Rmu_sc0001473.1_g000034

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001473.1
OG0000441
Physical Location & Seq
Reverse (-)
137063 .. 147732
10670 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001473.1_g000034.1.cds

Sequence Viewer

Length: 1317 bp
atgactgacgagttaagggcagatattactaaagtgaagcttgatatgatagagtccacactgttcaggaatttgtttagagctttttatgagcagaaaataatagactctgcttgtaggaagtctgatattgacatcgtttctcttttaaaatgctttgacaaggaaaaaaactcttttcagtttgggaaaattactggtaccatatctgtaggtgacattgcagaactgtttggtttgaatattgaaggccgtgagatcaatcttaaccagaagaagagaaaaagggattctgatttcattaaaagacgatttcctggagtgaaaaggttgtccaaggtgatcctgcaacaacaaatcaaagatgtagctaaactgaggcgcttgagaatgaaggtgattttgttaggttggtcgcccctgtggcatggagggaagactggagtatttgttaaggatgtactagcaatcttgaatgaggaagctgtcggtgtgcaggctatggatgcatatcttgaaatattaggtcacaagcatctagagcagggtgaccctgtatctttgtttgtgtccacttttgattggtatgtggatgatatgaaaggcggagaaccaaaagcaagagttgaagcttactatgaacctttgttcaataatgtctgcaatatggacttcgtttttctcccaattatacataagaaacagcaacaattcaccttgttagtcctaaacaaagaacttcaatgttgggaacactacaatactcaaagaccaaagcaaactacattagtggaccctgctttgaagatgcatccagattgcaaggaaattttggcggtggttgtagtcgttgacaagaagaatggtctaatggataattctacttggttcttcaagcttgacgagcctgaaatttacatggttggtcaaggatcggctcaggtgccaagggaaaatggattttttcctaaaaggtcaaggattggctcacttgtgagatggtatatgtcagaaattgctggagctgaaaccaagaatgcctcgtggaattttttgtataaattcagggcgctccggcgtcgttttccagaccaagggggacgagacttcgatctcgggttgcgttgtggtcgagcccggttttggttctttcgggctgcgttgtggtcgacggccgtggtcggcatcaggctcttgggggaggctcttcttgcatcatcggtttccagtcggagtgaatcgacgtcgggactagaagaggagatcgatcatggtttcgggactagaggaggagcgagatcggagctttcctgctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

438

Amino Acids

50.19

Weight (kDa)

9.19

Isoelectric Point (pI)

