Rh5CG103300

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000441
Physical Location & Seq
Reverse (-)
8284297 .. 8287210
2914 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG103300.1

Sequence Viewer

Length: 1902 bp
ATGACCGACGAGTTAAGGGCTGAAATTACTGAAGTGAAGCTTAATCTGATAGAGTCCACACCGTTCAGGGATTTGTTTAGAGCTTTTTATGAGCGGCAAATAATAGACTTTGCTTGTAGGAAGTCTGATAGTGACATCGTATCTCTTTTAAAATGCTTTGACAAGGAAAAAAACTCGTTTCAGTTTGGGGAAATTACTGGTACAATATCTGTATGTGACATTGCAGAACTGTTTGGTTTGAATATTGAAGGCCGTGAGATCAACCTTAACCAGAAGAAGAGAAAAGGGGATTCTGATTTCATTAAAAGACGATTCCCTGGAGTGAAAAGGTTGTCCAAGGTGATCCTGGAGCAACAAATCAAAGATGTATCTAAACTGAGGGGGCTTGAGAATGAATGTGATTTTGTTAGGTTGGTTTGTCTCTATTTTTGTGTAACACTATTTTTCTGCAATAGTGGCAATGACCTTAGCTGGTTTATAGTACCGTACATAGAGGACCTAGATTCAATGTCTCTCTATGCCTGGGCACCCGCAGTGAAGAATTACTTGGACAACTCCCTTATGAATGGTCGGCCTGAAAGCGCTTGTGGTTGTCTCATTGCCCTGTTGTTTTGGTTTTGTGAACGTACCCGGTTCATTGAACCAATTAAAGGACGCGATGAACTGAAGCCAAAATTCTTGAAATGGAATTTACTAGAGTTGTATGCAAGGATGAAGGTTGAGGATATACATGAAATCAAGGAAAGTGATCAACAACAATCCCTTGGTGAACTTAAAACACCTAGCAATGAGAAGAGTGTGCTTGCTATTACCTGTACTAAAGAAGGGGGCTCTGAAGAGAAGTGTGTGGATGATTTTGAACCTGGTAAGATGTTTCAGTTGTTACCAACTCAATTTTACATAGACGATGGTCAGCCAGGGCCTTCAAGCATAGAGGTGCGTACTAAAGATATGGAGGCAAGGGTTCAAGAGTTGGCTGATTTGCTTGAAATTGAACAAGCTCATAATAAGCGCCTTCATAGTGAAAATGAGAGACTGCAGACAGAGATTAATATGCTCCGTCCGAGTAACAAAGTGGTTGAGAATGAGAATCAGATTTCAATGAACCTGAGGTCGAGGTCTAAATGCAAAAAACCCCTTATTTTAGCCGACTTCATCACTGAGAGGACCAAGAAAGGAAAAGCAAAAGCTGAAATTATTAAGAAGGACGATGATGATTTTGTCGTACAATCGCCTTCCAAGAAAAAGAAGACACCAACAGTGGATCAAAATATAGGTGTGAGGAGACTACGGGTTGGTAAGTGCATGACGATTCCTGATGCAGAGAGGCTTAAGGTTTATTTGGCTAAAAGAGAGAACAAGTCGCCCCTGTGGCATGGAGTGAAGTCAGGAGTATTTGTTAAGGATGCACTAGCCATCTTGAATGAGGAAGCTGTCGGTGTGCAGGCTATGAATGCATATCTTGAAATCTTAAGTTACAAGCCTCCAGAGCAGGGAGACCCTGAATCTTTGTTTATGTCCACGTTTGATTGGCATGGTGAAATCTCAAGACGCTTAGCATTTTTGAAAGATAAGGGTAAATCAATTATTAAGAGCAAGATGATATGGAAACATGTGAAAAGAGAGGGGCAAGTGTGTCTATTTACTTTCACTGTATCAAACAAAGACAGGGACTTGCTTACCTGGTTGGGAAAGAATAATGTTGATCAATTCCCTATTATTTCAAGTAAGGAATGTCCTAAACAAGATCCTTCCAGTGTGGACAGCGGGATTGCTGTGACGTACATTATCAAGCGATTATCGGAAGGTCTTGAATTAGAGTCTACCTTTAAAAAAGGTGCCATGACTCAGCAGAGAGCACATGTTTTGGGAAGGTTCTTAAATAACAACAATGACAGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

633

Amino Acids

