Rw7G017450

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000441
Physical Location & Seq
Forward (+)
18250112 .. 18250889
778 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G017450.1

Sequence Viewer

Length: 600 bp
ATGAAGGTTGTGGATATACATGAAATCAAGAGTGTGCTAGCTATTACCTGTACTGAAGAAGGGGGCTCTAAAGAGAAGTATGTAGATGATTTTGAACCTGGTAAGATGTTTCAGTTGTTACCAACTCAATTTTACATAGACGATGGTCAACTAGGGCCTTCAAGCATAGAGGTGCGTAGTAAAGATATGGAGTCAAGGGTTCAAGAGTTGGCTGATTTGCTTGAAATTAAACAAGCTCATAATAAGCGCCTTCGTAGTGAAAATGAGAGACTGCAGACAGAGATTAATATGCTCCGTCCGAGTAACAAAGTGGTTGAGAATGAGAATCAGATTTCAATGAACCTGAGGTCGAGGTCTAAATGCAAAAAACCCCTTATCTTAGCCGACTTCATCACTGAGAGGACCAAGAAAGGAAAACCAAAAGCTGAAATTATTAAGAAGGACGATGATGATTTTGTCGTACAATCACCTTCCAAGAAAAAGAAGATGCCAACAGTAGATCAAAACATAGGTGTGAGGAGACTATGGGTTGGTAAGTGCATGAAGATTCCTGATGCAGAGAGGCTTAAGGCTTATTTGGCGAAAAGAGAGAACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

199

Amino Acids

22.96

Weight (kDa)

9.3

Isoelectric Point (pI)

