Rroxscaffold_7G00210800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000441
Physical Location & Seq
Reverse (-)
61243804 .. 61248433
4630 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00210800.1

Sequence Viewer

Length: 219 bp
ATGGAGCTCCTCGTTAAGGTGATTATGGTCAGCAGCAGTGGATACTACAAGTTAATTTTGATGGCTAAAGAGTACACCCACCTGGAATTTAGGTGCGACCTTCTCAAGTTTGGACGTGTTATGACCGACGAGTTAAGGGCTGAAATTATTGAAGTGAAGCTTGATCTGATTGCACCGTCCATCATCTACAATAACATGGGCCCTATTATGGAAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

72

Amino Acids

8.35

Weight (kDa)

5.24

Isoelectric Point (pI)

32.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 86
AfaI GTAC 1 cut(s) 74
AfiI CCNNNNNNNGG 2 cut(s) 16, 208
AflIII ACRYGT 1 cut(s) 115
AgsI TTSAA 1 cut(s) 152
AjiI CACGTC 1 cut(s) 116
AjnI CCWGG 1 cut(s) 81
AluBI AGCT 2 cut(s) 7, 160
AluI AGCT 2 cut(s) 7, 160
Alw21I GWGCWC 1 cut(s) 9
AoxI GGCC 1 cut(s) 199
ApaI GGGCCC 1 cut(s) 203
ApeKI GCWGC 1 cut(s) 33
ApoI RAATTY 1 cut(s) 86
AspS9I GGNCC 2 cut(s) 199, 200
AsuHPI GGTGA 1 cut(s) 31
BaeGI GKGCMC 1 cut(s) 203
BanII GRGCYC 2 cut(s) 9, 203
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 1 cut(s) 45
BccI CCATC 2 cut(s) 55, 188
BciT130I CCWGG 1 cut(s) 83
BciVI GTATCC 1 cut(s) 35
BfuI GTATCC 1 cut(s) 35
BisI GCNGC 1 cut(s) 34
BlsI GCNGC 1 cut(s) 35
Bme1390I CCNGG 1 cut(s) 83
BmgBI CACGTC 1 cut(s) 116
BmgT120I GGNCC 2 cut(s) 199, 200
BmiI GGNNCC 1 cut(s) 201
BmrFI CCNGG 1 cut(s) 83
BpuEI CTTGAG 1 cut(s) 89
Bsc4I CCNNNNNNNGG 2 cut(s) 16, 208
BseBI CCWGG 1 cut(s) 83
BseLI CCNNNNNNNGG 2 cut(s) 16, 208
BseSI GKGCMC 1 cut(s) 203
BseXI GCAGC 1 cut(s) 45
BshFI GGCC 1 cut(s) 201
BsiHKAI GWGCWC 1 cut(s) 9
BslI CCNNNNNNNGG 2 cut(s) 16, 208
BsnI GGCC 1 cut(s) 201
Bsp120I GGGCCC 1 cut(s) 199
Bsp1286I GDGCHC 2 cut(s) 9, 203
Bsp143I GATC 1 cut(s) 163
BspANI GGCC 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 201
BssMI GATC 1 cut(s) 163
Bst2UI CCWGG 1 cut(s) 83
Bst4CI ACNGT 1 cut(s) 177
BstENI CCTNNNNNAGG 1 cut(s) 14
BstKTI GATC 1 cut(s) 166
BstMBI GATC 1 cut(s) 163
BstNI CCWGG 1 cut(s) 83
BstSCI CCNGG 1 cut(s) 81
BstSLI GKGCMC 1 cut(s) 203
BstV1I GCAGC 1 cut(s) 45
BsuI GTATCC 1 cut(s) 35
BsuRI GGCC 1 cut(s) 201
BtrI CACGTC 1 cut(s) 116
BtsI GCAGTG 1 cut(s) 43
BtsIMutI CAGTG 1 cut(s) 43
Cfr13I GGNCC 2 cut(s) 199, 200
Csp6I GTAC 1 cut(s) 73
CviAII CATG 1 cut(s) 196
CviJI RGCY 5 cut(s) 7, 65, 140, 160, 201
CviKI_1 RGCY 5 cut(s) 7, 65, 140, 160, 201
