RLG00000016551

No description available

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
Physical Location & Seq
Forward (+)
7579929 .. 7580793
865 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000016551

Sequence Viewer

Length: 429 bp
ATGGTCGCGAAACAAACCCTACTCGCTCACCTAGTTCCTCCTCTGAAGGTGTTTCCTGAATTCATATGGGTACTGATATCAGAGGAAAGAGGTAGCTTCACTAACAAAGCTTTAATCAAAAGTTTTCTATGTGGTCTGACCTTAATCAAGGGTTTATCCGAATATGGATCCGAATACAAGCTCTCGAATAAAGACCGGGACTTGCTTATCTGGTTGGGAGGTAACTCTGTTGAACATTTTCCTATAAGATCTAACAAGGAGTGTCCACAACAAGATTCTGGAAGTGTGGATTGTGAGATTGGAGTGATGTGCATTGTCAAGAAATTATCAGAAGGGGGAGTGGTGGAATCTACCTTAACCAAAGGTGTAATGGCGAATATGAGGGTACATCTTTTAGAAAGATTCTTAAATATGCCGAATGGTGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

143

Amino Acids

15.75

Weight (kDa)

7.67

Isoelectric Point (pI)

38.55

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 422
AccII CGCG 1 cut(s) 8
AclWI GGATC 2 cut(s) 162, 175
AcsI RAATTY 1 cut(s) 59
AcuI CTGAAG 1 cut(s) 65
AfaI GTAC 2 cut(s) 72, 387
AgsI TTSAA 1 cut(s) 233
AluBI AGCT 3 cut(s) 96, 110, 181
AluI AGCT 3 cut(s) 96, 110, 181
AlwI GGATC 2 cut(s) 162, 175
ApoI RAATTY 1 cut(s) 59
Asp700I GAANNNNTTC 1 cut(s) 237
AsuC2I CCSGG 1 cut(s) 197
AsuHPI GGTGA 1 cut(s) 20
BamHI GGATCC 1 cut(s) 167
BanI GGYRCC 1 cut(s) 422
BcnI CCSGG 1 cut(s) 197
BfaI CTAG 2 cut(s) 32, 427
BglII AGATCT 1 cut(s) 248
Bme1390I CCNGG 1 cut(s) 197
BmiI GGNNCC 2 cut(s) 169, 424
BmrFI CCNGG 1 cut(s) 197
BpuMI CCSGG 1 cut(s) 197
BseRI GAGGAG 1 cut(s) 30
Bsh1236I CGCG 1 cut(s) 8
BshNI GGYRCC 1 cut(s) 422
BsiSI CCGG 1 cut(s) 196
BslFI GGGAC 1 cut(s) 212
BsmFI GGGAC 1 cut(s) 212
Bsp143I GATC 2 cut(s) 167, 248
Bsp68I TCGCGA 1 cut(s) 8
BspFNI CGCG 1 cut(s) 8
BspLI GGNNCC 2 cut(s) 169, 424
BspPI GGATC 2 cut(s) 162, 175
BspT107I GGYRCC 1 cut(s) 422
BssMI GATC 2 cut(s) 167, 248
BstFNI CGCG 1 cut(s) 8
BstKTI GATC 2 cut(s) 170, 251
BstMBI GATC 2 cut(s) 167, 248
BstSCI CCNGG 1 cut(s) 195
BstUI CGCG 1 cut(s) 8
BstX2I RGATCY 2 cut(s) 167, 248
BstYI RGATCY 2 cut(s) 167, 248
BtuMI TCGCGA 1 cut(s) 8
Csp6I GTAC 2 cut(s) 71, 386
CviJI RGCY 3 cut(s) 96, 110, 181
CviKI_1 RGCY 3 cut(s) 96, 110, 181
CviQI GTAC 2 cut(s) 71, 386
DpnI GATC 2 cut(s) 169, 250
DpnII GATC 2 cut(s) 167, 248
Eco32I GATATC 1 cut(s) 78
Eco57I CTGAAG 1 cut(s) 65
EcoRI GAATTC 1 cut(s) 59
EcoRV GATATC 1 cut(s) 78
FaiI YATR 7 cut(s) 65, 67, 130, 165, 245, 380, 413
FaqI GGGAC 1 cut(s) 212
FauNDI CATATG 1 cut(s) 65
FspBI CTAG 2 cut(s) 32, 427
HapII CCGG 1 cut(s) 196
HindIII AAGCTT 1 cut(s) 108
HinfI GANTC 3 cut(s) 275, 347, 402
HpaII CCGG 1 cut(s) 196
HphI GGTGA 1 cut(s) 20
Hpy166II GTNNAC 1 cut(s) 266
Hpy188I TCNGA 6 cut(s) 45, 82, 138, 160, 172, 331
Hpy188III TCNNGA 5 cut(s) 7, 56, 184, 279, 319
Hpy8I GTNNAC 1 cut(s) 266
HpyAV CCTTC 2 cut(s) 40, 326
HpyCH4V TGCA 1 cut(s) 312
Kzo9I GATC 2 cut(s) 167, 248
LpnPI CCDG 4 cut(s) 69, 196, 209, 264
MaeI CTAG 2 cut(s) 32, 427
MaeIII GTNAC 1 cut(s) 221
MalI GATC 2 cut(s) 169, 250
MboI GATC 2 cut(s) 167, 248
MflI RGATCY 2 cut(s) 167, 248
MluCI AATT 2 cut(s) 59, 323
MnlI CCTC 6 cut(s) 48, 51, 76, 83, 212, 375
MroXI GAANNNNTTC 1 cut(s) 237
MseI TTAA 4 cut(s) 113, 143, 356, 407
MspI CCGG 1 cut(s) 196
MspR9I CCNGG 1 cut(s) 197
MvnI CGCG 1 cut(s) 8
NciI CCSGG 1 cut(s) 197
NdeI CATATG 1 cut(s) 65
NdeII GATC 2 cut(s) 167, 248
NlaIV GGNNCC 2 cut(s) 169, 424
NruI TCGCGA 1 cut(s) 8
PdmI GAANNNNTTC 1 cut(s) 237
PfeI GAWTC 3 cut(s) 275, 347, 402
PspN4I GGNNCC 2 cut(s) 169, 424
PsuI RGATCY 2 cut(s) 167, 248
RruI TCGCGA 1 cut(s) 8
RsaI GTAC 2 cut(s) 72, 387
RsaNI GTAC 2 cut(s) 71, 386
SaqAI TTAA 4 cut(s) 113, 143, 356, 407
Sau3AI GATC 2 cut(s) 167, 248
ScrFI CCNGG 1 cut(s) 197
Sse9I AATT 2 cut(s) 59, 323
SspMI CTAG 2 cut(s) 32, 427
StyD4I CCNGG 1 cut(s) 195
TaqI TCGA 1 cut(s) 185
TasI AATT 2 cut(s) 59, 323
TfiI GAWTC 3 cut(s) 275, 347, 402
Tru1I TTAA 4 cut(s) 113, 143, 356, 407
Tru9I TTAA 4 cut(s) 113, 143, 356, 407
TspDTI ATGAA 1 cut(s) 52
XapI RAATTY 1 cut(s) 59
XcmI CCANNNNNNNNNTGG 1 cut(s) 367
XmnI GAANNNNTTC 1 cut(s) 237
XspI CTAG 2 cut(s) 32, 427
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.