72.62

Weight (kDa)

8.3

Isoelectric Point (pI)

52.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 38 - 234 3.8e-11 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 526, 1838
AccBSI CCGCTC 1 cut(s) 94
AccI GTMKAC 1 cut(s) 1823
AccII CGCG 1 cut(s) 657
AciI CCGC 3 cut(s) 94, 531, 1767
AclWI GGATC 3 cut(s) 337, 1272, 1742
AcsI RAATTY 2 cut(s) 674, 688
AcuI CTGAAG 3 cut(s) 51, 686, 855
AfaI GTAC 8 cut(s) 202, 483, 488, 628, 817, 943, 1227, 1784
AfeI AGCGCT 1 cut(s) 583
AfiI CCNNNNNNNGG 2 cut(s) 650, 1493
AflII CTTAAG 2 cut(s) 1331, 1471
AflIII ACRYGT 2 cut(s) 1612, 1861
AjnI CCWGG 6 cut(s) 316, 345, 521, 862, 916, 1682
AjuI GAANNNNNNNTTGG 2 cut(s) 530, 562
AluBI AGCT 6 cut(s) 40, 83, 471, 1001, 1190, 1433
AluI AGCT 6 cut(s) 40, 83, 471, 1001, 1190, 1433
Alw21I GWGCWC 1 cut(s) 1861
Alw26I GTCTC 6 cut(s) 425, 516, 599, 1027, 1279, 1491
AlwI GGATC 3 cut(s) 337, 1272, 1742
Aor51HI AGCGCT 1 cut(s) 583
AoxI GGCC 3 cut(s) 250, 572, 920
ApoI RAATTY 2 cut(s) 674, 688
AseI ATTAAT 1 cut(s) 1050
AspLEI GCGC 2 cut(s) 584, 1014
AspS9I GGNCC 3 cut(s) 496, 920, 1167
AsuC2I CCSGG 1 cut(s) 631
AsuHPI GGTGA 3 cut(s) 352, 779, 1550
AvaII GGWCC 2 cut(s) 496, 1167
AxyI CCTNAGG 1 cut(s) 1109
BaeGI GKGCMC 1 cut(s) 529
BanI GGYRCC 2 cut(s) 526, 1838
BanII GRGCYC 1 cut(s) 833
BbsI GAAGAC 1 cut(s) 1256
Bbv12I GWGCWC 1 cut(s) 1861
BccI CCATC 2 cut(s) 902, 1424
BceAI ACGGC 1 cut(s) 237
BciT130I CCWGG 6 cut(s) 318, 347, 523, 864, 918, 1684
BclI TGATCA 2 cut(s) 748, 1705
BcnI CCSGG 1 cut(s) 631
BcoDI GTCTC 6 cut(s) 425, 516, 599, 1027, 1279, 1491
BfaI CTAG 4 cut(s) 500, 695, 783, 1412
BfmI CTRYAG 1 cut(s) 1037
BfoI RGCGCY 2 cut(s) 585, 1015
BfrI CTTAAG 2 cut(s) 1331, 1471
BglI GCCNNNNNGGC 1 cut(s) 1372
BisI GCNGC 1 cut(s) 95
BlpI GCTNAGC 1 cut(s) 1555
BlsI GCNGC 1 cut(s) 96
Bme1390I CCNGG 7 cut(s) 318, 347, 523, 631, 864, 918, 1684
Bme18I GGWCC 2 cut(s) 496, 1167
BmgT120I GGNCC 3 cut(s) 496, 920, 1167
BmiI GGNNCC 2 cut(s) 528, 1840
BmrFI CCNGG 7 cut(s) 318, 347, 523, 631, 864, 918, 1684
BmsI GCATC 2 cut(s) 1309, 1396
BoxI GACNNNNGTC 1 cut(s) 909
BpiI GAAGAC 1 cut(s) 1256
BpmI CTGGAG 3 cut(s) 339, 368, 1470
Bpu10I CCTNAGC 1 cut(s) 467
Bpu1102I GCTNAGC 1 cut(s) 1555
BpuEI CTTGAG 2 cut(s) 407, 1531