55.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 1247
Acc65I GGTACC 1 cut(s) 200
AccB1I GGYRCC 2 cut(s) 200, 943
AccI GTMKAC 1 cut(s) 1169
AciI CCGC 2 cut(s) 606, 836
AclWI GGATC 2 cut(s) 337, 940
AcoI YGGCCR 1 cut(s) 1173
AcsI RAATTY 5 cut(s) 70, 828, 912, 1048, 1061
AcyI GRCGYC 2 cut(s) 1078, 1244
AfaI GTAC 2 cut(s) 202, 462
AfiI CCNNNNNNNGG 2 cut(s) 1094, 1143
AgsI TTSAA 9 cut(s) 241, 248, 475, 518, 629, 652, 743, 805, 895
AjnI CCWGG 1 cut(s) 316
AluBI AGCT 8 cut(s) 40, 83, 371, 485, 632, 898, 1025, 1306
AluI AGCT 8 cut(s) 40, 83, 371, 485, 632, 898, 1025, 1306
Alw26I GTCTC 1 cut(s) 1098
AlwI GGATC 2 cut(s) 337, 940
Ama87I CYCGRG 1 cut(s) 1115
AoxI GGCC 2 cut(s) 250, 1173
ApeKI GCWGC 1 cut(s) 1157
ApoI RAATTY 5 cut(s) 70, 828, 912, 1048, 1061
Asp718I GGTACC 1 cut(s) 200
AspLEI GCGC 2 cut(s) 384, 1072
AspS9I GGNCC 1 cut(s) 793
AsuC2I CCSGG 1 cut(s) 1138
AsuHPI GGTGA 5 cut(s) 227, 352, 409, 560, 706
AvaI CYCGRG 1 cut(s) 1115
AvaII GGWCC 1 cut(s) 793
BanI GGYRCC 2 cut(s) 200, 943
BanII GRGCYC 1 cut(s) 1138
BauI CACGAG 1 cut(s) 1042
BbsI GAAGAC 1 cut(s) 443
BbvI GCAGC 1 cut(s) 1144
BccI CCATC 1 cut(s) 993
BceAI ACGGC 3 cut(s) 237, 1160, 1188
BciT130I CCWGG 1 cut(s) 318
BcnI CCSGG 1 cut(s) 1138
BcoDI GTCTC 1 cut(s) 1098
BfaI CTAG 5 cut(s) 464, 539, 1253, 1284, 1315
BfmI CTRYAG 1 cut(s) 210
BfoI RGCGCY 2 cut(s) 385, 1073
BglI GCCNNNNNGGC 1 cut(s) 424
BisI GCNGC 1 cut(s) 1158
BlsI GCNGC 1 cut(s) 1159
Bme1390I CCNGG 2 cut(s) 318, 1138
Bme18I GGWCC 1 cut(s) 793
BmeT110I CYCGRG 1 cut(s) 1115
BmgT120I GGNCC 1 cut(s) 793
BmiI GGNNCC 3 cut(s) 202, 795, 945
BmrFI CCNGG 2 cut(s) 318, 1138
BmsI GCATC 6 cut(s) 496, 544, 798, 820, 1194, 1223
BpiI GAAGAC 1 cut(s) 443
BpmI CTGGAG 3 cut(s) 339, 462, 1041
Bpu10I CCTNAGC 1 cut(s) 939
BpuEI CTTGAG 1 cut(s) 406
BpuMI CCSGG 1 cut(s) 1138
Bsa29I ATCGAT 1 cut(s) 1266
BsaBI GATNNNNATC 1 cut(s) 510
BsaHI GRCGYC 2 cut(s) 1078, 1244
BsaJI CCNNGG 4 cut(s) 336, 947, 1093, 1176
BsaXI ACNNNNNCTCC 2 cut(s) 435, 465
Bsc4I CCNNNNNNNGG 2 cut(s) 1094, 1143
Bse1I ACTGG 3 cut(s) 202, 445, 1227
Bse3DI GCAATG 1 cut(s) 219
Bse8I GATNNNNATC 1 cut(s) 510
BseBI CCWGG 1 cut(s) 318
BseCI ATCGAT 1 cut(s) 1266
BseDI CCNNGG 4 cut(s) 336, 947, 1093, 1176
BseGI GGATG 4 cut(s) 463, 511, 598, 811
BseJI GATNNNNATC 1 cut(s) 510
BseLI CCNNNNNNNGG 2 cut(s) 1094, 1143
BseMI GCAATG 1 cut(s) 219
BseMII CTCAG 2 cut(s) 368, 953
BseNI ACTGG 3 cut(s) 202, 445, 1227
BseRI GAGGAG 3 cut(s) 1274, 1302, 1305
BseX3I CGGCCG 1 cut(s) 1173
