RLG00000023215

Plant mobile domain

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
Physical Location & Seq
Reverse (-)
20065173 .. 20065825
653 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023215

Sequence Viewer

Length: 531 bp
ATGGCTAAAGAGTACACCCACCTGGAATTTAGGTGCGACCTTCTTAAGTTTGGACTTGTTATGACCGACGAGTTAAGGACTGAAATTACTGAAGTGAAGCTTGATCTGATAGAGTCCACACCGTTCAGGGATTTGTTTAGAGCTTTTTATGAGCGGCAAATAATAGACTCTGCTTGTAGGAAGTCTGATAGTGACATCGTATCTCTTTTAAAATGCTTTGACAAGGAAAAAAACTCATTTCAGTTTGGGCAAATTACTGGTACAATATCTGTAGGTGACATTGCTGAACTGTTTGGTTTGAATATTGAAGGCCGTGAGATCAACCTTAACCAGAACAAGAGAAAAGGGGATTCTGATTTCATTAAAAGACGATTCCCTGGAGTGAAAAGGTTGTCCAAGGTGATCCTGGAGCAACAAATCAAAGATGTATCTAAACTGAGGGGGCTTGAGAATGAATGTGATTTTGTTAGGTGTGGCAAACTTCCCAAAATGGTGGTTCACATCATCAGGGGTGTCTGGTTCAAGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

177

Amino Acids

20.43

Weight (kDa)

8.79

Isoelectric Point (pI)