BpuMI CCSGG 1 cut(s) 631
BsaI GGTCTC 1 cut(s) 1491
BsaJI CCNNGG 5 cut(s) 316, 336, 522, 763, 917
BsaXI ACNNNNNCTCC 2 cut(s) 1383, 1413
Bsc4I CCNNNNNNNGG 2 cut(s) 650, 1493
Bse1I ACTGG 2 cut(s) 202, 1755
Bse21I CCTNAGG 1 cut(s) 1109
Bse3DI GCAATG 4 cut(s) 219, 466, 597, 793
BseBI CCWGG 6 cut(s) 318, 347, 523, 864, 918, 1684
BseDI CCNNGG 5 cut(s) 316, 336, 522, 763, 917
BseGI GGATG 3 cut(s) 717, 856, 1411
BseLI CCNNNNNNNGG 2 cut(s) 650, 1493
BseMI GCAATG 4 cut(s) 219, 466, 597, 793
BseMII CTCAG 4 cut(s) 368, 1100, 1152, 1862
BseNI ACTGG 2 cut(s) 202, 1755
BseRI GAGGAG 1 cut(s) 1297
BseSI GKGCMC 1 cut(s) 529
BsgI GTGCAG 1 cut(s) 1463
Bsh1236I CGCG 1 cut(s) 657
BshFI GGCC 3 cut(s) 252, 574, 922
BshNI GGYRCC 2 cut(s) 526, 1838
BsiHKAI GWGCWC 1 cut(s) 1861
BsiSI CCGG 1 cut(s) 631
BslFI GGGAC 1 cut(s) 1685
BslI CCNNNNNNNGG 2 cut(s) 650, 1493
BsmAI GTCTC 6 cut(s) 425, 516, 599, 1027, 1279, 1491
BsmFI GGGAC 1 cut(s) 1685
BsmI GAATGC 1 cut(s) 1459
BsnI GGCC 3 cut(s) 252, 574, 922
Bso31I GGTCTC 1 cut(s) 1491
Bsp1286I GDGCHC 3 cut(s) 529, 833, 1861
Bsp143I GATC 6 cut(s) 258, 342, 748, 1264, 1705, 1747
Bsp1720I GCTNAGC 1 cut(s) 1555
BspACI CCGC 3 cut(s) 94, 531, 1767
BspANI GGCC 3 cut(s) 252, 574, 922
BspCNI CTCAG 4 cut(s) 369, 1101, 1153, 1861
BspFNI CGCG 1 cut(s) 657
BspLI GGNNCC 2 cut(s) 528, 1840
BspMAI CTGCAG 1 cut(s) 1041
BspPI GGATC 3 cut(s) 337, 1272, 1742
BspT107I GGYRCC 2 cut(s) 526, 1838
BspTI CTTAAG 2 cut(s) 1331, 1471
BspTNI GGTCTC 1 cut(s) 1491
BsrBI CCGCTC 1 cut(s) 94
BsrDI GCAATG 4 cut(s) 219, 466, 597, 793
BsrI ACTGG 2 cut(s) 202, 1755
BssECI CCNNGG 5 cut(s) 316, 336, 522, 763, 917
BssMI GATC 6 cut(s) 258, 342, 748, 1264, 1705, 1747
BssT1I CCWWGG 2 cut(s) 336, 763
Bst2UI CCWGG 6 cut(s) 318, 347, 523, 864, 918, 1684
Bst4CI ACNGT 6 cut(s) 63, 231, 486, 1261, 1654, 1898
Bst6I CTCTTC 3 cut(s) 272, 788, 831
BstAFI CTTAAG 2 cut(s) 1331, 1471
BstC8I GCNNGC 2 cut(s) 804, 1446
BstDEI CTNAG 6 cut(s) 377, 467, 1109, 1161, 1555, 1848
BstF5I GGATG 3 cut(s) 717, 856, 1411
BstFNI CGCG 1 cut(s) 657
BstH2I RGCGCY 2 cut(s) 585, 1015
BstHHI GCGC 2 cut(s) 584, 1014
BstKTI GATC 6 cut(s) 261, 345, 751, 1267, 1708, 1750
BstMAI GTCTC 6 cut(s) 425, 516, 599, 1027, 1279, 1491
