RLG00000026296

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0000441
Physical Location & Seq
Forward (+)
1969919 .. 1970380
462 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026296

Sequence Viewer

Length: 405 bp
ATGGCTAAAGAGTACACCCACCTGGAATTTAGGTGCGACCTTCTCAAGTTTGGACGTGTTATGACCGACGAGTTAAAGGCTGAAATTACTGAAGAGCGGCAAATAATAGACTCTGCTTGTAGGAAGTCTGATAGTGACATCGTATCTCTTTTAAAATGCTTTGACAAGGAAAAAAACTCATTTCAGTTTGGGGAAATTACTGGTACAATATCTATAGGTGACATTGCCGAACTGTTTGGTTTGAATATTGAAGGCCGTGAGATCAACCTTAACCAGAAGAAGATATGTTTGCACTTGAAAGTGATAGATACATCATTTGGACATCCATGTCTGTTTGCAGCAAGCATGCTGAGTAACCTTCAAATGCATACGACAATTCAGCATCTCCACCACCAAATCCCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

135

Amino Acids

15.29

Weight (kDa)

5.95

Isoelectric Point (pI)

33.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 327
AccBSI CCGCTC 1 cut(s) 97
AciI CCGC 1 cut(s) 97
AcsI RAATTY 1 cut(s) 26
AcuI CTGAAG 1 cut(s) 111
AfaI GTAC 2 cut(s) 14, 205
AflIII ACRYGT 1 cut(s) 55
AgsI TTSAA 4 cut(s) 244, 251, 298, 362
AjiI CACGTC 1 cut(s) 56
AjnI CCWGG 1 cut(s) 21
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 1 cut(s) 338
ApoI RAATTY 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 230
BbvI GCAGC 1 cut(s) 350
BceAI ACGGC 1 cut(s) 240
BciT130I CCWGG 1 cut(s) 23
BfmI CTRYAG 1 cut(s) 213
BisI GCNGC 2 cut(s) 98, 339
BlsI GCNGC 2 cut(s) 99, 340
Bme1390I CCNGG 1 cut(s) 23
BmgBI CACGTC 1 cut(s) 56
BmrFI CCNGG 1 cut(s) 23
BmsI GCATC 1 cut(s) 391
BpuEI CTTGAG 1 cut(s) 29
Bse1I ACTGG 1 cut(s) 205
Bse3DI GCAATG 1 cut(s) 222
BseBI CCWGG 1 cut(s) 23
BseGI GGATG 1 cut(s) 322
BseMI GCAATG 1 cut(s) 222
BseMII CTCAG 1 cut(s) 341
BseNI ACTGG 1 cut(s) 205
BseXI GCAGC 1 cut(s) 350
BshFI GGCC 1 cut(s) 255
BsnI GGCC 1 cut(s) 255
Bsp143I GATC 1 cut(s) 261
BspACI CCGC 1 cut(s) 97
BspANI GGCC 1 cut(s) 255
BspCNI CTCAG 1 cut(s) 342
BspQI GCTCTTC 1 cut(s) 87
BsrBI CCGCTC 1 cut(s) 97
BsrDI GCAATG 1 cut(s) 222
BsrI ACTGG 1 cut(s) 205
BssMI GATC 1 cut(s) 261
Bst2UI CCWGG 1 cut(s) 23
Bst4CI ACNGT 1 cut(s) 234
Bst6I CTCTTC 1 cut(s) 87
BstC8I GCNNGC 2 cut(s) 343, 347
BstDEI CTNAG 1 cut(s) 350
BstF5I GGATG 1 cut(s) 322
BstKTI GATC 1 cut(s) 264
BstMBI GATC 1 cut(s) 261
BstNI CCWGG 1 cut(s) 23
BstNSI RCATGY 1 cut(s) 349
BstSCI CCNGG 1 cut(s) 21
BstSFI CTRYAG 1 cut(s) 213
BstV1I GCAGC 1 cut(s) 350
BsuRI GGCC 1 cut(s) 255
BtrI CACGTC 1 cut(s) 56
BtsCI GGATG 1 cut(s) 322
Cac8I GCNNGC 2 cut(s) 343, 347
Csp6I GTAC 2 cut(s) 13, 204
CviAII CATG 2 cut(s) 327, 346
CviJI RGCY 3 cut(s) 5, 80, 255
CviKI_1 RGCY 3 cut(s) 5, 80, 255
CviQI GTAC 2 cut(s) 13, 204
DdeI CTNAG 1 cut(s) 350
DpnI GATC 1 cut(s) 263
DpnII GATC 1 cut(s) 261