48.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 154
AciI CCGC 1 cut(s) 154
AclWI GGATC 1 cut(s) 397
AcsI RAATTY 1 cut(s) 26
AcuI CTGAAG 1 cut(s) 111
AfaI GTAC 2 cut(s) 14, 262
AflII CTTAAG 1 cut(s) 44
AgsI TTSAA 3 cut(s) 301, 308, 523
AjnI CCWGG 3 cut(s) 21, 376, 405
AluBI AGCT 2 cut(s) 100, 143
AluI AGCT 2 cut(s) 100, 143
AlwI GGATC 1 cut(s) 397
AoxI GGCC 1 cut(s) 310
ApoI RAATTY 1 cut(s) 26
AsuHPI GGTGA 2 cut(s) 287, 412
BceAI ACGGC 1 cut(s) 297
BciT130I CCWGG 3 cut(s) 23, 378, 407
BfmI CTRYAG 1 cut(s) 270
BfrI CTTAAG 1 cut(s) 44
BisI GCNGC 1 cut(s) 155
BlsI GCNGC 1 cut(s) 156
Bme1390I CCNGG 3 cut(s) 23, 378, 407
BmrFI CCNGG 3 cut(s) 23, 378, 407
BpmI CTGGAG 2 cut(s) 399, 428
BpuEI CTTGAG 1 cut(s) 467
BsaJI CCNNGG 2 cut(s) 376, 396
Bse1I ACTGG 1 cut(s) 262
Bse3DI GCAATG 1 cut(s) 279
BseBI CCWGG 3 cut(s) 23, 378, 407
BseDI CCNNGG 2 cut(s) 376, 396
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 1 cut(s) 428
BseNI ACTGG 1 cut(s) 262
BshFI GGCC 1 cut(s) 312
BsnI GGCC 1 cut(s) 312
Bsp143I GATC 3 cut(s) 103, 318, 402
BspACI CCGC 1 cut(s) 154
BspANI GGCC 1 cut(s) 312
BspCNI CTCAG 1 cut(s) 429
BspPI GGATC 1 cut(s) 397
BspTI CTTAAG 1 cut(s) 44
BsrBI CCGCTC 1 cut(s) 154
BsrDI GCAATG 1 cut(s) 279
BsrI ACTGG 1 cut(s) 262
BssECI CCNNGG 2 cut(s) 376, 396
BssMI GATC 3 cut(s) 103, 318, 402
BssT1I CCWWGG 1 cut(s) 396
Bst2UI CCWGG 3 cut(s) 23, 378, 407
Bst4CI ACNGT 2 cut(s) 123, 291
BstAFI CTTAAG 1 cut(s) 44
BstDEI CTNAG 1 cut(s) 437
BstKTI GATC 3 cut(s) 106, 321, 405
BstMBI GATC 3 cut(s) 103, 318, 402
BstNI CCWGG 3 cut(s) 23, 378, 407
BstSCI CCNGG 3 cut(s) 21, 376, 405
BstSFI CTRYAG 1 cut(s) 270
BstXI CCANNNNNNTGG 1 cut(s) 493
BsuRI GGCC 1 cut(s) 312
Csp6I GTAC 2 cut(s) 13, 261
CviJI RGCY 6 cut(s) 5, 100, 143, 312, 445, 527
CviKI_1 RGCY 6 cut(s) 5, 100, 143, 312, 445, 527
CviQI GTAC 2 cut(s) 13, 261
DdeI CTNAG 1 cut(s) 437
DpnI GATC 3 cut(s) 105, 320, 404
DpnII GATC 3 cut(s) 103, 318, 402
DraI TTTAAA 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 396
Eco57I CTGAAG 1 cut(s) 111
EcoRII CCWGG 3 cut(s) 21, 376, 405
EcoT14I CCWWGG 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 396
FaiI YATR 2 cut(s) 62, 150
FalI AAGNNNNNCTT 2 cut(s) 84, 116
Fnu4HI GCNGC 1 cut(s) 155
Fsp4HI GCNGC 1 cut(s) 155
GluI GCNGC 1 cut(s) 155
GsuI CTGGAG 2 cut(s) 399, 428
HaeIII GGCC 1 cut(s) 312
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 4 cut(s) 113, 167, 350, 372
HphI GGTGA 2 cut(s) 287, 412
Hpy166II GTNNAC 3 cut(s) 15, 117, 499
Hpy188I TCNGA 3 cut(s) 108, 187, 355
Hpy8I GTNNAC 3 cut(s) 15, 117, 499
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 2 cut(s) 50, 302
HpyCH4III ACNGT 2 cut(s) 123, 291
HpyF3I CTNAG 1 cut(s) 437
Kzo9I GATC 3 cut(s) 103, 318, 402
LmnI GCTCC 1 cut(s) 409
MaeIII GTNAC 2 cut(s) 191, 275
MalI GATC 3 cut(s) 105, 320, 404
MbiI CCGCTC 1 cut(s) 154
MboI GATC 3 cut(s) 103, 318, 402
MluCI AATT 3 cut(s) 26, 84, 252
MlyI GAGTC 2 cut(s) 122, 161
MnlI CCTC 1 cut(s) 432
MseI TTAA 6 cut(s) 45, 74, 209, 327, 363, 529
MspCI CTTAAG 1 cut(s) 44
MspR9I CCNGG 3 cut(s) 23, 378, 407
MvaI CCWGG 3 cut(s) 23, 378, 407
NdeII GATC 3 cut(s) 103, 318, 402
NmuCI GTSAC 2 cut(s) 191, 275
PfeI GAWTC 2 cut(s) 350, 372
PfoI TCCNGGA 1 cut(s) 405
PkrI GCNGC 1 cut(s) 156
PleI GAGTC 2 cut(s) 121, 161
PpsI GAGTC 2 cut(s) 121, 161
Psp6I CCWGG 3 cut(s) 21, 376, 405
PspGI CCWGG 3 cut(s) 21, 376, 405
RsaI GTAC 2 cut(s) 14, 262
RsaNI GTAC 2 cut(s) 13, 261
SaqAI TTAA 6 cut(s) 45, 74, 209, 327, 363, 529
SatI GCNGC 1 cut(s) 155
Sau3AI GATC 3 cut(s) 103, 318, 402
SchI GAGTC 2 cut(s) 122, 161
ScrFI CCNGG 3 cut(s) 23, 378, 407
SfcI CTRYAG 1 cut(s) 270
SmlI CTYRAG 2 cut(s) 44, 446
SmoI CTYRAG 2 cut(s) 44, 446
Sse9I AATT 3 cut(s) 26, 84, 252
SsiI CCGC 1 cut(s) 154
SspI AATATT 1 cut(s) 304
StyD4I CCNGG 3 cut(s) 21, 376, 405
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 2 cut(s) 123, 291
TaqII GACCGA 1 cut(s) 80
TasI AATT 3 cut(s) 26, 84, 252
TatI WGTACW 1 cut(s) 12
TauI GCSGC 1 cut(s) 157
TfiI GAWTC 2 cut(s) 350, 372
Tru1I TTAA 6 cut(s) 45, 74, 209, 327, 363, 529
Tru9I TTAA 6 cut(s) 45, 74, 209, 327, 363, 529
TseFI GTSAC 2 cut(s) 191, 275
Tsp45I GTSAC 2 cut(s) 191, 275
TspDTI ATGAA 2 cut(s) 349, 468
Vha464I CTTAAG 1 cut(s) 44
XapI RAATTY 1 cut(s) 26
XcmI CCANNNNNNNNNTGG 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.