Rh6CG118400

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000441
Physical Location & Seq
Forward (+)
13824772 .. 13825634
863 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG118400.1

Sequence Viewer

Length: 585 bp
ATGGGATATGGTGAAAGGGGGGATAAAAGAGCTATTGTTGCAGCTTATCTGGAGCATATCTTGAAAAATATTTGGGACAAGGACTTTATATGTATCCCAATTGTTCATGAGAAAGAAAATCACTTCACCCTGTTGGTATTGAACACAAAAGTTGGTTGGTGGGAACATTACAACTCATTACACCCAAAGCGAGCAACAACCCTAGATCCGTGCTTTGTGGAGGCAGCAAAATTGCATGCGGAAATGACAAAGCATTTTACATTTCTGAAAACTCATCGTAAAGGTATAATTAATAGTGGGCTGAGGGGAGGAGAAGTGAATTTATTCCAATACAAGCTCTCAAACGAAGACCGGGACTTGCTTATCTGGTTGGGAGGTAACTCTGTTGAACATTTTCCTATCAAACCTAACAAGGAATGTCCACAACAAGATTCTGGAAGTGTGGATTGTGCGATTGGAGTGATGTACATTGTCAAGAAATTATCAAAAGGAAAAGTGGTAGACTCTACCTTTACCAAAGGTGTAATGCCGAATATGAGGGCACATATTTTAGAAAGATTTTTAAATATGCCGAATGGAGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

194

Amino Acids

22.12

Weight (kDa)

8.99

Isoelectric Point (pI)

