RchiOBHm_Chr1g0331351

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000441
Physical Location & Seq
Reverse (-)
21160165 .. 21160838
674 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56038

Sequence Viewer

Length: 255 bp
ATGCTTCTTGCCTGGTGCAGAGGTAGCTTCACTAACAAAGCTTTAATCAAAAGTTTTCTATGTGGTATGACCTTAATCAAAGGTAGAAGTTTGTGTGTATTGGATAATGTGGAAATCAATTACCTCTTTTGTCTTTTGTTAATGTTGTTGCATGGTCCAGAGGTTGCTTTGCTAATCAAAGGTTTTCTTTTTCTTTGGTCTGACCTTGATCAAAGGTTTATCCGAATATGGATCCGAATACAAGCTCTCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

84

Amino Acids

9.76

Weight (kDa)

8.86

Isoelectric Point (pI)

17.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 226, 239
AjnI CCWGG 1 cut(s) 11
AluBI AGCT 3 cut(s) 27, 41, 245
AluI AGCT 3 cut(s) 27, 41, 245
AlwI GGATC 2 cut(s) 226, 239
AspS9I GGNCC 1 cut(s) 155
AvaII GGWCC 1 cut(s) 155
BamHI GGATCC 1 cut(s) 231
BciT130I CCWGG 1 cut(s) 13
BclI TGATCA 1 cut(s) 208
Bme1390I CCNGG 1 cut(s) 13
Bme18I GGWCC 1 cut(s) 155
BmgT120I GGNCC 1 cut(s) 155
BmiI GGNNCC 1 cut(s) 233
BmrFI CCNGG 1 cut(s) 13
BseBI CCWGG 1 cut(s) 13
BsgI GTGCAG 1 cut(s) 37
Bsp143I GATC 2 cut(s) 208, 231
BspLI GGNNCC 1 cut(s) 233
BspPI GGATC 2 cut(s) 226, 239
BssMI GATC 2 cut(s) 208, 231
Bst2UI CCWGG 1 cut(s) 13
BstKTI GATC 2 cut(s) 211, 234
BstMBI GATC 2 cut(s) 208, 231
BstMWI GCNNNNNNNGC 1 cut(s) 24
BstNI CCWGG 1 cut(s) 13
BstSCI CCNGG 1 cut(s) 11
BstX2I RGATCY 1 cut(s) 231
BstYI RGATCY 1 cut(s) 231
Cfr13I GGNCC 1 cut(s) 155
CviAII CATG 1 cut(s) 152
CviJI RGCY 3 cut(s) 27, 41, 245
CviKI_1 RGCY 3 cut(s) 27, 41, 245
DpnI GATC 2 cut(s) 210, 233
DpnII GATC 2 cut(s) 208, 231
Eco47I GGWCC 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 11
FaeI CATG 1 cut(s) 155
FaiI YATR 4 cut(s) 61, 68, 153, 229
FalI AAGNNNNNCTT 2 cut(s) 171, 203
FatI CATG 1 cut(s) 151
FbaI TGATCA 1 cut(s) 208
Hin1II CATG 1 cut(s) 155
HindIII AAGCTT 1 cut(s) 39
Hpy188I TCNGA 3 cut(s) 202, 224, 236
Hpy188III TCNNGA 2 cut(s) 158, 248
HpyCH4V TGCA 2 cut(s) 18, 151
HpyF10VI GCNNNNNNNGC 1 cut(s) 24
Hsp92II CATG 1 cut(s) 155
Ksp22I TGATCA 1 cut(s) 208
Kzo9I GATC 2 cut(s) 208, 231
LpnPI CCDG 2 cut(s) 25, 171
MalI GATC 2 cut(s) 210, 233
MboI GATC 2 cut(s) 208, 231
MflI RGATCY 1 cut(s) 231
MluCI AATT 1 cut(s) 118
MnlI CCTC 3 cut(s) 14, 134, 154
MseI TTAA 3 cut(s) 44, 74, 140
MspR9I CCNGG 1 cut(s) 13
MvaI CCWGG 1 cut(s) 13
MwoI GCNNNNNNNGC 1 cut(s) 24
NdeII GATC 2 cut(s) 208, 231
NlaIII CATG 1 cut(s) 155
NlaIV GGNNCC 1 cut(s) 233
Psp6I CCWGG 1 cut(s) 11
PspGI CCWGG 1 cut(s) 11
PspN4I GGNNCC 1 cut(s) 233
PspPI GGNCC 1 cut(s) 155
PsuI RGATCY 1 cut(s) 231
SaqAI TTAA 3 cut(s) 44, 74, 140
Sau3AI GATC 2 cut(s) 208, 231
Sau96I GGNCC 1 cut(s) 155
ScrFI CCNGG 1 cut(s) 13
SgeI CNNG 6 cut(s) 20, 24, 25, 164, 170, 218
SinI GGWCC 1 cut(s) 155
Sse9I AATT 1 cut(s) 118
StyD4I CCNGG 1 cut(s) 11
TaqI TCGA 1 cut(s) 249
TasI AATT 1 cut(s) 118
Tru1I TTAA 3 cut(s) 44, 74, 140
Tru9I TTAA 3 cut(s) 44, 74, 140
VpaK11BI GGWCC 1 cut(s) 155
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.