Rh7AG368300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000441
Physical Location & Seq
Forward (+)
47487637 .. 47498549
10913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG368300.1

Sequence Viewer

Length: 531 bp
ATGGAAGAGGAAATTGAGCAACAACAATCCCTAAGTGCACTTAAAACACCTAGCATTGAGAAGAGTGTGCTAGCAACTACCTGTACTAAAGAAGTGGGCTCTAAAGAGAAGTATGTGGATGATATTGACCCTAGTAAGATGTTTAAGTTGTTACCAACTCAATTTTACATAGATGATGGTCAGCTAGGGCCTTCAAGCACAAAGGTGCATAGTAGAGATATGGAGAAAAGGCTTCAAGAGTTGGCTGATTTGCTTGAAATTGAACAAGCTCATAATAAGCACCTTCGTAGTGAAAATGAGAGACTGCAATCAGAGATTAATATGCTCTGTCCGAGTAACAAAGTGGTTAAGAATGAGAATCAGATTTCAAGGAACTTGAGATCGAGGTCTAAATGTAAAAAACCCCTTCTTTTAGCCGATTCATCACTGAGAAGGCCAAGAAAGGAAAAGCAAAAGTTGAAATTGTTAACAAGGATGATGATGATTTTGTCTTACAATCGCCCTCGAAGAAAAAGAAGATACCAACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

20.67

Weight (kDa)

9.73

Isoelectric Point (pI)

