RchiOBHm_Chr5g0033751

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000441
Physical Location & Seq
Forward (+)
27611844 .. 27612311
468 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ31281

Sequence Viewer

Length: 273 bp
ATGAGTTCCTATTCAATTTGCTGTCTCCGTCTCACATTGGTTTCGTCGCCCCTGTGGCATGGAGTGAAGACTGGAGTATTTGTTAAGGATGTACTACTGATCTTGAATGAGGAAGTTGTCGGTGTGCAGGCTATGGATGCATATCTTGAAATATTAAGTCACAAGCATCCAGAGCAGGGTGACCCTGTATCTCTGTTTGTGTCCACTTTTGATTGGTATGTGGTATGGTTTGAATTCTTTGGTGCATACCAAGTTGTTAGACGACTCAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

90

Amino Acids

10.33

Weight (kDa)

5.41

Isoelectric Point (pI)

55.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 233
AfaI GTAC 1 cut(s) 93
AfiI CCNNNNNNNGG 1 cut(s) 176
AgsI TTSAA 4 cut(s) 15, 106, 149, 233
Alw26I GTCTC 2 cut(s) 29, 35
ApoI RAATTY 1 cut(s) 233
AsuHPI GGTGA 1 cut(s) 191
BbsI GAAGAC 1 cut(s) 74
BcoDI GTCTC 2 cut(s) 29, 35
BglI GCCNNNNNGGC 1 cut(s) 55
BmsI GCATC 2 cut(s) 127, 175
BpiI GAAGAC 1 cut(s) 74
BpmI CTGGAG 1 cut(s) 93
BsaBI GATNNNNATC 1 cut(s) 141
BsaXI ACNNNNNCTCC 2 cut(s) 66, 96
Bsc4I CCNNNNNNNGG 1 cut(s) 176
Bse1I ACTGG 1 cut(s) 76
Bse8I GATNNNNATC 1 cut(s) 141
BseGI GGATG 3 cut(s) 94, 142, 166
BseJI GATNNNNATC 1 cut(s) 141
BseLI CCNNNNNNNGG 1 cut(s) 176
BseNI ACTGG 1 cut(s) 76
BsgI GTGCAG 1 cut(s) 146
BslI CCNNNNNNNGG 1 cut(s) 176
BsmAI GTCTC 2 cut(s) 29, 35
BsmBI CGTCTC 1 cut(s) 35
Bsp143I GATC 1 cut(s) 99
BsrI ACTGG 1 cut(s) 76
BssMI GATC 1 cut(s) 99
BstC8I GCNNGC 1 cut(s) 129
BstEII GGTNACC 1 cut(s) 179
BstF5I GGATG 3 cut(s) 94, 142, 166
BstKTI GATC 1 cut(s) 102
BstMAI GTCTC 2 cut(s) 29, 35
BstMBI GATC 1 cut(s) 99
BstMWI GCNNNNNNNGC 3 cut(s) 55, 137, 172
BstPI GGTNACC 1 cut(s) 179
BstV2I GAAGAC 1 cut(s) 74
BtsCI GGATG 3 cut(s) 94, 142, 166
Cac8I GCNNGC 1 cut(s) 129
Csp6I GTAC 1 cut(s) 92
CviAII CATG 1 cut(s) 59
CviJI RGCY 1 cut(s) 131
CviKI_1 RGCY 1 cut(s) 131
CviQI GTAC 1 cut(s) 92
DpnI GATC 1 cut(s) 101
DpnII GATC 1 cut(s) 99
Eco91I GGTNACC 1 cut(s) 179
EcoO65I GGTNACC 1 cut(s) 179
EcoRI GAATTC 1 cut(s) 233
EcoT22I ATGCAT 1 cut(s) 142
Esp3I CGTCTC 1 cut(s) 35
FaeI CATG 1 cut(s) 62
FaiI YATR 6 cut(s) 60, 134, 142, 219, 226, 247
FatI CATG 1 cut(s) 58
FokI GGATG 3 cut(s) 101, 149, 153
GsuI CTGGAG 1 cut(s) 93
Hin1II CATG 1 cut(s) 62
HinfI GANTC 1 cut(s) 264
HphI GGTGA 1 cut(s) 191
Hpy166II GTNNAC 1 cut(s) 204
Hpy188III TCNNGA 3 cut(s) 103, 146, 170
Hpy8I GTNNAC 1 cut(s) 204
Hpy99I CGWCG 1 cut(s) 49
HpyCH4V TGCA 3 cut(s) 127, 140, 245
HpyF10VI GCNNNNNNNGC 3 cut(s) 55, 137, 172
Hsp92II CATG 1 cut(s) 62
Kzo9I GATC 1 cut(s) 99
LpnPI CCDG 6 cut(s) 57, 65, 113, 161, 183, 198
LweI GCATC 2 cut(s) 127, 175
MaeIII GTNAC 2 cut(s) 158, 179
MalI GATC 1 cut(s) 101
MboI GATC 1 cut(s) 99
MboII GAAGA 1 cut(s) 79
MluCI AATT 3 cut(s) 15, 233, 268
MlyI GAGTC 1 cut(s) 258
MnlI CCTC 1 cut(s) 103
Mph1103I ATGCAT 1 cut(s) 142
MseI TTAA 2 cut(s) 84, 155
MwoI GCNNNNNNNGC 3 cut(s) 55, 137, 172
NdeII GATC 1 cut(s) 99
NlaIII CATG 1 cut(s) 62
NmuCI GTSAC 2 cut(s) 158, 179
NsiI ATGCAT 1 cut(s) 142
PleI GAGTC 1 cut(s) 258
PpsI GAGTC 1 cut(s) 258
PspEI GGTNACC 1 cut(s) 179
RsaI GTAC 1 cut(s) 93
RsaNI GTAC 1 cut(s) 92
SaqAI TTAA 2 cut(s) 84, 155
Sau3AI GATC 1 cut(s) 99
SchI GAGTC 1 cut(s) 258
SfaNI GCATC 2 cut(s) 127, 175
Sse9I AATT 3 cut(s) 15, 233, 268
SspI AATATT 1 cut(s) 153
TasI AATT 3 cut(s) 15, 233, 268
TatI WGTACW 1 cut(s) 91
Tru1I TTAA 2 cut(s) 84, 155
Tru9I TTAA 2 cut(s) 84, 155
TseFI GTSAC 2 cut(s) 158, 179
Tsp45I GTSAC 2 cut(s) 158, 179
TspGWI ACGGA 1 cut(s) 17
XapI RAATTY 1 cut(s) 233
Zsp2I ATGCAT 1 cut(s) 142
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.