Rh4DG097100

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000441
Physical Location & Seq
Forward (+)
14621533 .. 14622159
627 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG097100.1

Sequence Viewer

Length: 627 bp
ATGGCTAAAGAGTACACCCACCTGGAATTTAGGTGCGACCTTCTCAAGTTTGGACGTGTTATGACCGACGAGTTAAGGGCAGATATTACTGAAGTGAAGCTTGATCTGATAGAGTCCACACCGTTCAGGGATTTGTTTAGAGCTTTTTATGAGCGGCAAATAATAGACTCTGCTTGTAGGAAGTCTAATAGTGACATCGTTTCTCTTTTAAAATGCTTTGACAAGGAAAAAAACTCGTTTCAGTTTGGGGAAATTACTGGTACCATATCTGTAGGTGACATTCCAGAACTGTTTGGTTTGAATATTGAAGGTCGTGAGATCAACTTTAACCAGAAGAAGAGAAAAGGGGATTCTGACTTCATTAAAAGACGATTCCCTGGAGTGAAAAGGTTGTCCAAGGTGATCCTGGAGCAACTAATCAAAGATGTATCTAAACTGAGGGGGCTTGAGAATGAATGTGATTTTGTTAGGTTGGTTTGTCTCTATTTTTGTGTAACACTATTTTTCTGCAATAGTGGCAATGACCTTAGCTGGTTTATAGTTCCATACATAGAGGACCTAGATTCAATGTCTCTCTATGCCTGGGCACCCGTAGTGAAGAATTACTTGGACAACTCCCTTTGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

208

Amino Acids

24.21

Weight (kDa)

5.64

Isoelectric Point (pI)