83.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 85
AgsI TTSAA 6 cut(s) 195, 236, 257, 263, 369, 460
AleI CACNNNNGTG 1 cut(s) 203
AluBI AGCT 2 cut(s) 184, 269
AluI AGCT 2 cut(s) 184, 269
Alw21I GWGCWC 1 cut(s) 40
Alw26I GTCTC 1 cut(s) 295
Alw44I GTGCAC 1 cut(s) 36
AoxI GGCC 2 cut(s) 188, 434
ApaLI GTGCAC 1 cut(s) 36
AseI ATTAAT 1 cut(s) 318
AspS9I GGNCC 1 cut(s) 188
AsuNHI GCTAGC 1 cut(s) 70
BaeGI GKGCMC 1 cut(s) 40
BanII GRGCYC 1 cut(s) 101
Bbv12I GWGCWC 1 cut(s) 40
BccI CCATC 1 cut(s) 170
BcoDI GTCTC 1 cut(s) 295
BfaI CTAG 4 cut(s) 51, 71, 132, 185
BmgT120I GGNCC 1 cut(s) 188
BmtI GCTAGC 1 cut(s) 74
BpuEI CTTGAG 1 cut(s) 397
BseGI GGATG 2 cut(s) 124, 480
BseMII CTCAG 1 cut(s) 419
BseSI GKGCMC 1 cut(s) 40
BshFI GGCC 2 cut(s) 190, 436
BsiHKAI GWGCWC 1 cut(s) 40
BsmAI GTCTC 1 cut(s) 295
BsnI GGCC 2 cut(s) 190, 436
Bsp1286I GDGCHC 2 cut(s) 40, 101
Bsp143I GATC 1 cut(s) 380
BspANI GGCC 2 cut(s) 190, 436
BspCNI CTCAG 1 cut(s) 420
BspOI GCTAGC 1 cut(s) 74
BssMI GATC 1 cut(s) 380
Bst4CI ACNGT 1 cut(s) 528
Bst6I CTCTTC 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 72
BstDEI CTNAG 2 cut(s) 32, 428
BstF5I GGATG 2 cut(s) 124, 480
BstKTI GATC 1 cut(s) 383
BstMAI GTCTC 1 cut(s) 295
BstMBI GATC 1 cut(s) 380
BstSLI GKGCMC 1 cut(s) 40
BsuRI GGCC 2 cut(s) 190, 436
BtsCI GGATG 2 cut(s) 124, 480
BtsIMutI CAGTG 1 cut(s) 425
Cac8I GCNNGC 1 cut(s) 72
Cfr13I GGNCC 1 cut(s) 188
Csp6I GTAC 1 cut(s) 84
CviJI RGCY 8 cut(s) 99, 184, 190, 232, 245, 269, 416, 436
CviKI_1 RGCY 8 cut(s) 99, 184, 190, 232, 245, 269, 416, 436
CviQI GTAC 1 cut(s) 84
DdeI CTNAG 2 cut(s) 32, 428
DpnI GATC 1 cut(s) 382
DpnII GATC 1 cut(s) 380
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
Eco24I GRGCYC 1 cut(s) 101
EcoO109I RGGNCCY 1 cut(s) 188
EcoT38I GRGCYC 1 cut(s) 101
FaiI YATR 6 cut(s) 114, 170, 210, 221, 273, 323
FokI GGATG 2 cut(s) 131, 487
FriOI GRGCYC 1 cut(s) 101
FspBI CTAG 4 cut(s) 51, 71, 132, 185
HaeIII GGCC 2 cut(s) 190, 436
HincII GTYRAC 1 cut(s) 468
HindII GTYRAC 1 cut(s) 468
HinfI GANTC 2 cut(s) 358, 419
HpaI GTTAAC 1 cut(s) 468
Hpy166II GTNNAC 2 cut(s) 38, 468
Hpy188I TCNGA 3 cut(s) 313, 333, 363
Hpy188III TCNNGA 1 cut(s) 236
Hpy8I GTNNAC 2 cut(s) 38, 468
HpyAV CCTTC 4 cut(s) 201, 293, 416, 426
HpyCH4III ACNGT 1 cut(s) 528
HpyCH4V TGCA 3 cut(s) 38, 208, 307
HpyF3I CTNAG 2 cut(s) 32, 428
KspAI GTTAAC 1 cut(s) 468
Kzo9I GATC 1 cut(s) 380
LpnPI CCDG 1 cut(s) 94
MaeI CTAG 4 cut(s) 51, 71, 132, 185
MaeIII GTNAC 2 cut(s) 150, 335
MalI GATC 1 cut(s) 382
MboI GATC 1 cut(s) 380
MboII GAAGA 4 cut(s) 17, 73, 519, 528
MhlI GDGCHC 2 cut(s) 40, 101
MluCI AATT 4 cut(s) 12, 161, 258, 461
MnlI CCTC 2 cut(s) 378, 513
MseI TTAA 5 cut(s) 42, 144, 318, 348, 467
MslI CAYNNNNRTG 1 cut(s) 203
NdeII GATC 1 cut(s) 380
NheI GCTAGC 1 cut(s) 70
OliI CACNNNNGTG 1 cut(s) 203
PfeI GAWTC 2 cut(s) 358, 419
PshBI ATTAAT 1 cut(s) 318
PspPI GGNCC 1 cut(s) 188
RsaI GTAC 1 cut(s) 85
RsaNI GTAC 1 cut(s) 84
RseI CAYNNNNRTG 1 cut(s) 203
SaqAI TTAA 5 cut(s) 42, 144, 318, 348, 467
Sau3AI GATC 1 cut(s) 380
Sau96I GGNCC 1 cut(s) 188
SduI GDGCHC 2 cut(s) 40, 101
SetI ASST 7 cut(s) 52, 83, 186, 207, 271, 285, 389
SmiMI CAYNNNNRTG 1 cut(s) 203
SmlI CTYRAG 1 cut(s) 376
SmoI CTYRAG 1 cut(s) 376
Sse9I AATT 4 cut(s) 12, 161, 258, 461
SspMI CTAG 4 cut(s) 51, 71, 132, 185
TaaI ACNGT 1 cut(s) 528
TaqI TCGA 2 cut(s) 383, 505
TasI AATT 4 cut(s) 12, 161, 258, 461
TatI WGTACW 1 cut(s) 83
TfiI GAWTC 2 cut(s) 358, 419
Tru1I TTAA 5 cut(s) 42, 144, 318, 348, 467
Tru9I TTAA 5 cut(s) 42, 144, 318, 348, 467
TscAI CASTG 1 cut(s) 432
TspDTI ATGAA 1 cut(s) 411
TspRI CASTG 1 cut(s) 432
VneI GTGCAC 1 cut(s) 36
VspI ATTAAT 1 cut(s) 318
XspI CTAG 4 cut(s) 51, 71, 132, 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.