25.73

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C48 PF02902 22 - 182 7.6e-06 Ulp1 protease family, C-terminal catalytic domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 501
AciI CCGC 1 cut(s) 239
AclWI GGATC 1 cut(s) 200
AcsI RAATTY 1 cut(s) 319
AfaI GTAC 1 cut(s) 467
AgsI TTSAA 3 cut(s) 64, 142, 389
AluBI AGCT 3 cut(s) 32, 44, 337
AluI AGCT 3 cut(s) 32, 44, 337
AlwI GGATC 1 cut(s) 200
ApeKI GCWGC 2 cut(s) 41, 224
ApoI RAATTY 1 cut(s) 319
AseI ATTAAT 1 cut(s) 291
Asp700I GAANNNNTTC 2 cut(s) 323, 393
AsuC2I CCSGG 1 cut(s) 353
AsuHPI GGTGA 2 cut(s) 23, 118
BaeGI GKGCMC 1 cut(s) 544
BbsI GAAGAC 1 cut(s) 354
BbvCI CCTCAGC 1 cut(s) 302
BbvI GCAGC 2 cut(s) 53, 236
BciVI GTATCC 1 cut(s) 104
BcnI CCSGG 1 cut(s) 353
BfaI CTAG 2 cut(s) 203, 583
BfuI GTATCC 1 cut(s) 104
BisI GCNGC 2 cut(s) 42, 225
BlsI GCNGC 2 cut(s) 43, 226
Bme1390I CCNGG 1 cut(s) 353
BmiI GGNNCC 1 cut(s) 580
BmrFI CCNGG 1 cut(s) 353
BpiI GAAGAC 1 cut(s) 354
BpmI CTGGAG 1 cut(s) 71
Bpu10I CCTNAGC 1 cut(s) 302
BpuMI CCSGG 1 cut(s) 353
BsaXI ACNNNNNCTCC 2 cut(s) 300, 330
BseMII CTCAG 1 cut(s) 293
BseRI GAGGAG 1 cut(s) 324
BseSI GKGCMC 1 cut(s) 544
BseXI GCAGC 2 cut(s) 53, 236
BsiSI CCGG 1 cut(s) 352
BslFI GGGAC 2 cut(s) 89, 368
BsmFI GGGAC 2 cut(s) 89, 368
Bsp1286I GDGCHC 1 cut(s) 544
Bsp1407I TGTACA 1 cut(s) 465
Bsp143I GATC 1 cut(s) 205
BspACI CCGC 1 cut(s) 239
BspCNI CTCAG 1 cut(s) 294
BspHI TCATGA 1 cut(s) 106
BspLI GGNNCC 1 cut(s) 580
BspPI GGATC 1 cut(s) 200
BsrGI TGTACA 1 cut(s) 465
BssMI GATC 1 cut(s) 205
BstAUI TGTACA 1 cut(s) 465
BstC8I GCNNGC 2 cut(s) 192, 237
BstDEI CTNAG 1 cut(s) 302
BstKTI GATC 1 cut(s) 208
BstMBI GATC 1 cut(s) 205
BstMWI GCNNNNNNNGC 1 cut(s) 38
BstNSI RCATGY 1 cut(s) 239
BstSCI CCNGG 1 cut(s) 351
BstSLI GKGCMC 1 cut(s) 544
BstV1I GCAGC 2 cut(s) 53, 236
BstV2I GAAGAC 1 cut(s) 354
BstX2I RGATCY 1 cut(s) 205
BstYI RGATCY 1 cut(s) 205
BsuI GTATCC 1 cut(s) 104
Cac8I GCNNGC 2 cut(s) 192, 237
CciI TCATGA 1 cut(s) 106
Csp6I GTAC 1 cut(s) 466
CviAII CATG 2 cut(s) 107, 236
CviJI RGCY 5 cut(s) 32, 44, 301, 337, 581
CviKI_1 RGCY 5 cut(s) 32, 44, 301, 337, 581
CviQI GTAC 1 cut(s) 466
DdeI CTNAG 1 cut(s) 302
DpnI GATC 1 cut(s) 207
DpnII GATC 1 cut(s) 205
DraI TTTAAA 1 cut(s) 564
FaeI CATG 2 cut(s) 110, 239
FaqI GGGAC 2 cut(s) 89, 368
FatI CATG 2 cut(s) 106, 235
FblI GTMKAC 1 cut(s) 501
Fnu4HI GCNGC 2 cut(s) 42, 225
Fsp4HI GCNGC 2 cut(s) 42, 225
FspBI CTAG 2 cut(s) 203, 583
GluI GCNGC 2 cut(s) 42, 225
GsuI CTGGAG 1 cut(s) 71
HapII CCGG 1 cut(s) 352
Hin1II CATG 2 cut(s) 110, 239
HinfI GANTC 2 cut(s) 431, 503
HpaII CCGG 1 cut(s) 352
HphI GGTGA 2 cut(s) 23, 118
Hpy166II GTNNAC 2 cut(s) 422, 502
Hpy188I TCNGA 1 cut(s) 267
Hpy188III TCNNGA 5 cut(s) 50, 61, 107, 435, 475
Hpy8I GTNNAC 2 cut(s) 422, 502
HpyCH4V TGCA 2 cut(s) 41, 235
HpyF10VI GCNNNNNNNGC 1 cut(s) 38
HpyF3I CTNAG 1 cut(s) 302
Hsp92II CATG 2 cut(s) 110, 239
Kzo9I GATC 1 cut(s) 205
LmnI GCTCC 2 cut(s) 52, 578
LpnPI CCDG 5 cut(s) 35, 143, 352, 365, 420
Lsp1109I GCAGC 2 cut(s) 53, 236
MaeI CTAG 2 cut(s) 203, 583
MaeIII GTNAC 1 cut(s) 377
MalI GATC 1 cut(s) 207
MboI GATC 1 cut(s) 205
MboII GAAGA 1 cut(s) 359
MfeI CAATTG 1 cut(s) 99
MflI RGATCY 1 cut(s) 205
MhlI GDGCHC 1 cut(s) 544
MluCI AATT 5 cut(s) 99, 230, 288, 319, 479
MlyI GAGTC 1 cut(s) 497
MnlI CCTC 5 cut(s) 214, 297, 302, 368, 531
MroXI GAANNNNTTC 2 cut(s) 323, 393
MseI TTAA 2 cut(s) 291, 563
MspI CCGG 1 cut(s) 352
MspR9I CCNGG 1 cut(s) 353
MunI CAATTG 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 38
NciI CCSGG 1 cut(s) 353
NdeII GATC 1 cut(s) 205
NlaIII CATG 2 cut(s) 110, 239
NlaIV GGNNCC 1 cut(s) 580
NspI RCATGY 1 cut(s) 239
PaeI GCATGC 1 cut(s) 239
PagI TCATGA 1 cut(s) 106
PdmI GAANNNNTTC 2 cut(s) 323, 393
PfeI GAWTC 1 cut(s) 431
PkrI GCNGC 2 cut(s) 43, 226
PleI GAGTC 1 cut(s) 497
PpsI GAGTC 1 cut(s) 497
PshBI ATTAAT 1 cut(s) 291
PspN4I GGNNCC 1 cut(s) 580
PsuI RGATCY 1 cut(s) 205
RsaI GTAC 1 cut(s) 467
RsaNI GTAC 1 cut(s) 466
SaqAI TTAA 2 cut(s) 291, 563
SatI GCNGC 2 cut(s) 42, 225
Sau3AI GATC 1 cut(s) 205
SchI GAGTC 1 cut(s) 497
ScrFI CCNGG 1 cut(s) 353
SduI GDGCHC 1 cut(s) 544
SetI ASST 8 cut(s) 34, 46, 286, 339, 379, 409, 512, 523
SphI GCATGC 1 cut(s) 239
Sse9I AATT 5 cut(s) 99, 230, 288, 319, 479
SsiI CCGC 1 cut(s) 239
SspI AATATT 1 cut(s) 70
SspMI CTAG 2 cut(s) 203, 583
StyD4I CCNGG 1 cut(s) 351
TasI AATT 5 cut(s) 99, 230, 288, 319, 479
TatI WGTACW 1 cut(s) 465
TfiI GAWTC 1 cut(s) 431
Tru1I TTAA 2 cut(s) 291, 563
Tru9I TTAA 2 cut(s) 291, 563
TseI GCWGC 2 cut(s) 41, 224
TspDTI ATGAA 1 cut(s) 95
TspGWI ACGGA 1 cut(s) 198
VspI ATTAAT 1 cut(s) 291
XapI RAATTY 1 cut(s) 319
XceI RCATGY 1 cut(s) 239
XmiI GTMKAC 1 cut(s) 501
XmnI GAANNNNTTC 2 cut(s) 323, 393
XspI CTAG 2 cut(s) 203, 583
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.