Rh6DG106700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000441
Physical Location & Seq
Forward (+)
13742487 .. 13743511
1025 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG106700.1

Sequence Viewer

Length: 594 bp
ATGTTCCAGCTGTTACCGACCCAATTCTACTTGGAAGAAAGCCAAGAGGGACCTTCAAGCAATGAGAAAGATGTACCTGAATTGGAGAAAAGGGTTCAAGAGTTTGCTGATTTGTTGGAGGTTGAGCGAGCCAAAAATGAGACTCTTAGTGCGGAAAATTTGAAACTATGCATGGAGATAGGATTGCTCAGGCAAGCCATTCCTAAAGACGAGATTCCAAATGTGAATTCAAGGAAGTTGAGGACAAAAGAACAATGTAAAAAACCATCATTCCTTGAAGGTTATATCATTGGCGACATTAGAGCCAAAAGAGGTAAGGAAAAGATCATTGATGAAATAGGTGATGCTGTTGTGGAAGAACCAGCTGTGAAGAAGGAGAAGAAACAGACTGTTGCGCAACAAATAAGTGTGAGAAGGTTAAGGGTTGGAAAGTTTATGTCCCAGGTAAATGCAGAAAATCTCAAGGAATATTTGTCCAAAGCTAGCAGGAGTTTGCTGTGGCATGGTGCGCATTCAAAAGTGAAGATGCTTTGGAAATATTGCATGAGGAAGCTGTTAGTCGGCAAGTGCTGGATGCGTATTTTGAAATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

22.88

Weight (kDa)

9.42

Isoelectric Point (pI)