BstMBI GATC 6 cut(s) 258, 342, 748, 1264, 1705, 1747
BstMWI GCNNNNNNNGC 4 cut(s) 456, 1372, 1454, 1489
BstNI CCWGG 6 cut(s) 318, 347, 523, 864, 918, 1684
BstNSI RCATGY 2 cut(s) 1616, 1865
BstPAI GACNNNNGTC 1 cut(s) 909
BstSCI CCNGG 7 cut(s) 316, 345, 521, 629, 862, 916, 1682
BstSFI CTRYAG 1 cut(s) 1037
BstSLI GKGCMC 1 cut(s) 529
BstUI CGCG 1 cut(s) 657
BstV2I GAAGAC 1 cut(s) 1256
BstX2I RGATCY 1 cut(s) 1747
BstYI RGATCY 1 cut(s) 1747
Bsu36I CCTNAGG 1 cut(s) 1109
BsuRI GGCC 3 cut(s) 252, 574, 922
BtgZI GCGATG 1 cut(s) 672
BtsCI GGATG 3 cut(s) 717, 856, 1411
BtsI GCAGTG 1 cut(s) 540
BtsIMutI CAGTG 5 cut(s) 540, 1158, 1266, 1650, 1762
Cac8I GCNNGC 2 cut(s) 804, 1446
CfoI GCGC 2 cut(s) 584, 1014
Cfr13I GGNCC 3 cut(s) 496, 920, 1167
CseI GACGC 2 cut(s) 663, 1560
CsiI ACCWGGT 2 cut(s) 862, 1682
Csp6I GTAC 8 cut(s) 201, 482, 487, 627, 816, 942, 1226, 1783
CviAII CATG 7 cut(s) 731, 1306, 1376, 1535, 1613, 1843, 1862
CviQI GTAC 8 cut(s) 201, 482, 487, 627, 816, 942, 1226, 1783
DdeI CTNAG 6 cut(s) 377, 467, 1109, 1161, 1555, 1848
DpnI GATC 6 cut(s) 260, 344, 750, 1266, 1707, 1749
DpnII GATC 6 cut(s) 258, 342, 748, 1264, 1705, 1747
DraI TTTAAA 2 cut(s) 150, 1831
Eam1104I CTCTTC 3 cut(s) 272, 788, 831
EarI CTCTTC 3 cut(s) 272, 788, 831
Eco130I CCWWGG 2 cut(s) 336, 763
Eco24I GRGCYC 1 cut(s) 833
Eco31I GGTCTC 1 cut(s) 1491
Eco47I GGWCC 2 cut(s) 496, 1167
Eco47III AGCGCT 1 cut(s) 583
Eco57I CTGAAG 3 cut(s) 51, 686, 855
Eco81I CCTNAGG 1 cut(s) 1109
EcoO109I RGGNCCY 2 cut(s) 496, 920
EcoRII CCWGG 6 cut(s) 316, 345, 521, 862, 916, 1682
EcoT14I CCWWGG 2 cut(s) 336, 763
EcoT22I ATGCAT 1 cut(s) 1459
EcoT38I GRGCYC 1 cut(s) 833
ErhI CCWWGG 2 cut(s) 336, 763
FaeI CATG 7 cut(s) 734, 1309, 1379, 1538, 1616, 1846, 1865
FalI AAGNNNNNCTT 4 cut(s) 24, 56, 530, 562
FaqI GGGAC 1 cut(s) 1685
FatI CATG 7 cut(s) 730, 1305, 1375, 1534, 1612, 1842, 1861
FauI CCCGC 2 cut(s) 538, 1760
FbaI TGATCA 2 cut(s) 748, 1705
FblI GTMKAC 1 cut(s) 1823
Fnu4HI GCNGC 1 cut(s) 95
FokI GGATG 3 cut(s) 724, 863, 1418
FriOI GRGCYC 1 cut(s) 833
Fsp4HI GCNGC 1 cut(s) 95
FspBI CTAG 4 cut(s) 500, 695, 783, 1412
GlaI GCGC 2 cut(s) 583, 1013
GluI GCNGC 1 cut(s) 95
GsuI CTGGAG 3 cut(s) 339, 368, 1470
HaeII RGCGCY 2 cut(s) 585, 1015
