Rh1AG193700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1A
OG0000441
Physical Location & Seq
Forward (+)
36987969 .. 36988780
812 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1AG193700.1

Sequence Viewer

Length: 399 bp
ATGAATGGTCGGCCTGAAAGCGCTTGTGGTTGTCTCATTGCCCTGTTGGTGAGTTTTGGTTTTGTGAACATACCCGGTTCATTGAACCAATTGGCGAAAAGAGAGAACAAGTCGCCCCTGTGGCATGGAGTGAAGACTAGAGTATTTGTTAAGGATGTACTAGCGATCTTGAATGAGGAAGCTGTCGGTGTGCAGGCTATGGATGCATATCTTGAAATATTAAGTACAAGCATCCAGAGCAGGGTGACCCTGTATCTCTGTTTGTGTCCACTTTTGATTGGTATGTGGTATGGTTTGAATTCTTTAGTGCATACCAAGTTGTTAGACGACTCAACTAGGTATTTCAGGTGGAATTGGGCATCTGTATTTGAGATGGTGATTGCGTATCTTGGGAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

14.8

Weight (kDa)

7.66

Isoelectric Point (pI)

45.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 298
AfaI GTAC 2 cut(s) 159, 226
AfeI AGCGCT 1 cut(s) 22
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 4 cut(s) 85, 172, 215, 298
AluBI AGCT 1 cut(s) 182
AluI AGCT 1 cut(s) 182
Alw26I GTCTC 1 cut(s) 38
Aor51HI AGCGCT 1 cut(s) 22
AoxI GGCC 1 cut(s) 11
ApoI RAATTY 1 cut(s) 298
AspLEI GCGC 1 cut(s) 23
AsuC2I CCSGG 1 cut(s) 75
AsuHPI GGTGA 3 cut(s) 61, 256, 388
BbsI GAAGAC 1 cut(s) 140
BccI CCATC 1 cut(s) 367
BcnI CCSGG 1 cut(s) 75
BcoDI GTCTC 1 cut(s) 38
BfaI CTAG 3 cut(s) 138, 161, 336
BfoI RGCGCY 1 cut(s) 24
BglI GCCNNNNNGGC 1 cut(s) 121
Bme1390I CCNGG 1 cut(s) 75
BmrFI CCNGG 1 cut(s) 75
BmsI GCATC 3 cut(s) 193, 240, 368
BpiI GAAGAC 1 cut(s) 140
BpuMI CCSGG 1 cut(s) 75
BsaBI GATNNNNATC 1 cut(s) 207
Bsc4I CCNNNNNNNGG 1 cut(s) 241
Bse3DI GCAATG 1 cut(s) 36
Bse8I GATNNNNATC 1 cut(s) 207
BseGI GGATG 3 cut(s) 160, 208, 231
BseJI GATNNNNATC 1 cut(s) 207
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMI GCAATG 1 cut(s) 36
BsgI GTGCAG 1 cut(s) 212
BshFI GGCC 1 cut(s) 13
BsiSI CCGG 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 1 cut(s) 38
BsnI GGCC 1 cut(s) 13
Bsp143I GATC 1 cut(s) 165
BspANI GGCC 1 cut(s) 13
BsrDI GCAATG 1 cut(s) 36
BssMI GATC 1 cut(s) 165
BstC8I GCNNGC 1 cut(s) 195
BstEII GGTNACC 1 cut(s) 244
BstF5I GGATG 3 cut(s) 160, 208, 231
BstH2I RGCGCY 1 cut(s) 24
BstHHI GCGC 1 cut(s) 23
BstKTI GATC 1 cut(s) 168
BstMAI GTCTC 1 cut(s) 38
BstMBI GATC 1 cut(s) 165
BstMWI GCNNNNNNNGC 3 cut(s) 121, 203, 237
BstPI GGTNACC 1 cut(s) 244
BstSCI CCNGG 1 cut(s) 73
BstV2I GAAGAC 1 cut(s) 140
BsuRI GGCC 1 cut(s) 13
BtsCI GGATG 3 cut(s) 160, 208, 231
Cac8I GCNNGC 1 cut(s) 195
CfoI GCGC 1 cut(s) 23
Csp6I GTAC 2 cut(s) 158, 225