BseXI GCAGC 1 cut(s) 1144
BsgI GTGCAG 1 cut(s) 515
Bsh1285I CGRYCG 1 cut(s) 1176
BshFI GGCC 2 cut(s) 252, 1175
BshNI GGYRCC 2 cut(s) 200, 943
BshVI ATCGAT 1 cut(s) 1266
BsiEI CGRYCG 1 cut(s) 1176
BsiHKCI CYCGRG 1 cut(s) 1115
BsiSI CCGG 2 cut(s) 1075, 1138
BslFI GGGAC 3 cut(s) 1113, 1263, 1294
BslI CCNNNNNNNGG 2 cut(s) 1094, 1143
BsmAI GTCTC 1 cut(s) 1098
BsmFI GGGAC 3 cut(s) 1113, 1263, 1294
BsmI GAATGC 1 cut(s) 1042
BsnI GGCC 2 cut(s) 252, 1175
BsoBI CYCGRG 1 cut(s) 1115
Bsp1286I GDGCHC 1 cut(s) 1138
Bsp143I GATC 7 cut(s) 258, 342, 932, 1111, 1263, 1267, 1298
BspACI CCGC 2 cut(s) 606, 836
BspANI GGCC 2 cut(s) 252, 1175
BspCNI CTCAG 2 cut(s) 369, 952
BspDI ATCGAT 1 cut(s) 1266
BspLI GGNNCC 3 cut(s) 202, 795, 945
BspPI GGATC 2 cut(s) 337, 940
BspQI GCTCTTC 1 cut(s) 1212
BspT107I GGYRCC 2 cut(s) 200, 943
BsrDI GCAATG 1 cut(s) 219
BsrI ACTGG 3 cut(s) 202, 445, 1227
BssECI CCNNGG 4 cut(s) 336, 947, 1093, 1176
BssMI GATC 7 cut(s) 258, 342, 932, 1111, 1263, 1267, 1298
BssNI GRCGYC 2 cut(s) 1078, 1244
BssSI CACGAG 1 cut(s) 1042
BssT1I CCWWGG 3 cut(s) 336, 947, 1093
Bst2BI CACGAG 1 cut(s) 1042
Bst2UI CCWGG 1 cut(s) 318
Bst4CI ACNGT 2 cut(s) 63, 231
Bst6I CTCTTC 3 cut(s) 272, 1212, 1251
BstACI GRCGYC 2 cut(s) 1078, 1244
BstC8I GCNNGC 1 cut(s) 498
BstDEI CTNAG 2 cut(s) 377, 939
BstDSI CCRYGG 1 cut(s) 1176
BstEII GGTNACC 1 cut(s) 548
BstF5I GGATG 4 cut(s) 463, 511, 598, 811
BstH2I RGCGCY 2 cut(s) 385, 1073
BstHHI GCGC 2 cut(s) 384, 1072
BstKTI GATC 7 cut(s) 261, 345, 935, 1114, 1266, 1270, 1301
BstMAI GTCTC 1 cut(s) 1098
BstMBI GATC 7 cut(s) 258, 342, 932, 1111, 1263, 1267, 1298
BstMCI CGRYCG 1 cut(s) 1176
BstMWI GCNNNNNNNGC 5 cut(s) 424, 506, 541, 904, 1211
BstNI CCWGG 1 cut(s) 318
BstPI GGTNACC 1 cut(s) 548
BstSCI CCNGG 2 cut(s) 316, 1136
BstSFI CTRYAG 1 cut(s) 210
BstV1I GCAGC 1 cut(s) 1144
BstV2I GAAGAC 1 cut(s) 443
BstZI CGGCCG 1 cut(s) 1173
Bsu15I ATCGAT 1 cut(s) 1266
BsuRI GGCC 2 cut(s) 252, 1175
BsuTUI ATCGAT 1 cut(s) 1266
BtgI CCRYGG 1 cut(s) 1176
BtsCI GGATG 4 cut(s) 463, 511, 598, 811
BtsIMutI CAGTG 1 cut(s) 59
Cac8I GCNNGC 1 cut(s) 498
CfoI GCGC 2 cut(s) 384, 1072
Cfr13I GGNCC 1 cut(s) 793
ClaI ATCGAT 1 cut(s) 1266
CseI GACGC 1 cut(s) 1067
Csp6I GTAC 2 cut(s) 201, 461
CviAII CATG 3 cut(s) 428, 919, 1271
CviQI GTAC 2 cut(s) 201, 461
DdeI CTNAG 2 cut(s) 377, 939
DpnI GATC 7 cut(s) 260, 344, 934, 1113, 1265, 1269, 1300
DpnII GATC 7 cut(s) 258, 342, 932, 1111, 1263, 1267, 1298
DraI TTTAAA 1 cut(s) 150
