Rh7BG428100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000441
Physical Location & Seq
Reverse (-)
48869762 .. 48872533
2772 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG428100.1

Sequence Viewer

Length: 357 bp
ATGACGATTCCTGATGCAAAGAGGCTTAAGGTTTATTTGGCGAAAAGAGAGAACAAGTCAGTGGTACAATTATGGATAAAAATGGGATACCCTTTTTATGAGTTCCTATTCAAGTTGGTGTCTCCGTATCACATAGGGTCGCCCCTGTGGCATGGAGTGAAGTCAGGAGTATTTGTTAAGGATGTACTAGCCATCTTGAATGAGGAAGCTGTCGGTGTGCAGAGCATTGGAAGAAATCCAACAGCCATGAAAAGCGTTCTTGCTCAGGACCGTCTTTGCAGATATGCAATTCACTCCATTCAGATGCAGGACCATCTTCAGATCACTCCAAGACCCCCTTTCCAGAAAAGCATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

118

Amino Acids

13.52

Weight (kDa)

9.83

Isoelectric Point (pI)

54.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 302
AfaI GTAC 2 cut(s) 66, 186
AflII CTTAAG 1 cut(s) 26
AgsI TTSAA 2 cut(s) 112, 199
AluBI AGCT 1 cut(s) 209
AluI AGCT 1 cut(s) 209
Alw26I GTCTC 1 cut(s) 126
AspS9I GGNCC 2 cut(s) 268, 310
AvaII GGWCC 2 cut(s) 268, 310
BccI CCATC 2 cut(s) 200, 321
BciVI GTATCC 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 126
BfaI CTAG 1 cut(s) 188
BfrI CTTAAG 1 cut(s) 26
BfuI GTATCC 1 cut(s) 80
BglI GCCNNNNNGGC 1 cut(s) 148
Bme18I GGWCC 2 cut(s) 268, 310
BmgT120I GGNCC 2 cut(s) 268, 310
BmsI GCATC 2 cut(s) 4, 294
Bpu10I CCTNAGC 1 cut(s) 264
BsaXI ACNNNNNCTCC 2 cut(s) 159, 189
BseGI GGATG 1 cut(s) 187
BseMII CTCAG 1 cut(s) 278
BsgI GTGCAG 1 cut(s) 239
BsmAI GTCTC 1 cut(s) 126
Bsp143I GATC 1 cut(s) 321
BspCNI CTCAG 1 cut(s) 277
BspTI CTTAAG 1 cut(s) 26
BssMI GATC 1 cut(s) 321
Bst4CI ACNGT 1 cut(s) 272
BstAFI CTTAAG 1 cut(s) 26
BstDEI CTNAG 1 cut(s) 264
BstF5I GGATG 1 cut(s) 187
BstKTI GATC 1 cut(s) 324
BstMAI GTCTC 1 cut(s) 126
BstMBI GATC 1 cut(s) 321
BstMWI GCNNNNNNNGC 1 cut(s) 148
BsuI GTATCC 1 cut(s) 80
BtsCI GGATG 1 cut(s) 187
BtsIMutI CAGTG 1 cut(s) 66
Cfr13I GGNCC 2 cut(s) 268, 310
Csp6I GTAC 2 cut(s) 65, 185
CviAII CATG 2 cut(s) 152, 247
CviJI RGCY 4 cut(s) 25, 191, 209, 245
CviKI_1 RGCY 4 cut(s) 25, 191, 209, 245
CviQI GTAC 2 cut(s) 65, 185
DdeI CTNAG 1 cut(s) 264
DpnI GATC 1 cut(s) 323
DpnII GATC 1 cut(s) 321
Eco47I GGWCC 2 cut(s) 268, 310
Eco57I CTGAAG 1 cut(s) 302
FaeI CATG 2 cut(s) 155, 250
FaiI YATR 6 cut(s) 73, 99, 134, 153, 248, 285
FalI AAGNNNNNCTT 2 cut(s) 322, 354
FatI CATG 2 cut(s) 151, 246
FokI GGATG 1 cut(s) 194
FspBI CTAG 1 cut(s) 188
Hin1II CATG 2 cut(s) 155, 250
HinfI GANTC 1 cut(s) 7
Hpy188I TCNGA 2 cut(s) 303, 321
Hpy188III TCNNGA 5 cut(s) 11, 165, 196, 266, 343
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4V TGCA 5 cut(s) 17, 220, 279, 287, 307
HpyF10VI GCNNNNNNNGC 1 cut(s) 148
HpyF3I CTNAG 1 cut(s) 264
Hsp92II CATG 2 cut(s) 155, 250
Kzo9I GATC 1 cut(s) 321
LpnPI CCDG 5 cut(s) 24, 150, 158, 251, 293
LweI GCATC 2 cut(s) 4, 294
MaeI CTAG 1 cut(s) 188
MalI GATC 1 cut(s) 323
MboI GATC 1 cut(s) 321
MboII GAAGA 2 cut(s) 243, 308
MluCI AATT 2 cut(s) 68, 288
MmeI TCCRAC 1 cut(s) 263
MnlI CCTC 2 cut(s) 15, 196
MseI TTAA 2 cut(s) 27, 177
MslI CAYNNNNRTG 1 cut(s) 302
MspCI CTTAAG 1 cut(s) 26
MwoI GCNNNNNNNGC 1 cut(s) 148
NdeII GATC 1 cut(s) 321
NlaIII CATG 2 cut(s) 155, 250
PfeI GAWTC 1 cut(s) 7
PspPI GGNCC 2 cut(s) 268, 310
RsaI GTAC 2 cut(s) 66, 186
RsaNI GTAC 2 cut(s) 65, 185
RseI CAYNNNNRTG 1 cut(s) 302
SaqAI TTAA 2 cut(s) 27, 177
Sau3AI GATC 1 cut(s) 321
Sau96I GGNCC 2 cut(s) 268, 310
SetI ASST 2 cut(s) 33, 211
SfaNI GCATC 2 cut(s) 4, 294
SinI GGWCC 2 cut(s) 268, 310
SmiMI CAYNNNNRTG 1 cut(s) 302
SmlI CTYRAG 1 cut(s) 26
SmoI CTYRAG 1 cut(s) 26
Sse9I AATT 2 cut(s) 68, 288
SspMI CTAG 1 cut(s) 188
TaaI ACNGT 1 cut(s) 272
TasI AATT 2 cut(s) 68, 288
TatI WGTACW 1 cut(s) 184
TfiI GAWTC 1 cut(s) 7
Tru1I TTAA 2 cut(s) 27, 177
Tru9I TTAA 2 cut(s) 27, 177
TscAI CASTG 1 cut(s) 66
TspDTI ATGAA 1 cut(s) 263
TspGWI ACGGA 1 cut(s) 114
TspRI CASTG 1 cut(s) 66
Vha464I CTTAAG 1 cut(s) 26
VpaK11BI GGWCC 2 cut(s) 268, 310
XspI CTAG 1 cut(s) 188
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.