CviQI GTAC 1 cut(s) 73
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
Ecl136II GAGCTC 1 cut(s) 7
Eco24I GRGCYC 2 cut(s) 9, 203
Eco53kI GAGCTC 1 cut(s) 7
EcoICRI GAGCTC 1 cut(s) 7
EcoNI CCTNNNNNAGG 1 cut(s) 14
EcoO109I RGGNCCY 1 cut(s) 200
EcoRII CCWGG 1 cut(s) 81
EcoT38I GRGCYC 2 cut(s) 9, 203
FaeI CATG 1 cut(s) 199
FaiI YATR 4 cut(s) 26, 122, 197, 209
FalI AAGNNNNNCTT 2 cut(s) 144, 176
FatI CATG 1 cut(s) 195
Fnu4HI GCNGC 1 cut(s) 34
FriOI GRGCYC 2 cut(s) 9, 203
Fsp4HI GCNGC 1 cut(s) 34
GluI GCNGC 1 cut(s) 34
HaeIII GGCC 1 cut(s) 201
Hin1II CATG 1 cut(s) 199
HindIII AAGCTT 1 cut(s) 158
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 1 cut(s) 75
Hpy188I TCNGA 1 cut(s) 168
Hpy8I GTNNAC 1 cut(s) 75
Hpy99I CGWCG 1 cut(s) 131
HpyAV CCTTC 1 cut(s) 110
HpyCH4III ACNGT 1 cut(s) 177
HpyCH4IV ACGT 1 cut(s) 115
HpyCH4V TGCA 1 cut(s) 173
HpySE526I ACGT 1 cut(s) 115
Hsp92II CATG 1 cut(s) 199
Kzo9I GATC 1 cut(s) 163
LmnI GCTCC 2 cut(s) 4, 12
LpnPI CCDG 2 cut(s) 68, 95
Lsp1109I GCAGC 1 cut(s) 45
MaeII ACGT 1 cut(s) 115
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MhlI GDGCHC 2 cut(s) 9, 203
MluCI AATT 4 cut(s) 54, 86, 144, 214
MnlI CCTC 1 cut(s) 20
MseI TTAA 4 cut(s) 15, 53, 134, 217
MspR9I CCNGG 1 cut(s) 83
MvaI CCWGG 1 cut(s) 83
NdeII GATC 1 cut(s) 163
NlaIII CATG 1 cut(s) 199
NlaIV GGNNCC 1 cut(s) 201
PkrI GCNGC 1 cut(s) 35
Psp124BI GAGCTC 1 cut(s) 9
Psp6I CCWGG 1 cut(s) 81
PspGI CCWGG 1 cut(s) 81
PspN4I GGNNCC 1 cut(s) 201
PspOMI GGGCCC 1 cut(s) 199
PspPI GGNCC 2 cut(s) 199, 200
RsaI GTAC 1 cut(s) 74
RsaNI GTAC 1 cut(s) 73
SacI GAGCTC 1 cut(s) 9
SaqAI TTAA 4 cut(s) 15, 53, 134, 217
SatI GCNGC 1 cut(s) 34
Sau3AI GATC 1 cut(s) 163
Sau96I GGNCC 2 cut(s) 199, 200
ScrFI CCNGG 1 cut(s) 83
SduI GDGCHC 2 cut(s) 9, 203
SetI ASST 7 cut(s) 9, 21, 84, 95, 102, 118, 162
SgeI CNNG 9 cut(s) 23, 61, 94, 95, 118, 128, 142, 173, 208
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
Sse9I AATT 4 cut(s) 54, 86, 144, 214
SstI GAGCTC 1 cut(s) 9
StyD4I CCNGG 1 cut(s) 81
TaaI ACNGT 1 cut(s) 177
TaiI ACGT 1 cut(s) 118
TaqII GACCGA 1 cut(s) 140
TasI AATT 4 cut(s) 54, 86, 144, 214
TatI WGTACW 1 cut(s) 72
Tru1I TTAA 4 cut(s) 15, 53, 134, 217
Tru9I TTAA 4 cut(s) 15, 53, 134, 217
TscAI CASTG 1 cut(s) 43
TseI GCWGC 1 cut(s) 33
TspRI CASTG 1 cut(s) 43
XagI CCTNNNNNAGG 1 cut(s) 14
XapI RAATTY 1 cut(s) 86
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.