50.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 2 cut(s) 396, 510
AciI CCGC 1 cut(s) 152
AcsI RAATTY 3 cut(s) 157, 226, 587
AfaI GTAC 1 cut(s) 75
AgsI TTSAA 7 cut(s) 57, 98, 163, 231, 278, 516, 586
AjnI CCWGG 1 cut(s) 441
AjuI GAANNNNNNNTTGG 2 cut(s) 211, 243
AluBI AGCT 4 cut(s) 10, 365, 482, 553
AluI AGCT 4 cut(s) 10, 365, 482, 553
Alw26I GTCTC 1 cut(s) 134
ApoI RAATTY 3 cut(s) 157, 226, 587
AspLEI GCGC 2 cut(s) 397, 511
AspS9I GGNCC 1 cut(s) 50
AsuHPI GGTGA 1 cut(s) 353
AsuNHI GCTAGC 1 cut(s) 482
AvaII GGWCC 1 cut(s) 50
BccI CCATC 1 cut(s) 274
BciT130I CCWGG 1 cut(s) 443
BcoDI GTCTC 1 cut(s) 134
BfaI CTAG 1 cut(s) 483
Bme1390I CCNGG 1 cut(s) 443
Bme18I GGWCC 1 cut(s) 50
BmgT120I GGNCC 1 cut(s) 50
BmiI GGNNCC 1 cut(s) 51
BmrFI CCNGG 1 cut(s) 443
BmsI GCATC 3 cut(s) 334, 516, 564
BmtI GCTAGC 1 cut(s) 486
Bpu10I CCTNAGC 1 cut(s) 188
BpuEI CTTGAG 1 cut(s) 446
BsaJI CCNNGG 1 cut(s) 441
Bse3DI GCAATG 1 cut(s) 67
BseBI CCWGG 1 cut(s) 443
BseDI CCNNGG 1 cut(s) 441
BseGI GGATG 1 cut(s) 579
BseMI GCAATG 1 cut(s) 67
BseMII CTCAG 1 cut(s) 202
BslFI GGGAC 2 cut(s) 63, 424
BsmAI GTCTC 1 cut(s) 134
BsmFI GGGAC 2 cut(s) 63, 424
BsmI GAATGC 1 cut(s) 511
Bsp143I GATC 1 cut(s) 324
BspACI CCGC 1 cut(s) 152
BspCNI CTCAG 1 cut(s) 201
BspLI GGNNCC 1 cut(s) 51
BspOI GCTAGC 1 cut(s) 486
BsrDI GCAATG 1 cut(s) 67
BssECI CCNNGG 1 cut(s) 441
BssMI GATC 1 cut(s) 324
Bst2UI CCWGG 1 cut(s) 443
Bst4CI ACNGT 1 cut(s) 391
BstC8I GCNNGC 3 cut(s) 129, 195, 484
BstDEI CTNAG 2 cut(s) 146, 188
BstF5I GGATG 1 cut(s) 579
BstHHI GCGC 2 cut(s) 397, 511
BstKTI GATC 1 cut(s) 327
BstMAI GTCTC 1 cut(s) 134
BstMBI GATC 1 cut(s) 324
BstMWI GCNNNNNNNGC 1 cut(s) 508
BstNI CCWGG 1 cut(s) 443
BstSCI CCNGG 1 cut(s) 441
BtsCI GGATG 1 cut(s) 579
Cac8I GCNNGC 3 cut(s) 129, 195, 484
CfoI GCGC 2 cut(s) 397, 511
Cfr13I GGNCC 1 cut(s) 50
Csp6I GTAC 1 cut(s) 74
CviAII CATG 3 cut(s) 172, 503, 544
CviJI RGCY 8 cut(s) 10, 42, 131, 197, 305, 365, 482, 553
CviKI_1 RGCY 8 cut(s) 10, 42, 131, 197, 305, 365, 482, 553
CviQI GTAC 1 cut(s) 74
DdeI CTNAG 2 cut(s) 146, 188
DpnI GATC 1 cut(s) 326
DpnII GATC 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 50
EcoO109I RGGNCCY 1 cut(s) 50
EcoRI GAATTC 1 cut(s) 226
EcoRII CCWGG 1 cut(s) 441
EcoT22I ATGCAT 1 cut(s) 173
FaeI CATG 3 cut(s) 175, 506, 547
FaiI YATR 6 cut(s) 169, 173, 285, 437, 504, 545
FaqI GGGAC 2 cut(s) 63, 424
FatI CATG 3 cut(s) 171, 502, 543
FokI GGATG 1 cut(s) 586
FspAI RTGCGCAY 1 cut(s) 510
FspBI CTAG 1 cut(s) 483
FspI TGCGCA 2 cut(s) 396, 510
GlaI GCGC 2 cut(s) 396, 510
HhaI GCGC 2 cut(s) 397, 511
Hin1II CATG 3 cut(s) 175, 506, 547
Hin6I GCGC 2 cut(s) 395, 509
HinP1I GCGC 2 cut(s) 395, 509
HinfI GANTC 2 cut(s) 142, 214
HphI GGTGA 1 cut(s) 353
Hpy188III TCNNGA 1 cut(s) 98
HpyAV CCTTC 4 cut(s) 63, 272, 367, 408
HpyCH4III ACNGT 1 cut(s) 391
HpyCH4V TGCA 3 cut(s) 171, 452, 543
HpyF10VI GCNNNNNNNGC 1 cut(s) 508
HpyF3I CTNAG 2 cut(s) 146, 188
Hsp92II CATG 3 cut(s) 175, 506, 547
HspAI GCGC 2 cut(s) 395, 509
Kzo9I GATC 1 cut(s) 324
LpnPI CCDG 8 cut(s) 20, 90, 175, 375, 428, 455, 472, 556
LweI GCATC 3 cut(s) 334, 516, 564
MaeI CTAG 1 cut(s) 483
MaeIII GTNAC 1 cut(s) 12
MalI GATC 1 cut(s) 326
MboI GATC 1 cut(s) 324
MboII GAAGA 5 cut(s) 47, 368, 382, 391, 535
MluCI AATT 5 cut(s) 23, 80, 157, 226, 587
MlyI GAGTC 1 cut(s) 136
MmeI TCCRAC 2 cut(s) 96, 406
MnlI CCTC 5 cut(s) 40, 112, 234, 305, 540
Mph1103I ATGCAT 1 cut(s) 173
MseI TTAA 2 cut(s) 419, 592
MspA1I CMGCKG 2 cut(s) 10, 365
MspR9I CCNGG 1 cut(s) 443
Mva1269I GAATGC 1 cut(s) 511
MvaI CCWGG 1 cut(s) 443
MwoI GCNNNNNNNGC 1 cut(s) 508
NdeII GATC 1 cut(s) 324
NheI GCTAGC 1 cut(s) 482
NlaIII CATG 3 cut(s) 175, 506, 547
NlaIV GGNNCC 1 cut(s) 51
NsbI TGCGCA 2 cut(s) 396, 510
NsiI ATGCAT 1 cut(s) 173
PctI GAATGC 1 cut(s) 511
PfeI GAWTC 1 cut(s) 214
PleI GAGTC 1 cut(s) 136
PpsI GAGTC 1 cut(s) 136
PpuMI RGGWCCY 1 cut(s) 50
Psp5II RGGWCCY 1 cut(s) 50
Psp6I CCWGG 1 cut(s) 441
PspGI CCWGG 1 cut(s) 441
PspN4I GGNNCC 1 cut(s) 51
PspPI GGNCC 1 cut(s) 50
PspPPI RGGWCCY 1 cut(s) 50
PvuII CAGCTG 2 cut(s) 10, 365
RsaI GTAC 1 cut(s) 75
RsaNI GTAC 1 cut(s) 74
SaqAI TTAA 2 cut(s) 419, 592
Sau3AI GATC 1 cut(s) 324
Sau96I GGNCC 1 cut(s) 50
SchI GAGTC 1 cut(s) 136
ScrFI CCNGG 1 cut(s) 443
SfaNI GCATC 3 cut(s) 334, 516, 564
SinI GGWCC 1 cut(s) 50
SmlI CTYRAG 1 cut(s) 461
SmoI CTYRAG 1 cut(s) 461
Sse9I AATT 5 cut(s) 23, 80, 157, 226, 587
SsiI CCGC 1 cut(s) 152
SspI AATATT 2 cut(s) 470, 539
SspMI CTAG 1 cut(s) 483
StyD4I CCNGG 1 cut(s) 441
TaaI ACNGT 1 cut(s) 391
TasI AATT 5 cut(s) 23, 80, 157, 226, 587
TfiI GAWTC 1 cut(s) 214
Tru1I TTAA 2 cut(s) 419, 592
Tru9I TTAA 2 cut(s) 419, 592
TspDTI ATGAA 1 cut(s) 348
VpaK11BI GGWCC 1 cut(s) 50
XapI RAATTY 3 cut(s) 157, 226, 587
XspI CTAG 1 cut(s) 483
Zsp2I ATGCAT 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.