DraI TTTAAA 1 cut(s) 153
DrdI GACNNNNNNGTC 1 cut(s) 327
DseDI GACNNNNNNGTC 1 cut(s) 327
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
Eco57I CTGAAG 1 cut(s) 111
EcoRII CCWGG 1 cut(s) 21
EcoT22I ATGCAT 1 cut(s) 369
FaeI CATG 2 cut(s) 330, 349
FaiI YATR 6 cut(s) 62, 215, 286, 328, 347, 369
FatI CATG 2 cut(s) 326, 345
Fnu4HI GCNGC 2 cut(s) 98, 339
FokI GGATG 1 cut(s) 309
Fsp4HI GCNGC 2 cut(s) 98, 339
GluI GCNGC 2 cut(s) 98, 339
HaeIII GGCC 1 cut(s) 255
Hin1II CATG 2 cut(s) 330, 349
HinfI GANTC 1 cut(s) 110
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 1 cut(s) 15
Hpy188I TCNGA 1 cut(s) 130
Hpy8I GTNNAC 1 cut(s) 15
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 3 cut(s) 50, 245, 368
HpyCH4III ACNGT 1 cut(s) 234
HpyCH4IV ACGT 1 cut(s) 55
HpyCH4V TGCA 3 cut(s) 292, 338, 367
HpyF3I CTNAG 1 cut(s) 350
HpySE526I ACGT 1 cut(s) 55
Hsp92II CATG 2 cut(s) 330, 349
Kzo9I GATC 1 cut(s) 261
LguI GCTCTTC 1 cut(s) 87
LpnPI CCDG 4 cut(s) 8, 35, 186, 287
Lsp1109I GCAGC 1 cut(s) 350
LweI GCATC 1 cut(s) 391
MaeII ACGT 1 cut(s) 55
MaeIII GTNAC 3 cut(s) 134, 218, 353
MalI GATC 1 cut(s) 263
MbiI CCGCTC 1 cut(s) 97
MboI GATC 1 cut(s) 261
MboII GAAGA 3 cut(s) 104, 289, 292
MluCI AATT 4 cut(s) 26, 84, 195, 375
MlyI GAGTC 1 cut(s) 104
Mph1103I ATGCAT 1 cut(s) 369
MseI TTAA 4 cut(s) 74, 152, 270, 403
MspR9I CCNGG 1 cut(s) 23
MvaI CCWGG 1 cut(s) 23
NdeII GATC 1 cut(s) 261
NlaIII CATG 2 cut(s) 330, 349
NmuCI GTSAC 2 cut(s) 134, 218
NsiI ATGCAT 1 cut(s) 369
NspI RCATGY 1 cut(s) 349
PaeI GCATGC 1 cut(s) 349
PciSI GCTCTTC 1 cut(s) 87
PkrI GCNGC 2 cut(s) 99, 340
PleI GAGTC 1 cut(s) 104
PpsI GAGTC 1 cut(s) 104
Psp6I CCWGG 1 cut(s) 21
PspGI CCWGG 1 cut(s) 21
RsaI GTAC 2 cut(s) 14, 205
RsaNI GTAC 2 cut(s) 13, 204
SapI GCTCTTC 1 cut(s) 87
SaqAI TTAA 4 cut(s) 74, 152, 270, 403
SatI GCNGC 2 cut(s) 98, 339
Sau3AI GATC 1 cut(s) 261
SchI GAGTC 1 cut(s) 104
ScrFI CCNGG 1 cut(s) 23
SetI ASST 7 cut(s) 24, 35, 42, 58, 220, 270, 360
SfaNI GCATC 1 cut(s) 391
SfcI CTRYAG 1 cut(s) 213
SmlI CTYRAG 1 cut(s) 44
SmoI CTYRAG 1 cut(s) 44
SphI GCATGC 1 cut(s) 349
Sse9I AATT 4 cut(s) 26, 84, 195, 375
SsiI CCGC 1 cut(s) 97
SspI AATATT 1 cut(s) 247
StyD4I CCNGG 1 cut(s) 21
TaaI ACNGT 1 cut(s) 234
TaiI ACGT 1 cut(s) 58
TaqII GACCGA 1 cut(s) 80
TasI AATT 4 cut(s) 26, 84, 195, 375
TatI WGTACW 1 cut(s) 12
TauI GCSGC 1 cut(s) 100
Tru1I TTAA 4 cut(s) 74, 152, 270, 403
Tru9I TTAA 4 cut(s) 74, 152, 270, 403
TseFI GTSAC 2 cut(s) 134, 218
TseI GCWGC 1 cut(s) 338
Tsp45I GTSAC 2 cut(s) 134, 218
XapI RAATTY 1 cut(s) 26
XceI RCATGY 1 cut(s) 349
Zsp2I ATGCAT 1 cut(s) 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.