Rh6DG106600

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000441
Physical Location & Seq
Forward (+)
13741450 .. 13741896
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG106600.1

Sequence Viewer

Length: 447 bp
ATGGCGTATTACAATGGTACATTAATAGAATCTGCTTGCAAAAAATCTGATTTGGAAATAGTGGCTCTCTTAAAGTGTTTTAACCAGCAAAACAAAAGTTTTAAGTTTGGGGAGTTCACCGGTACTATAACCAGCAACGACATCTCTGAGTTGTTTGGCTTAACACTCATTGGGGAAGAAATTAACCTAGATCAGAAGAAGAAGAAAGATGATGACGGGTTCAGGACAAGACAACTGGGCGGAGTTCCGAGGATGAGCAAGGCAATATTAGAACAAAAAATAAAACATGTAGCTAAGTTGAGAGGGAATGAGGATGAAAAAGATTTTGTAAGGCTTGTCTGTCTCTACTTTTGCGTTACATTATTCCTCTGCAATAGTGGTAATGAACTCAGTTGGAATGTCCTCCCATATATAGAGGATATTGAAACAATGTCGCAGTATGCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

148

Amino Acids

16.88

Weight (kDa)

5.51

Isoelectric Point (pI)

43.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 240
AfaI GTAC 2 cut(s) 19, 124
AflIII ACRYGT 1 cut(s) 286
AgeI ACCGGT 1 cut(s) 119
AgsI TTSAA 1 cut(s) 425
AluBI AGCT 1 cut(s) 293
AluI AGCT 1 cut(s) 293
Alw26I GTCTC 1 cut(s) 347
AseI ATTAAT 1 cut(s) 23
AsiGI ACCGGT 1 cut(s) 119
AsuHPI GGTGA 1 cut(s) 109
BcoDI GTCTC 1 cut(s) 347
BfaI CTAG 1 cut(s) 188
BmrI ACTGGG 1 cut(s) 245
BmuI ACTGGG 1 cut(s) 245
BsaJI CCNNGG 1 cut(s) 248
BsaWI WCCGGW 1 cut(s) 119
Bse118I RCCGGY 1 cut(s) 119
Bse1I ACTGG 1 cut(s) 240
BseDI CCNNGG 1 cut(s) 248
BseGI GGATG 2 cut(s) 258, 319
BseMII CTCAG 2 cut(s) 138, 403
BseNI ACTGG 1 cut(s) 240
BshTI ACCGGT 1 cut(s) 119
BsiSI CCGG 1 cut(s) 120
BsmAI GTCTC 1 cut(s) 347
Bsp143I GATC 1 cut(s) 190
BspACI CCGC 1 cut(s) 240
BspCNI CTCAG 2 cut(s) 139, 402
BsrFI RCCGGY 1 cut(s) 119
BsrI ACTGG 1 cut(s) 240
BssAI RCCGGY 1 cut(s) 119
BssECI CCNNGG 1 cut(s) 248
BssMI GATC 1 cut(s) 190
BstC8I GCNNGC 1 cut(s) 37
BstDEI CTNAG 3 cut(s) 147, 294, 389
BstF5I GGATG 2 cut(s) 258, 319
BstKTI GATC 1 cut(s) 193
BstMAI GTCTC 1 cut(s) 347
BstMBI GATC 1 cut(s) 190
BstNSI RCATGY 1 cut(s) 290
BtsCI GGATG 2 cut(s) 258, 319
Cac8I GCNNGC 1 cut(s) 37
Cfr10I RCCGGY 1 cut(s) 119
Csp6I GTAC 2 cut(s) 18, 123
CspAI ACCGGT 1 cut(s) 119
CviAII CATG 2 cut(s) 287, 444
CviJI RGCY 4 cut(s) 65, 159, 293, 334
CviKI_1 RGCY 4 cut(s) 65, 159, 293, 334
CviQI GTAC 2 cut(s) 18, 123
DdeI CTNAG 3 cut(s) 147, 294, 389
DpnI GATC 1 cut(s) 192
DpnII GATC 1 cut(s) 190
EciI GGCGGA 1 cut(s) 255
EcoT22I ATGCAT 1 cut(s) 445
FaeI CATG 2 cut(s) 290, 447
FaiI YATR 7 cut(s) 128, 288, 409, 411, 413, 441, 445
FatI CATG 2 cut(s) 286, 443
FokI GGATG 2 cut(s) 265, 326
FspBI CTAG 1 cut(s) 188
HapII CCGG 1 cut(s) 120
Hin1II CATG 2 cut(s) 290, 447
HinfI GANTC 1 cut(s) 29
HpaII CCGG 1 cut(s) 120
HphI GGTGA 1 cut(s) 109
Hpy166II GTNNAC 1 cut(s) 117
Hpy188I TCNGA 4 cut(s) 49, 148, 195, 249
Hpy188III TCNNGA 1 cut(s) 223
Hpy8I GTNNAC 1 cut(s) 117
HpyCH4V TGCA 3 cut(s) 39, 372, 443
HpyF3I CTNAG 3 cut(s) 147, 294, 389
Hsp92II CATG 2 cut(s) 290, 447
Kzo9I GATC 1 cut(s) 190
LpnPI CCDG 5 cut(s) 98, 133, 145, 208, 221
MaeI CTAG 1 cut(s) 188
MaeIII GTNAC 1 cut(s) 355
MalI GATC 1 cut(s) 192
MboI GATC 1 cut(s) 190
MboII GAAGA 4 cut(s) 188, 208, 211, 214
MluCI AATT 1 cut(s) 180
MmeI TCCRAC 1 cut(s) 374
MnlI CCTC 6 cut(s) 243, 296, 304, 377, 409, 413
Mph1103I ATGCAT 1 cut(s) 445
MseI TTAA 6 cut(s) 23, 71, 81, 102, 161, 183
MspI CCGG 1 cut(s) 120
NdeII GATC 1 cut(s) 190
NlaIII CATG 2 cut(s) 290, 447
NsiI ATGCAT 1 cut(s) 445
NspI RCATGY 1 cut(s) 290
PciI ACATGT 1 cut(s) 286
PfeI GAWTC 1 cut(s) 29
PinAI ACCGGT 1 cut(s) 119
PscI ACATGT 1 cut(s) 286
PshBI ATTAAT 1 cut(s) 23
RsaI GTAC 2 cut(s) 19, 124
RsaNI GTAC 2 cut(s) 18, 123
SaqAI TTAA 6 cut(s) 23, 71, 81, 102, 161, 183
Sau3AI GATC 1 cut(s) 190
SetI ASST 2 cut(s) 189, 295
Sse9I AATT 1 cut(s) 180
SsiI CCGC 1 cut(s) 240
SspI AATATT 1 cut(s) 267
SspMI CTAG 1 cut(s) 188
TasI AATT 1 cut(s) 180
TfiI GAWTC 1 cut(s) 29
Tru1I TTAA 6 cut(s) 23, 71, 81, 102, 161, 183
Tru9I TTAA 6 cut(s) 23, 71, 81, 102, 161, 183
TspDTI ATGAA 2 cut(s) 330, 399
VspI ATTAAT 1 cut(s) 23
XceI RCATGY 1 cut(s) 290
XspI CTAG 1 cut(s) 188
Zsp2I ATGCAT 1 cut(s) 445
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.