EaeI YGGCCR 1 cut(s) 1173
EagI CGGCCG 1 cut(s) 1173
Eam1104I CTCTTC 3 cut(s) 272, 1212, 1251
EarI CTCTTC 3 cut(s) 272, 1212, 1251
EciI GGCGGA 1 cut(s) 621
EclXI CGGCCG 1 cut(s) 1173
Eco130I CCWWGG 3 cut(s) 336, 947, 1093
Eco24I GRGCYC 1 cut(s) 1138
Eco47I GGWCC 1 cut(s) 793
Eco52I CGGCCG 1 cut(s) 1173
Eco88I CYCGRG 1 cut(s) 1115
Eco91I GGTNACC 1 cut(s) 548
EcoO65I GGTNACC 1 cut(s) 548
EcoRII CCWGG 1 cut(s) 316
EcoT14I CCWWGG 3 cut(s) 336, 947, 1093
EcoT22I ATGCAT 2 cut(s) 511, 813
EcoT38I GRGCYC 1 cut(s) 1138
ErhI CCWWGG 3 cut(s) 336, 947, 1093
FaeI CATG 3 cut(s) 431, 922, 1274
FalI AAGNNNNNCTT 2 cut(s) 24, 56
FaqI GGGAC 3 cut(s) 1113, 1263, 1294
FatI CATG 3 cut(s) 427, 918, 1270
FblI GTMKAC 1 cut(s) 1169
Fnu4HI GCNGC 1 cut(s) 1158
FokI GGATG 4 cut(s) 470, 518, 605, 798
FriOI GRGCYC 1 cut(s) 1138
Fsp4HI GCNGC 1 cut(s) 1158
FspBI CTAG 5 cut(s) 464, 539, 1253, 1284, 1315
GlaI GCGC 2 cut(s) 383, 1071
GluI GCNGC 1 cut(s) 1158
GsuI CTGGAG 3 cut(s) 339, 462, 1041
HaeII RGCGCY 2 cut(s) 385, 1073
HaeIII GGCC 2 cut(s) 252, 1175
HapII CCGG 2 cut(s) 1075, 1138
HgaI GACGC 1 cut(s) 1067
HhaI GCGC 2 cut(s) 384, 1072
Hin1I GRCGYC 2 cut(s) 1078, 1244
Hin1II CATG 3 cut(s) 431, 922, 1274
Hin6I GCGC 2 cut(s) 382, 1070
HinP1I GCGC 2 cut(s) 382, 1070
HincII GTYRAC 2 cut(s) 853, 1170
HindII GTYRAC 2 cut(s) 853, 1170
HindIII AAGCTT 3 cut(s) 38, 630, 896
HinfI GANTC 4 cut(s) 53, 107, 290, 1238
HpaII CCGG 2 cut(s) 1075, 1138
HphI GGTGA 5 cut(s) 227, 352, 409, 560, 706
Hpy166II GTNNAC 5 cut(s) 57, 573, 793, 853, 1170
Hpy188I TCNGA 5 cut(s) 127, 295, 1012, 1233, 1303
Hpy188III TCNNGA 8 cut(s) 67, 472, 515, 539, 815, 1088, 1248, 1279
Hpy8I GTNNAC 5 cut(s) 57, 573, 793, 853, 1170
Hpy99I CGWCG 4 cut(s) 1083, 1174, 1246, 1249
HpyAV CCTTC 2 cut(s) 242, 388
HpyCH4III ACNGT 2 cut(s) 63, 231
HpyCH4IV ACGT 1 cut(s) 1244
HpyCH4V TGCA 8 cut(s) 224, 349, 496, 509, 663, 811, 822, 1214
HpyF10VI GCNNNNNNNGC 5 cut(s) 424, 506, 541, 904, 1211
HpyF3I CTNAG 2 cut(s) 377, 939
HpySE526I ACGT 1 cut(s) 1244
Hsp92I GRCGYC 2 cut(s) 1078, 1244
Hsp92II CATG 3 cut(s) 431, 922, 1274
HspAI GCGC 2 cut(s) 382, 1070
KpnI GGTACC 1 cut(s) 204
Kzo9I GATC 7 cut(s) 258, 342, 932, 1111, 1263, 1267, 1298
LguI GCTCTTC 1 cut(s) 1212
LmnI GCTCC 4 cut(s) 1022, 1077, 1292, 1303
Lsp1109I GCAGC 1 cut(s) 1144
LweI GCATC 6 cut(s) 496, 544, 798, 820, 1194, 1223
MaeI CTAG 5 cut(s) 464, 539, 1253, 1284, 1315
MaeII ACGT 1 cut(s) 1244
MaeIII GTNAC 3 cut(s) 215, 527, 548
MalI GATC 7 cut(s) 260, 344, 934, 1113, 1265, 1269, 1300