43.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 60 - 207 7.8e-08 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 260
AccB1I GGYRCC 2 cut(s) 260, 586
AccBSI CCGCTC 1 cut(s) 154
AciI CCGC 1 cut(s) 154
AclWI GGATC 1 cut(s) 397
AcsI RAATTY 1 cut(s) 26
AcuI CTGAAG 1 cut(s) 111
AfaI GTAC 2 cut(s) 14, 262
AflIII ACRYGT 1 cut(s) 55
AgsI TTSAA 3 cut(s) 301, 308, 567
AjiI CACGTC 1 cut(s) 56
AjnI CCWGG 4 cut(s) 21, 376, 405, 581
AjuI GAANNNNNNNTTGG 2 cut(s) 590, 622
AluBI AGCT 3 cut(s) 100, 143, 531
AluI AGCT 3 cut(s) 100, 143, 531
Alw26I GTCTC 2 cut(s) 485, 576
AlwI GGATC 1 cut(s) 397
ApoI RAATTY 1 cut(s) 26
Asp718I GGTACC 1 cut(s) 260
AspS9I GGNCC 1 cut(s) 556
AsuHPI GGTGA 2 cut(s) 287, 412
AvaII GGWCC 1 cut(s) 556
BaeGI GKGCMC 1 cut(s) 589
BanI GGYRCC 2 cut(s) 260, 586
BciT130I CCWGG 4 cut(s) 23, 378, 407, 583
BcoDI GTCTC 2 cut(s) 485, 576
BfaI CTAG 1 cut(s) 560
BfmI CTRYAG 1 cut(s) 270
BisI GCNGC 1 cut(s) 155
BlsI GCNGC 1 cut(s) 156
Bme1390I CCNGG 4 cut(s) 23, 378, 407, 583
Bme18I GGWCC 1 cut(s) 556
BmgBI CACGTC 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 556
BmiI GGNNCC 2 cut(s) 262, 588
BmrFI CCNGG 4 cut(s) 23, 378, 407, 583
BpmI CTGGAG 2 cut(s) 399, 428
Bpu10I CCTNAGC 1 cut(s) 527
BpuEI CTTGAG 2 cut(s) 29, 467
BsaJI CCNNGG 3 cut(s) 376, 396, 582
Bse1I ACTGG 1 cut(s) 262
Bse3DI GCAATG 1 cut(s) 526
BseBI CCWGG 4 cut(s) 23, 378, 407, 583
BseDI CCNNGG 3 cut(s) 376, 396, 582
BseMI GCAATG 1 cut(s) 526
BseMII CTCAG 1 cut(s) 428
BseNI ACTGG 1 cut(s) 262
BseSI GKGCMC 1 cut(s) 589
BshNI GGYRCC 2 cut(s) 260, 586
BsmAI GTCTC 2 cut(s) 485, 576
Bsp1286I GDGCHC 1 cut(s) 589
Bsp143I GATC 3 cut(s) 103, 318, 402
BspACI CCGC 1 cut(s) 154
BspCNI CTCAG 1 cut(s) 429
BspLI GGNNCC 2 cut(s) 262, 588
BspPI GGATC 1 cut(s) 397
BspT107I GGYRCC 2 cut(s) 260, 586
BsrBI CCGCTC 1 cut(s) 154
BsrDI GCAATG 1 cut(s) 526
BsrI ACTGG 1 cut(s) 262
BssECI CCNNGG 3 cut(s) 376, 396, 582
BssMI GATC 3 cut(s) 103, 318, 402
BssT1I CCWWGG 1 cut(s) 396
Bst2UI CCWGG 4 cut(s) 23, 378, 407, 583
Bst4CI ACNGT 2 cut(s) 123, 291
Bst6I CTCTTC 1 cut(s) 332
BstDEI CTNAG 2 cut(s) 437, 527
BstKTI GATC 3 cut(s) 106, 321, 405
BstMAI GTCTC 2 cut(s) 485, 576
BstMBI GATC 3 cut(s) 103, 318, 402
BstMWI GCNNNNNNNGC 1 cut(s) 516
BstNI CCWGG 4 cut(s) 23, 378, 407, 583
BstSCI CCNGG 4 cut(s) 21, 376, 405, 581
BstSFI CTRYAG 1 cut(s) 270
BstSLI GKGCMC 1 cut(s) 589
BtrI CACGTC 1 cut(s) 56
Cfr13I GGNCC 1 cut(s) 556
Csp6I GTAC 2 cut(s) 13, 261
CviJI RGCY 5 cut(s) 5, 100, 143, 445, 531
CviKI_1 RGCY 5 cut(s) 5, 100, 143, 445, 531
CviQI GTAC 2 cut(s) 13, 261
DdeI CTNAG 2 cut(s) 437, 527
DpnI GATC 3 cut(s) 105, 320, 404
DpnII GATC 3 cut(s) 103, 318, 402
DraI TTTAAA 1 cut(s) 210
Eam1104I CTCTTC 1 cut(s) 332
EarI CTCTTC 1 cut(s) 332
Eco130I CCWWGG 1 cut(s) 396
Eco47I GGWCC 1 cut(s) 556
Eco57I CTGAAG 1 cut(s) 111
EcoO109I RGGNCCY 1 cut(s) 556
EcoRII CCWGG 4 cut(s) 21, 376, 405, 581
