s) 106
FblI GTMKAC 1 cut(s) 224
Hin1II CATG 3 cut(s) 17, 247, 266
HinfI GANTC 2 cut(s) 221, 247
Hpy166II GTNNAC 2 cut(s) 163, 225
Hpy188I TCNGA 1 cut(s) 205
Hpy188III TCNNGA 1 cut(s) 212
Hpy8I GTNNAC 2 cut(s) 163, 225
HpyAV CCTTC 4 cut(s) 20, 162, 200, 267
HpyCH4III ACNGT 2 cut(s) 36, 299
HpyCH4IV ACGT 2 cut(s) 47, 182
HpyF3I CTNAG 1 cut(s) 249
HpySE526I ACGT 2 cut(s) 47, 182
Hsp92II CATG 3 cut(s) 17, 247, 266
Ksp22I TGATCA 1 cut(s) 106
Kzo9I GATC 2 cut(s) 106, 148
LpnPI CCDG 4 cut(s) 55, 70, 97, 169
MabI ACCWGGT 1 cut(s) 83
MaeII ACGT 2 cut(s) 47, 182
MaeIII GTNAC 1 cut(s) 178
MalI GATC 2 cut(s) 108, 150
MboI GATC 2 cut(s) 106, 148
MflI RGATCY 1 cut(s) 148
MhlI GDGCHC 1 cut(s) 262
MluCI AATT 2 cut(s) 110, 215
MlyI GAGTC 2 cut(s) 230, 241
MseI TTAA 1 cut(s) 231
MspA1I CMGCKG 1 cut(s) 168
MspR9I CCNGG 1 cut(s) 85
MvaI CCWGG 1 cut(s) 85
NdeII GATC 2 cut(s) 106, 148
NlaIII CATG 3 cut(s) 17, 247, 266
NlaIV GGNNCC 1 cut(s) 241
NmuCI GTSAC 1 cut(s) 178
NspI RCATGY 2 cut(s) 17, 266
PciI ACATGT 2 cut(s) 13, 262
PleI GAGTC 2 cut(s) 229, 241
PpsI GAGTC 2 cut(s) 229, 241
PscI ACATGT 2 cut(s) 13, 262
Psp6I CCWGG 1 cut(s) 83
PspGI CCWGG 1 cut(s) 83
PspN4I GGNNCC 1 cut(s) 241
PsuI RGATCY 1 cut(s) 148
RsaI GTAC 1 cut(s) 185
RsaNI GTAC 1 cut(s) 184
SaqAI TTAA 1 cut(s) 231
Sau3AI GATC 2 cut(s) 106, 148
SchI GAGTC 2 cut(s) 230, 241
ScrFI CCNGG 1 cut(s) 85
SduI GDGCHC 1 cut(s) 262
SetI ASST 7 cut(s) 50, 86, 185, 211, 230, 241, 278
SexAI ACCWGGT 1 cut(s) 83
Sse9I AATT 2 cut(s) 110, 215
SsiI CCGC 1 cut(s) 168
StyD4I CCNGG 1 cut(s) 83
TaaI ACNGT 2 cut(s) 36, 299
TaiI ACGT 2 cut(s) 50, 185
TasI AATT 2 cut(s) 110, 215
Tru1I TTAA 1 cut(s) 231
Tru9I TTAA 1 cut(s) 231
TscAI CASTG 1 cut(s) 163
TseFI GTSAC 1 cut(s) 178
Tsp45I GTSAC 1 cut(s) 178
TspRI CASTG 1 cut(s) 163
XceI RCATGY 2 cut(s) 17, 266
XmiI GTMKAC 1 cut(s) 224
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.