CviAII CATG 1 cut(s) 125
CviJI RGCY 3 cut(s) 13, 182, 197
CviKI_1 RGCY 3 cut(s) 13, 182, 197
CviQI GTAC 2 cut(s) 158, 225
DpnI GATC 1 cut(s) 167
DpnII GATC 1 cut(s) 165
Eco47III AGCGCT 1 cut(s) 22
Eco91I GGTNACC 1 cut(s) 244
EcoO65I GGTNACC 1 cut(s) 244
EcoRI GAATTC 1 cut(s) 298
EcoT22I ATGCAT 1 cut(s) 208
FaeI CATG 1 cut(s) 128
FaiI YATR 7 cut(s) 71, 126, 200, 208, 284, 291, 312
FatI CATG 1 cut(s) 124
FokI GGATG 3 cut(s) 167, 215, 218
FspBI CTAG 3 cut(s) 138, 161, 336
GlaI GCGC 1 cut(s) 22
HaeII RGCGCY 1 cut(s) 24
HaeIII GGCC 1 cut(s) 13
HapII CCGG 1 cut(s) 75
HhaI GCGC 1 cut(s) 23
Hin1II CATG 1 cut(s) 128
Hin6I GCGC 1 cut(s) 21
HinP1I GCGC 1 cut(s) 21
HinfI GANTC 1 cut(s) 329
HpaII CCGG 1 cut(s) 75
HphI GGTGA 3 cut(s) 61, 256, 388
Hpy166II GTNNAC 2 cut(s) 67, 269
Hpy188III TCNNGA 3 cut(s) 169, 212, 235
Hpy8I GTNNAC 2 cut(s) 67, 269
HpyCH4V TGCA 3 cut(s) 193, 206, 310
HpyF10VI GCNNNNNNNGC 3 cut(s) 121, 203, 237
Hsp92II CATG 1 cut(s) 128
HspAI GCGC 1 cut(s) 21
Kzo9I GATC 1 cut(s) 165
LpnPI CCDG 9 cut(s) 27, 56, 88, 131, 179, 226, 248, 263, 331
LweI GCATC 3 cut(s) 193, 240, 368
MaeI CTAG 3 cut(s) 138, 161, 336
MaeIII GTNAC 1 cut(s) 244
MalI GATC 1 cut(s) 167
MboI GATC 1 cut(s) 165
MboII GAAGA 1 cut(s) 145
MfeI CAATTG 1 cut(s) 89
MluCI AATT 4 cut(s) 89, 298, 352, 394
MlyI GAGTC 1 cut(s) 323
MnlI CCTC 1 cut(s) 169
Mph1103I ATGCAT 1 cut(s) 208
MseI TTAA 2 cut(s) 150, 221
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 1 cut(s) 75
MunI CAATTG 1 cut(s) 89
MwoI GCNNNNNNNGC 3 cut(s) 121, 203, 237
NciI CCSGG 1 cut(s) 75
NdeII GATC 1 cut(s) 165
NlaIII CATG 1 cut(s) 128
NmuCI GTSAC 1 cut(s) 244
NsiI ATGCAT 1 cut(s) 208
PleI GAGTC 1 cut(s) 323
PpsI GAGTC 1 cut(s) 323
PspEI GGTNACC 1 cut(s) 244
RsaI GTAC 2 cut(s) 159, 226
RsaNI GTAC 2 cut(s) 158, 225
SaqAI TTAA 2 cut(s) 150, 221
Sau3AI GATC 1 cut(s) 165
SchI GAGTC 1 cut(s) 323
ScrFI CCNGG 1 cut(s) 75
SetI ASST 3 cut(s) 184, 341, 350
SfaNI GCATC 3 cut(s) 193, 240, 368
Sse9I AATT 4 cut(s) 89, 298, 352, 394
SspI AATATT 1 cut(s) 219
SspMI CTAG 3 cut(s) 138, 161, 336
StyD4I CCNGG 1 cut(s) 73
TasI AATT 4 cut(s) 89, 298, 352, 394
TatI WGTACW 2 cut(s) 157, 224
Tru1I TTAA 2 cut(s) 150, 221
Tru9I TTAA 2 cut(s) 150, 221
TseFI GTSAC 1 cut(s) 244
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 2 cut(s) 17, 69
XapI RAATTY 1 cut(s) 298
XspI CTAG 3 cut(s) 138, 161, 336
Zsp2I ATGCAT 1 cut(s) 208
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.