Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000441

Physical Location & Seq

Genomic Coordinates Reverse (-)

70049555 .. 70065173

Gene Structure 15619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG501100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGGAGGTCGCCACCTTCCGAATACCGTCTTTCAAGGAAGTCACCTACTTCATCTCGAGTCTCAAGTCGTCGGATCGAATAAGGCGCTCCAGGAGTGCAACAAGAAGCTCGTTGCCTCCGAACTCCGCGACGGGGCCATGTGGGGTGTCAAATTGTTCGCCTGAGTCTGAGCCCGGGATTTCCGGCAAGGAATGTCCTAAACAAGATCCTTCCAGTGTGGACAACGGGATTGCTGTGACGTACATTATCAAGCGATTATCGGAAGGTCTTGAATTAGAGTCTACCTTTAAAAAAGGTGCCATGACTCAGCAGAGAGCACATGTTTTGGGAAGGTTCTTAAGTGACAACAATGACGCAGAGAGATTCAGTCATCTGCTCTCCATTGTCTCTACTTCAGTCATCTCCAACGCTCAGACGAAAGAACGCCTCAAGCTCAAAGAAATCTTTGAACACGCCGAGGAACGCTGCCGTACTGGCCCTTGCATGGAAGGCGTTTCTTTCAATCTCGACTCTTTCTATTCTGCTCTTGAAAAGTACGACTTCAATTCCGAGATTGGAACCAAGTTTATGTTTAGTCTGGAGTTTGTATATATTGAAGTTAGTACAGCGAATCTTGGTATTATTGCTGGTGTGGCTGCTCTAATTTTGGGATCCAAGAAGTTACCTGAATTGGGCAAGAGTGATTATGATAACAAGAAAGTAGTTAGGTTATTGGACGAGGAGAAGTTCAAGGAAACAGTTCATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0009719 GO:0009725 GO:0009735 GO:0010033 GO:0016020 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050896 GO:0097159 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Protein Analysis

249

Amino Acids

27.65

Weight (kDa)

7.61

Isoelectric Point (pI)