HaeIII GGCC 3 cut(s) 252, 574, 922
HapII CCGG 1 cut(s) 631
HgaI GACGC 2 cut(s) 663, 1560
HhaI GCGC 2 cut(s) 584, 1014
Hin1II CATG 7 cut(s) 734, 1309, 1379, 1538, 1616, 1846, 1865
Hin6I GCGC 2 cut(s) 582, 1012
HinP1I GCGC 2 cut(s) 582, 1012
HindIII AAGCTT 1 cut(s) 38
HinfI GANTC 9 cut(s) 53, 290, 312, 503, 1090, 1312, 1505, 1820, 1846
HpaII CCGG 1 cut(s) 631
HphI GGTGA 3 cut(s) 352, 779, 1550
Hpy166II GTNNAC 6 cut(s) 57, 623, 770, 1521, 1762, 1824
Hpy188I TCNGA 7 cut(s) 48, 127, 295, 835, 1065, 1095, 1804
Hpy188III TCNNGA 9 cut(s) 679, 968, 1316, 1389, 1420, 1463, 1487, 1548, 1811
Hpy8I GTNNAC 6 cut(s) 57, 623, 770, 1521, 1762, 1824
Hpy99I CGWCG 1 cut(s) 11
HpyCH4III ACNGT 6 cut(s) 63, 231, 486, 1261, 1654, 1898
HpyCH4IV ACGT 3 cut(s) 625, 1523, 1781
HpyF10VI GCNNNNNNNGC 4 cut(s) 456, 1372, 1454, 1489
HpyF3I CTNAG 6 cut(s) 377, 467, 1109, 1161, 1555, 1848
HpySE526I ACGT 3 cut(s) 625, 1523, 1781
Hsp92II CATG 7 cut(s) 734, 1309, 1379, 1538, 1616, 1846, 1865
HspAI GCGC 2 cut(s) 582, 1012
Ksp22I TGATCA 2 cut(s) 748, 1705
Kzo9I GATC 6 cut(s) 258, 342, 748, 1264, 1705, 1747
LmnI GCTCC 2 cut(s) 349, 1062
LweI GCATC 2 cut(s) 1309, 1396
MabI ACCWGGT 2 cut(s) 862, 1682
MaeI CTAG 4 cut(s) 500, 695, 783, 1412
MaeII ACGT 3 cut(s) 625, 1523, 1781
MaeIII GTNAC 7 cut(s) 131, 215, 433, 882, 1067, 1475, 1777
MalI GATC 6 cut(s) 260, 344, 750, 1266, 1707, 1749
MbiI CCGCTC 1 cut(s) 94
MboI GATC 6 cut(s) 258, 342, 748, 1264, 1705, 1747
MboII GAAGA 6 cut(s) 286, 289, 550, 805, 848, 1261
MflI RGATCY 1 cut(s) 1747
MhlI GDGCHC 3 cut(s) 529, 833, 1861
MlyI GAGTC 3 cut(s) 62, 1829, 1840
Mph1103I ATGCAT 1 cut(s) 1459
MslI CAYNNNNRTG 1 cut(s) 935
MspA1I CMGCKG 1 cut(s) 1767
MspCI CTTAAG 2 cut(s) 1331, 1471
MspI CCGG 1 cut(s) 631
MspR9I CCNGG 7 cut(s) 318, 347, 523, 631, 864, 918, 1684
Mva1269I GAATGC 1 cut(s) 1459
MvaI CCWGG 6 cut(s) 318, 347, 523, 864, 918, 1684
MvnI CGCG 1 cut(s) 657
MwoI GCNNNNNNNGC 4 cut(s) 456, 1372, 1454, 1489
NciI CCSGG 1 cut(s) 631
NdeII GATC 6 cut(s) 258, 342, 748, 1264, 1705, 1747
NlaIII CATG 7 cut(s) 734, 1309, 1379, 1538, 1616, 1846, 1865
NlaIV GGNNCC 2 cut(s) 528, 1840
NmuCI GTSAC 3 cut(s) 131, 215, 1777
NsiI ATGCAT 1 cut(s) 1459
NspI RCATGY 2 cut(s) 1616, 1865