MboI GATC 7 cut(s) 258, 342, 932, 1111, 1263, 1267, 1298
MboII GAAGA 8 cut(s) 286, 289, 448, 817, 871, 883, 1199, 1268
MhlI GDGCHC 1 cut(s) 1138
MlyI GAGTC 2 cut(s) 62, 101
MmeI TCCRAC 1 cut(s) 1211
MnlI CCTC 8 cut(s) 372, 425, 472, 1051, 1195, 1252, 1280, 1283
Mph1103I ATGCAT 2 cut(s) 511, 813
MseI TTAA 5 cut(s) 14, 149, 267, 303, 453
MspI CCGG 2 cut(s) 1075, 1138
MspR9I CCNGG 2 cut(s) 318, 1138
Mva1269I GAATGC 1 cut(s) 1042
MvaI CCWGG 1 cut(s) 318
MwoI GCNNNNNNNGC 5 cut(s) 424, 506, 541, 904, 1211
NciI CCSGG 1 cut(s) 1138
NdeII GATC 7 cut(s) 258, 342, 932, 1111, 1263, 1267, 1298
NlaIII CATG 3 cut(s) 431, 922, 1274
NlaIV GGNNCC 3 cut(s) 202, 795, 945
NmuCI GTSAC 3 cut(s) 215, 527, 548
NsiI ATGCAT 2 cut(s) 511, 813
PciSI GCTCTTC 1 cut(s) 1212
PctI GAATGC 1 cut(s) 1042
PfeI GAWTC 2 cut(s) 290, 1238
PfoI TCCNGGA 1 cut(s) 316
PkrI GCNGC 1 cut(s) 1159
PleI GAGTC 2 cut(s) 61, 101
PpsI GAGTC 2 cut(s) 61, 101
Psp6I CCWGG 1 cut(s) 316
PspEI GGTNACC 1 cut(s) 548
PspGI CCWGG 1 cut(s) 316
PspN4I GGNNCC 3 cut(s) 202, 795, 945
PspPI GGNCC 1 cut(s) 793
RsaI GTAC 2 cut(s) 202, 462
RsaNI GTAC 2 cut(s) 201, 461
SalI GTCGAC 1 cut(s) 1168
SapI GCTCTTC 1 cut(s) 1212
SaqAI TTAA 5 cut(s) 14, 149, 267, 303, 453
SatI GCNGC 1 cut(s) 1158
Sau3AI GATC 7 cut(s) 258, 342, 932, 1111, 1263, 1267, 1298
Sau96I GGNCC 1 cut(s) 793
SchI GAGTC 2 cut(s) 62, 101
ScrFI CCNGG 2 cut(s) 318, 1138
SduI GDGCHC 1 cut(s) 1138
SfaNI GCATC 6 cut(s) 496, 544, 798, 820, 1194, 1223
SfcI CTRYAG 1 cut(s) 210
SinI GGWCC 1 cut(s) 793
SmlI CTYRAG 1 cut(s) 385
SmoI CTYRAG 1 cut(s) 385
SsiI CCGC 2 cut(s) 606, 836
SspI AATATT 2 cut(s) 244, 522
SspMI CTAG 5 cut(s) 464, 539, 1253, 1284, 1315
StyD4I CCNGG 2 cut(s) 316, 1136
StyI CCWWGG 3 cut(s) 336, 947, 1093
TaaI ACNGT 2 cut(s) 63, 231
TaiI ACGT 1 cut(s) 1247
TaqI TCGA 5 cut(s) 1110, 1132, 1169, 1241, 1266
TatI WGTACW 1 cut(s) 460
TfiI GAWTC 2 cut(s) 290, 1238
Tru1I TTAA 5 cut(s) 14, 149, 267, 303, 453
Tru9I TTAA 5 cut(s) 14, 149, 267, 303, 453
TscAI CASTG 1 cut(s) 66
TseFI GTSAC 3 cut(s) 215, 527, 548
TseI GCWGC 1 cut(s) 1157
Tsp45I GTSAC 3 cut(s) 215, 527, 548
TspDTI ATGAA 4 cut(s) 289, 407, 614, 654
TspRI CASTG 1 cut(s) 66
VpaK11BI GGWCC 1 cut(s) 793
XapI RAATTY 5 cut(s) 70, 828, 912, 1048, 1061
XbaI TCTAGA 1 cut(s) 538
XmiI GTMKAC 1 cut(s) 1169
XspI CTAG 5 cut(s) 464, 539, 1253, 1284, 1315
ZraI GACGTC 1 cut(s) 1245
Zsp2I ATGCAT 2 cut(s) 511, 813
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.