41.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000441)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica	MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis	pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis	RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata	RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora	Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii	Rroxscaffold_7G00210800
rosa_rugosa	Rorug05G0253300
rosa_samantha	Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana	Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	296
AccI	GTMKAC	1 cut(s)	281
AccII	CGCG	1 cut(s)	128
AciI	CCGC	1 cut(s)	126
AclWI	GGATC	4 cut(s)	81, 200, 645, 658
AcuI	CTGAAG	1 cut(s)	378
AfaI	GTAC	4 cut(s)	242, 472, 536, 604
AfiI	CCNNNNNNNGG	3 cut(s)	132, 484, 671
AflII	CTTAAG	1 cut(s)	337
AflIII	ACRYGT	1 cut(s)	319
AgsI	TTSAA	8 cut(s)	34, 272, 449, 502, 530, 544, 596, 730
AjnI	CCWGG	1 cut(s)	89
AluBI	AGCT	2 cut(s)	108, 433
AluI	AGCT	2 cut(s)	108, 433
Alw21I	GWGCWC	1 cut(s)	319
Alw26I	GTCTC	2 cut(s)	65, 391
AlwI	GGATC	4 cut(s)	81, 200, 645, 658
Ama87I	CYCGRG	2 cut(s)	55, 173
AoxI	GGCC	2 cut(s)	134, 475
ApeKI	GCWGC	2 cut(s)	465, 635
Asp700I	GAANNNNTTC	1 cut(s)	738
AspLEI	GCGC	1 cut(s)	87
AspS9I	GGNCC	2 cut(s)	134, 476
AsuC2I	CCSGG	2 cut(s)	174, 175
AsuHPI	GGTGA	1 cut(s)	34
AvaI	CYCGRG	2 cut(s)	55, 173
BamHI	GGATCC	1 cut(s)	650
BanI	GGYRCC	1 cut(s)	296
BanII	GRGCYC	1 cut(s)	174
Bbv12I	GWGCWC	1 cut(s)	319
BbvI	GCAGC	2 cut(s)	452, 622
BceAI	ACGGC	1 cut(s)	453
BciT130I	CCWGG	1 cut(s)	91
BcnI	CCSGG	2 cut(s)	174, 175
BcoDI	GTCTC	2 cut(s)	65, 391
BfoI	RGCGCY	1 cut(s)	88
BfrI	CTTAAG	1 cut(s)	337
BglI	GCCNNNNNGGC	1 cut(s)	474
BisI	GCNGC	2 cut(s)	466, 636
BlsI	GCNGC	2 cut(s)	467, 637
Bme1390I	CCNGG	3 cut(s)	91, 174, 175
BmeT110I	CYCGRG	2 cut(s)	55, 173
BmgT120I	GGNCC	2 cut(s)	134, 476
BmiI	GGNNCC	4 cut(s)	135, 298, 559, 652
BmrFI	CCNGG	3 cut(s)	91, 174, 175
BpmI	CTGGAG	2 cut(s)	73, 599
BpuEI	CTTGAG	2 cut(s)	47, 413
BpuMI	CCSGG	2 cut(s)	174, 175
BsaJI	CCNNGG	2 cut(s)	173, 456
Bsc4I	CCNNNNNNNGG	3 cut(s)	132, 484, 671
Bse1I	ACTGG	2 cut(s)	213, 478
BseBI	CCWGG	1 cut(s)	91
BseDI	CCNNGG	2 cut(s)	173, 456
BseLI	CCNNNNNNNGG	3 cut(s)	132, 484, 671
BseMII	CTCAG	4 cut(s)	153, 159, 320, 425
BseNI	ACTGG	2 cut(s)	213, 478
BseRI	GAGGAG	1 cut(s)	734
BseXI	GCAGC	2 cut(s)	452, 622
Bsh1236I	CGCG	1 cut(s)	128
BshFI	GGCC	2 cut(s)	136, 477
BshNI	GGYRCC	1 cut(s)	296
BsiHKAI	GWGCWC	1 cut(s)	319
BsiHKCI	CYCGRG	2 cut(s)	55, 173
BsiSI	CCGG	2 cut(s)	174, 183
BslI	CCNNNNNNNGG	3 cut(s)	132, 484, 671
BsmAI	GTCTC	2 cut(s)	65, 391
BsnI	GGCC	2 cut(s)	136, 477
BsoBI	CYCGRG	2 cut(s)	55, 173
Bsp1286I	GDGCHC	2 cut(s)	174, 319
Bsp143I	GATC	3 cut(s)	73, 205, 650
