Rh5AG183100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000441
Physical Location & Seq
Reverse (-)
20830832 .. 20831539
708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG183100.1

Sequence Viewer

Length: 414 bp
ATGGAGACAAGGGTTCAAGAGTTGGCTGATTTGCTTGAAATTGAACAAGCTCATAATAAGCGCCTTCATAGTGAAAATGAGAGACTGCAGACAGAGATTAATATGCTCCGTCCGAGTAACAAAGTGGTTGAGAATGAGAATCAGATTTCAATGAACCTGAGGTCGAGGTCTAAATGCAAAAAACCCCTTATTTTAGCCGACTTCATCACTGAGAGGACCAAGAAAGGAAAAGCAAAAGCTGAAATTATTAAGAAGGATGATGATGATTTTGTCGTACAATCGCCTTTCAAGAAAAAGAAGACACCAACAGTAGATCAAAATATAGGTGTGAGGAGACTACGGGTTGGTATGTGCATAACGATTCCTGATGCAGAGAGGCTTAAGGTTTATTTGGCGAAAAGAGAGAACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

137

Amino Acids

15.97

Weight (kDa)

9.69

Isoelectric Point (pI)

57.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 276
AflII CTTAAG 1 cut(s) 380
AgsI TTSAA 5 cut(s) 17, 38, 44, 150, 289
AluBI AGCT 2 cut(s) 50, 239
AluI AGCT 2 cut(s) 50, 239
Alw26I GTCTC 2 cut(s) 76, 328
AseI ATTAAT 1 cut(s) 99
AspLEI GCGC 1 cut(s) 63
AspS9I GGNCC 1 cut(s) 216
AvaII GGWCC 1 cut(s) 216
AxyI CCTNAGG 1 cut(s) 158
BbsI GAAGAC 1 cut(s) 305
BcoDI GTCTC 2 cut(s) 76, 328
BfmI CTRYAG 1 cut(s) 86
BfoI RGCGCY 1 cut(s) 64
BfrI CTTAAG 1 cut(s) 380
Bme18I GGWCC 1 cut(s) 216
BmgT120I GGNCC 1 cut(s) 216
BmsI GCATC 1 cut(s) 358
BpiI GAAGAC 1 cut(s) 305
Bse21I CCTNAGG 1 cut(s) 158
BseGI GGATG 1 cut(s) 262
BseMII CTCAG 2 cut(s) 149, 201
BseRI GAGGAG 1 cut(s) 346
BsmAI GTCTC 2 cut(s) 76, 328
Bsp143I GATC 1 cut(s) 313
BspCNI CTCAG 2 cut(s) 150, 202
BspMAI CTGCAG 1 cut(s) 90
BspTI CTTAAG 1 cut(s) 380
BssMI GATC 1 cut(s) 313
Bst4CI ACNGT 1 cut(s) 310
BstAFI CTTAAG 1 cut(s) 380
BstDEI CTNAG 2 cut(s) 158, 210
BstF5I GGATG 1 cut(s) 262
BstH2I RGCGCY 1 cut(s) 64
BstHHI GCGC 1 cut(s) 63
BstKTI GATC 1 cut(s) 316
BstMAI GTCTC 2 cut(s) 76, 328
BstMBI GATC 1 cut(s) 313
BstSFI CTRYAG 1 cut(s) 86
BstV2I GAAGAC 1 cut(s) 305
Bsu36I CCTNAGG 1 cut(s) 158
BtsCI GGATG 1 cut(s) 262
BtsIMutI CAGTG 1 cut(s) 207
CfoI GCGC 1 cut(s) 63
Cfr13I GGNCC 1 cut(s) 216
Csp6I GTAC 1 cut(s) 275
CviJI RGCY 5 cut(s) 26, 50, 197, 239, 379
CviKI_1 RGCY 5 cut(s) 26, 50, 197, 239, 379
CviQI GTAC 1 cut(s) 275
DdeI CTNAG 2 cut(s) 158, 210
DpnI GATC 1 cut(s) 315
DpnII GATC 1 cut(s) 313
Eco47I GGWCC 1 cut(s) 216
Eco81I CCTNAGG 1 cut(s) 158
FaiI YATR 6 cut(s) 54, 69, 104, 323, 350, 356
FokI GGATG 1 cut(s) 269
GlaI GCGC 1 cut(s) 62
HaeII RGCGCY 1 cut(s) 64
HhaI GCGC 1 cut(s) 63
Hin6I GCGC 1 cut(s) 61
HinP1I GCGC 1 cut(s) 61
HinfI GANTC 2 cut(s) 139, 361
Hpy188I TCNGA 2 cut(s) 114, 144
Hpy188III TCNNGA 3 cut(s) 17, 289, 365
HpyAV CCTTC 2 cut(s) 74, 247
HpyCH4III ACNGT 1 cut(s) 310
HpyCH4V TGCA 4 cut(s) 88, 177, 354, 371
HpyF3I CTNAG 2 cut(s) 158, 210
HspAI GCGC 1 cut(s) 61
Kzo9I GATC 1 cut(s) 313
LmnI GCTCC 1 cut(s) 111
LpnPI CCDG 2 cut(s) 170, 378
LweI GCATC 1 cut(s) 358
MaeIII GTNAC 1 cut(s) 116
MalI GATC 1 cut(s) 315
MboI GATC 1 cut(s) 313
MboII GAAGA 1 cut(s) 310
MluCI AATT 2 cut(s) 39, 243
MnlI CCTC 5 cut(s) 153, 159, 207, 324, 369
MseI TTAA 3 cut(s) 99, 249, 381
MspCI CTTAAG 1 cut(s) 380
NdeII GATC 1 cut(s) 313
PfeI GAWTC 2 cut(s) 139, 361
PshBI ATTAAT 1 cut(s) 99
PspPI GGNCC 1 cut(s) 216
PstI CTGCAG 1 cut(s) 90
RsaI GTAC 1 cut(s) 276
RsaNI GTAC 1 cut(s) 275
SaqAI TTAA 3 cut(s) 99, 249, 381
Sau3AI GATC 1 cut(s) 313
Sau96I GGNCC 1 cut(s) 216
SetI ASST 7 cut(s) 52, 159, 164, 170, 241, 328, 387
SfaNI GCATC 1 cut(s) 358
SfcI CTRYAG 1 cut(s) 86
SinI GGWCC 1 cut(s) 216
SmlI CTYRAG 1 cut(s) 380
SmoI CTYRAG 1 cut(s) 380
Sse9I AATT 2 cut(s) 39, 243
TaaI ACNGT 1 cut(s) 310
TaqI TCGA 1 cut(s) 164
TasI AATT 2 cut(s) 39, 243
TfiI GAWTC 2 cut(s) 139, 361
Tru1I TTAA 3 cut(s) 99, 249, 381
Tru9I TTAA 3 cut(s) 99, 249, 381
TscAI CASTG 1 cut(s) 214
TspDTI ATGAA 3 cut(s) 56, 167, 193
TspGWI ACGGA 1 cut(s) 98
TspRI CASTG 1 cut(s) 214
Vha464I CTTAAG 1 cut(s) 380
VpaK11BI GGWCC 1 cut(s) 216
VspI ATTAAT 1 cut(s) 99
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.