EcoT14I CCWWGG 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 396
FaiI YATR 7 cut(s) 62, 150, 266, 539, 547, 551, 579
FalI AAGNNNNNCTT 4 cut(s) 84, 116, 590, 622
Fnu4HI GCNGC 1 cut(s) 155
Fsp4HI GCNGC 1 cut(s) 155
FspBI CTAG 1 cut(s) 560
GluI GCNGC 1 cut(s) 155
GsuI CTGGAG 2 cut(s) 399, 428
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 5 cut(s) 113, 167, 350, 372, 563
HphI GGTGA 2 cut(s) 287, 412
Hpy166II GTNNAC 2 cut(s) 15, 117
Hpy188I TCNGA 2 cut(s) 108, 355
Hpy188III TCNNGA 2 cut(s) 284, 314
Hpy8I GTNNAC 2 cut(s) 15, 117
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 2 cut(s) 50, 302
HpyCH4III ACNGT 2 cut(s) 123, 291
HpyCH4IV ACGT 1 cut(s) 55
HpyCH4V TGCA 1 cut(s) 510
HpyF10VI GCNNNNNNNGC 1 cut(s) 516
HpyF3I CTNAG 2 cut(s) 437, 527
HpySE526I ACGT 1 cut(s) 55
KpnI GGTACC 1 cut(s) 264
Kzo9I GATC 3 cut(s) 103, 318, 402
LmnI GCTCC 1 cut(s) 409
MaeI CTAG 1 cut(s) 560
MaeII ACGT 1 cut(s) 55
MaeIII GTNAC 3 cut(s) 191, 275, 493
MalI GATC 3 cut(s) 105, 320, 404
MbiI CCGCTC 1 cut(s) 154
MboI GATC 3 cut(s) 103, 318, 402
MboII GAAGA 3 cut(s) 346, 349, 610
MhlI GDGCHC 1 cut(s) 589
MluCI AATT 3 cut(s) 26, 252, 601
MlyI GAGTC 2 cut(s) 122, 161
MnlI CCTC 2 cut(s) 432, 547
MseI TTAA 4 cut(s) 74, 209, 327, 363
MspR9I CCNGG 4 cut(s) 23, 378, 407, 583
MvaI CCWGG 4 cut(s) 23, 378, 407, 583
MwoI GCNNNNNNNGC 1 cut(s) 516
NdeII GATC 3 cut(s) 103, 318, 402
NlaIV GGNNCC 2 cut(s) 262, 588
NmuCI GTSAC 2 cut(s) 191, 275
PfeI GAWTC 3 cut(s) 350, 372, 563
PfoI TCCNGGA 1 cut(s) 405
PkrI GCNGC 1 cut(s) 156
PleI GAGTC 2 cut(s) 121, 161
PpsI GAGTC 2 cut(s) 121, 161
PpuMI RGGWCCY 1 cut(s) 556
Psp5II RGGWCCY 1 cut(s) 556
Psp6I CCWGG 4 cut(s) 21, 376, 405, 581
PspGI CCWGG 4 cut(s) 21, 376, 405, 581
PspN4I GGNNCC 2 cut(s) 262, 588
PspPI GGNCC 1 cut(s) 556
PspPPI RGGWCCY 1 cut(s) 556
RsaI GTAC 2 cut(s) 14, 262
RsaNI GTAC 2 cut(s) 13, 261
SaqAI TTAA 4 cut(s) 74, 209, 327, 363
SatI GCNGC 1 cut(s) 155
Sau3AI GATC 3 cut(s) 103, 318, 402
Sau96I GGNCC 1 cut(s) 556
SchI GAGTC 2 cut(s) 122, 161
ScrFI CCNGG 4 cut(s) 23, 378, 407, 583
SduI GDGCHC 1 cut(s) 589
SfcI CTRYAG 1 cut(s) 270
SinI GGWCC 1 cut(s) 556
SmlI CTYRAG 2 cut(s) 44, 446
SmoI CTYRAG 2 cut(s) 44, 446
Sse9I AATT 3 cut(s) 26, 252, 601
SsiI CCGC 1 cut(s) 154
SspI AATATT 1 cut(s) 304
SspMI CTAG 1 cut(s) 560
StyD4I CCNGG 4 cut(s) 21, 376, 405, 581
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 2 cut(s) 123, 291
TaiI ACGT 1 cut(s) 58
TaqII GACCGA 1 cut(s) 80
TasI AATT 3 cut(s) 26, 252, 601
TatI WGTACW 1 cut(s) 12
TauI GCSGC 1 cut(s) 157
TfiI GAWTC 3 cut(s) 350, 372, 563
Tru1I TTAA 4 cut(s) 74, 209, 327, 363
Tru9I TTAA 4 cut(s) 74, 209, 327, 363
TseFI GTSAC 2 cut(s) 191, 275
Tsp45I GTSAC 2 cut(s) 191, 275
TspDTI ATGAA 2 cut(s) 349, 468
VpaK11BI GGWCC 1 cut(s) 556
XapI RAATTY 1 cut(s) 26
XcmI CCANNNNNNNNNTGG 1 cut(s) 403
XspI CTAG 1 cut(s) 560
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.