BspACI	CCGC	1 cut(s)	126
BspANI	GGCC	2 cut(s)	136, 477
BspCNI	CTCAG	4 cut(s)	154, 160, 319, 424
BspFNI	CGCG	1 cut(s)	128
BspLI	GGNNCC	4 cut(s)	135, 298, 559, 652
BspPI	GGATC	4 cut(s)	81, 200, 645, 658
BspT107I	GGYRCC	1 cut(s)	296
BspTI	CTTAAG	1 cut(s)	337
BsrI	ACTGG	2 cut(s)	213, 478
BssECI	CCNNGG	2 cut(s)	173, 456
BssMI	GATC	3 cut(s)	73, 205, 650
Bst2UI	CCWGG	1 cut(s)	91
Bst4CI	ACNGT	2 cut(s)	27, 739
BstAFI	CTTAAG	1 cut(s)	337
BstDEI	CTNAG	4 cut(s)	162, 168, 306, 411
BstFNI	CGCG	1 cut(s)	128
BstH2I	RGCGCY	1 cut(s)	88
BstHHI	GCGC	1 cut(s)	87
BstKTI	GATC	3 cut(s)	76, 208, 653
BstMAI	GTCTC	2 cut(s)	65, 391
BstMBI	GATC	3 cut(s)	73, 205, 650
BstMWI	GCNNNNNNNGC	3 cut(s)	474, 489, 632
BstNI	CCWGG	1 cut(s)	91
BstNSI	RCATGY	1 cut(s)	323
BstSCI	CCNGG	3 cut(s)	89, 172, 173
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	2 cut(s)	452, 622
BstX2I	RGATCY	2 cut(s)	205, 650
BstYI	RGATCY	2 cut(s)	205, 650
BsuRI	GGCC	2 cut(s)	136, 477
BtsIMutI	CAGTG	1 cut(s)	220
CfoI	GCGC	1 cut(s)	87
Cfr13I	GGNCC	2 cut(s)	134, 476
Cfr9I	CCCGGG	1 cut(s)	173
CseI	GACGC	1 cut(s)	362
Csp6I	GTAC	4 cut(s)	241, 471, 535, 603
CviAII	CATG	4 cut(s)	138, 301, 320, 484
CviJI	RGCY	6 cut(s)	108, 136, 172, 433, 477, 635
CviKI_1	RGCY	6 cut(s)	108, 136, 172, 433, 477, 635
CviQI	GTAC	4 cut(s)	241, 471, 535, 603
DdeI	CTNAG	4 cut(s)	162, 168, 306, 411
DpnI	GATC	3 cut(s)	75, 207, 652
DpnII	GATC	3 cut(s)	73, 205, 650
DraI	TTTAAA	1 cut(s)	289
Eco24I	GRGCYC	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	378
Eco88I	CYCGRG	2 cut(s)	55, 173
EcoRII	CCWGG	1 cut(s)	89
EcoT38I	GRGCYC	1 cut(s)	174
FaeI	CATG	4 cut(s)	141, 304, 323, 487
FaiI	YATR	9 cut(s)	139, 302, 321, 485, 569, 589, 591, 687, 744
FalI	AAGNNNNNCTT	2 cut(s)	524, 556
FatI	CATG	4 cut(s)	137, 300, 319, 483
FblI	GTMKAC	1 cut(s)	281
Fnu4HI	GCNGC	2 cut(s)	466, 636
FriOI	GRGCYC	1 cut(s)	174
Fsp4HI	GCNGC	2 cut(s)	466, 636
GlaI	GCGC	1 cut(s)	86
GluI	GCNGC	2 cut(s)	466, 636
GsuI	CTGGAG	2 cut(s)	73, 599
HaeII	RGCGCY	1 cut(s)	88
HaeIII	GGCC	2 cut(s)	136, 477
HapII	CCGG	2 cut(s)	174, 183
HgaI	GACGC	1 cut(s)	362
HhaI	GCGC	1 cut(s)	87
Hin1II	CATG	4 cut(s)	141, 304, 323, 487
Hin6I	GCGC	1 cut(s)	85
HinP1I	GCGC	1 cut(s)	85
HinfI	GANTC	7 cut(s)	58, 164, 278, 304, 363, 509, 610
HpaII	CCGG	2 cut(s)	174, 183
HphI	GGTGA	1 cut(s)	34
Hpy166II	GTNNAC	2 cut(s)	220, 282
Hpy188I	TCNGA	7 cut(s)	20, 73, 120, 169, 262, 414, 550
Hpy188III	TCNNGA	5 cut(s)	55, 269, 506, 527, 578
Hpy8I	GTNNAC	2 cut(s)	220, 282
Hpy99I	CGWCG	2 cut(s)	73, 133
HpyAV	CCTTC	5 cut(s)	25, 219, 257, 324, 482
HpyCH4III	ACNGT	2 cut(s)	27, 739
HpyCH4IV	ACGT	1 cut(s)	239
HpyCH4V	TGCA	2 cut(s)	98, 483
HpyF10VI	GCNNNNNNNGC	3 cut(s)	474, 489, 632
HpyF3I	CTNAG	4 cut(s)	162, 168, 306, 411