PciI ACATGT 2 cut(s) 1612, 1861
PctI GAATGC 1 cut(s) 1459
PfeI GAWTC 6 cut(s) 290, 312, 503, 1090, 1312, 1505
PfoI TCCNGGA 1 cut(s) 345
PkrI GCNGC 1 cut(s) 96
PleI GAGTC 3 cut(s) 61, 1828, 1840
PpsI GAGTC 3 cut(s) 61, 1828, 1840
PpuMI RGGWCCY 1 cut(s) 496
PscI ACATGT 2 cut(s) 1612, 1861
PshAI GACNNNNGTC 1 cut(s) 909
PshBI ATTAAT 1 cut(s) 1050
Psp5II RGGWCCY 1 cut(s) 496
Psp6I CCWGG 6 cut(s) 316, 345, 521, 862, 916, 1682
PspGI CCWGG 6 cut(s) 316, 345, 521, 862, 916, 1682
PspN4I GGNNCC 2 cut(s) 528, 1840
PspPI GGNCC 3 cut(s) 496, 920, 1167
PspPPI RGGWCCY 1 cut(s) 496
PstI CTGCAG 1 cut(s) 1041
PsuI RGATCY 1 cut(s) 1747
RsaI GTAC 8 cut(s) 202, 483, 488, 628, 817, 943, 1227, 1784
RsaNI GTAC 8 cut(s) 201, 482, 487, 627, 816, 942, 1226, 1783
RseI CAYNNNNRTG 1 cut(s) 935
SatI GCNGC 1 cut(s) 95
Sau3AI GATC 6 cut(s) 258, 342, 748, 1264, 1705, 1747
Sau96I GGNCC 3 cut(s) 496, 920, 1167
SchI GAGTC 3 cut(s) 62, 1829, 1840
ScrFI CCNGG 7 cut(s) 318, 347, 523, 631, 864, 918, 1684
SduI GDGCHC 3 cut(s) 529, 833, 1861
SexAI ACCWGGT 2 cut(s) 862, 1682
SfaNI GCATC 2 cut(s) 1309, 1396
SfcI CTRYAG 1 cut(s) 1037
SinI GGWCC 2 cut(s) 496, 1167
SmiMI CAYNNNNRTG 1 cut(s) 935
SmlI CTYRAG 4 cut(s) 386, 1331, 1471, 1546
SmoI CTYRAG 4 cut(s) 386, 1331, 1471, 1546
SsiI CCGC 3 cut(s) 94, 531, 1767
SspI AATATT 1 cut(s) 244
SspMI CTAG 4 cut(s) 500, 695, 783, 1412
StyD4I CCNGG 7 cut(s) 316, 345, 521, 629, 862, 916, 1682
StyI CCWWGG 2 cut(s) 336, 763
TaaI ACNGT 6 cut(s) 63, 231, 486, 1261, 1654, 1898
TaiI ACGT 3 cut(s) 628, 1526, 1784
TaqI TCGA 1 cut(s) 1115
TaqII GACCGA 1 cut(s) 20
TatI WGTACW 1 cut(s) 815
TauI GCSGC 1 cut(s) 97
TfiI GAWTC 6 cut(s) 290, 312, 503, 1090, 1312, 1505
TscAI CASTG 5 cut(s) 540, 1165, 1266, 1657, 1762
TseFI GTSAC 3 cut(s) 131, 215, 1777
Tsp45I GTSAC 3 cut(s) 131, 215, 1777
TspGWI ACGGA 1 cut(s) 1049
TspRI CASTG 5 cut(s) 540, 1165, 1266, 1657, 1762
Vha464I CTTAAG 2 cut(s) 1331, 1471
VpaK11BI GGWCC 2 cut(s) 496, 1167
VspI ATTAAT 1 cut(s) 1050
XapI RAATTY 2 cut(s) 674, 688
XceI RCATGY 2 cut(s) 1616, 1865
XcmI CCANNNNNNNNNTGG 1 cut(s) 343
XmiI GTMKAC 1 cut(s) 1823
XspI CTAG 4 cut(s) 500, 695, 783, 1412
Zsp2I ATGCAT 1 cut(s) 1459
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.