HpySE526I	ACGT	1 cut(s)	239
Hsp92II	CATG	4 cut(s)	141, 304, 323, 487
HspAI	GCGC	1 cut(s)	85
Kzo9I	GATC	3 cut(s)	73, 205, 650
LmnI	GCTCC	1 cut(s)	92
Lsp1109I	GCAGC	2 cut(s)	452, 622
MaeII	ACGT	1 cut(s)	239
MaeIII	GTNAC	4 cut(s)	40, 235, 341, 660
MalI	GATC	3 cut(s)	75, 207, 652
MboI	GATC	3 cut(s)	73, 205, 650
MflI	RGATCY	2 cut(s)	205, 650
MhlI	GDGCHC	2 cut(s)	174, 319
MluCI	AATT	5 cut(s)	151, 272, 544, 642, 668
MlyI	GAGTC	5 cut(s)	67, 173, 287, 298, 503
MmeI	TCCRAC	2 cut(s)	51, 429
MnlI	CCTC	4 cut(s)	126, 437, 451, 712
MroXI	GAANNNNTTC	1 cut(s)	738
MseI	TTAA	2 cut(s)	288, 338
MspCI	CTTAAG	1 cut(s)	337
MspI	CCGG	2 cut(s)	174, 183
MspR9I	CCNGG	3 cut(s)	91, 174, 175
MvaI	CCWGG	1 cut(s)	91
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	3 cut(s)	474, 489, 632
NciI	CCSGG	2 cut(s)	174, 175
NdeII	GATC	3 cut(s)	73, 205, 650
NlaIII	CATG	4 cut(s)	141, 304, 323, 487
NlaIV	GGNNCC	4 cut(s)	135, 298, 559, 652
NmeAIII	GCCGAG	1 cut(s)	481
NmuCI	GTSAC	3 cut(s)	40, 235, 341
NspI	RCATGY	1 cut(s)	323
PaeR7I	CTCGAG	1 cut(s)	55
PciI	ACATGT	1 cut(s)	319
PcsI	WCGNNNNNNNCGW	1 cut(s)	116
PdmI	GAANNNNTTC	1 cut(s)	738
PfeI	GAWTC	2 cut(s)	363, 610
PfoI	TCCNGGA	1 cut(s)	89
PkrI	GCNGC	2 cut(s)	467, 637
PleI	GAGTC	5 cut(s)	66, 172, 286, 298, 503
PpsI	GAGTC	5 cut(s)	66, 172, 286, 298, 503
PscI	ACATGT	1 cut(s)	319
Psp6I	CCWGG	1 cut(s)	89
PspGI	CCWGG	1 cut(s)	89
PspN4I	GGNNCC	4 cut(s)	135, 298, 559, 652
PspPI	GGNCC	2 cut(s)	134, 476
PsuI	RGATCY	2 cut(s)	205, 650
RsaI	GTAC	4 cut(s)	242, 472, 536, 604
RsaNI	GTAC	4 cut(s)	241, 471, 535, 603
SaqAI	TTAA	2 cut(s)	288, 338
SatI	GCNGC	2 cut(s)	466, 636
Sau3AI	GATC	3 cut(s)	73, 205, 650
Sau96I	GGNCC	2 cut(s)	134, 476
SchI	GAGTC	5 cut(s)	67, 173, 287, 298, 503
ScrFI	CCNGG	3 cut(s)	91, 174, 175
SduI	GDGCHC	2 cut(s)	174, 319
Sfr274I	CTCGAG	1 cut(s)	55
SlaI	CTCGAG	1 cut(s)	55
SmaI	CCCGGG	1 cut(s)	175
SmlI	CTYRAG	4 cut(s)	55, 62, 337, 428
SmoI	CTYRAG	4 cut(s)	55, 62, 337, 428
Sse9I	AATT	5 cut(s)	151, 272, 544, 642, 668
SsiI	CCGC	1 cut(s)	126
StyD4I	CCNGG	3 cut(s)	89, 172, 173
TaaI	ACNGT	2 cut(s)	27, 739
TaiI	ACGT	1 cut(s)	242
TaqI	TCGA	3 cut(s)	56, 76, 507
TasI	AATT	5 cut(s)	151, 272, 544, 642, 668
TatI	WGTACW	1 cut(s)	602
TfiI	GAWTC	2 cut(s)	363, 610
Tru1I	TTAA	2 cut(s)	288, 338
Tru9I	TTAA	2 cut(s)	288, 338
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	3 cut(s)	40, 235, 341
TseI	GCWGC	2 cut(s)	465, 635
Tsp45I	GTSAC	3 cut(s)	40, 235, 341
TspDTI	ATGAA	2 cut(s)	40, 731
TspMI	CCCGGG	1 cut(s)	173
TspRI	CASTG	1 cut(s)	220
Vha464I	CTTAAG	1 cut(s)	337
XceI	RCATGY	1 cut(s)	323
XhoI	CTCGAG	1 cut(s)	55
XmaI	CCCGGG	1 cut(s)	173
XmiI	GTMKAC	1 cut(s)	281
XmnI	GAANNNNTTC	1 cut(s)	738

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.