65.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 75
AfaI GTAC 2 cut(s) 52, 462
AflII CTTAAG 1 cut(s) 566
AgsI TTSAA 5 cut(s) 95, 162, 203, 224, 336
AjnI CCWGG 1 cut(s) 97
AluBI AGCT 3 cut(s) 41, 236, 425
AluI AGCT 3 cut(s) 41, 236, 425
Alw26I GTCTC 2 cut(s) 262, 514
AoxI GGCC 1 cut(s) 155
AseI ATTAAT 1 cut(s) 285
AspLEI GCGC 1 cut(s) 249
AspS9I GGNCC 2 cut(s) 155, 402
AsuHPI GGTGA 1 cut(s) 459
AsuNHI GCTAGC 1 cut(s) 37
AvaII GGWCC 1 cut(s) 402
AxyI CCTNAGG 1 cut(s) 344
BanII GRGCYC 1 cut(s) 68
BccI CCATC 1 cut(s) 137
BciT130I CCWGG 1 cut(s) 99
BcoDI GTCTC 2 cut(s) 262, 514
BfaI CTAG 2 cut(s) 38, 152
BfmI CTRYAG 1 cut(s) 272
BfoI RGCGCY 1 cut(s) 250
BfrI CTTAAG 1 cut(s) 566
Bme1390I CCNGG 1 cut(s) 99
Bme18I GGWCC 1 cut(s) 402
BmgT120I GGNCC 2 cut(s) 155, 402
BmrFI CCNGG 1 cut(s) 99
BmsI GCATC 2 cut(s) 477, 544
BmtI GCTAGC 1 cut(s) 41
BoxI GACNNNNGTC 1 cut(s) 144
Bse21I CCTNAGG 1 cut(s) 344
BseBI CCWGG 1 cut(s) 99
BseMII CTCAG 2 cut(s) 335, 387
BseRI GAGGAG 1 cut(s) 532
BshFI GGCC 1 cut(s) 157
BsmAI GTCTC 2 cut(s) 262, 514
BsnI GGCC 1 cut(s) 157
Bsp1286I GDGCHC 1 cut(s) 68
Bsp143I GATC 1 cut(s) 499
BspANI GGCC 1 cut(s) 157
BspCNI CTCAG 2 cut(s) 336, 388
BspMAI CTGCAG 1 cut(s) 276
BspOI GCTAGC 1 cut(s) 41
BspTI CTTAAG 1 cut(s) 566
BssMI GATC 1 cut(s) 499
Bst2UI CCWGG 1 cut(s) 99
Bst4CI ACNGT 1 cut(s) 496
BstAFI CTTAAG 1 cut(s) 566
BstC8I GCNNGC 1 cut(s) 39
BstDEI CTNAG 3 cut(s) 344, 379, 396
BstH2I RGCGCY 1 cut(s) 250
BstHHI GCGC 1 cut(s) 249
BstKTI GATC 1 cut(s) 502
BstMAI GTCTC 2 cut(s) 262, 514
BstMBI GATC 1 cut(s) 499
BstMWI GCNNNNNNNGC 1 cut(s) 578
BstNI CCWGG 1 cut(s) 99
BstPAI GACNNNNGTC 1 cut(s) 144
BstSCI CCNGG 1 cut(s) 97
BstSFI CTRYAG 1 cut(s) 272
Bsu36I CCTNAGG 1 cut(s) 344
BsuRI GGCC 1 cut(s) 157
BtsIMutI CAGTG 1 cut(s) 393
Cac8I GCNNGC 1 cut(s) 39
CfoI GCGC 1 cut(s) 249
Cfr13I GGNCC 2 cut(s) 155, 402
CsiI ACCWGGT 1 cut(s) 97
Csp6I GTAC 2 cut(s) 51, 461
CviAII CATG 2 cut(s) 20, 541
CviJI RGCY 9 cut(s) 41, 66, 157, 212, 236, 383, 425, 565, 572
CviKI_1 RGCY 9 cut(s) 41, 66, 157, 212, 236, 383, 425, 565, 572
CviQI GTAC 2 cut(s) 51, 461
DdeI CTNAG 3 cut(s) 344, 379, 396
DpnI GATC 1 cut(s) 501
DpnII GATC 1 cut(s) 499
Eco24I GRGCYC 1 cut(s) 68
Eco47I GGWCC 1 cut(s) 402
Eco57I CTGAAG 1 cut(s) 75
Eco81I CCTNAGG 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 155
EcoRII CCWGG 1 cut(s) 97
EcoT38I GRGCYC 1 cut(s) 68
FaeI CATG 2 cut(s) 23, 544
FatI CATG 2 cut(s) 19, 540
FriOI GRGCYC 1 cut(s) 68
FspBI CTAG 2 cut(s) 38, 152
GlaI GCGC 1 cut(s) 248
HaeII RGCGCY 1 cut(s) 250
HaeIII GGCC 1 cut(s) 157
HhaI GCGC 1 cut(s) 249
Hin1II CATG 2 cut(s) 23, 544
Hin6I GCGC 1 cut(s) 247
HinP1I GCGC 1 cut(s) 247
HincII GTYRAC 1 cut(s) 149
HindII GTYRAC 1 cut(s) 149
HinfI GANTC 3 cut(s) 191, 325, 547
HphI GGTGA 1 cut(s) 459
Hpy166II GTNNAC 1 cut(s) 149
Hpy188I TCNGA 2 cut(s) 300, 330
Hpy188III TCNNGA 3 cut(s) 28, 203, 551
Hpy8I GTNNAC 1 cut(s) 149
HpyAV CCTTC 5 cut(s) 53, 168, 260, 433, 480
HpyCH4III ACNGT 1 cut(s) 496
HpyCH4V TGCA 4 cut(s) 274, 363, 540, 557
HpyF10VI GCNNNNNNNGC 1 cut(s) 578
HpyF3I CTNAG 3 cut(s) 344, 379, 396
Hsp92II CATG 2 cut(s) 23, 544
HspAI GCGC 1 cut(s) 247
Kzo9I GATC 1 cut(s) 499
LmnI GCTCC 1 cut(s) 297
LpnPI CCDG 5 cut(s) 61, 84, 111, 356, 564
LweI GCATC 2 cut(s) 477, 544
MabI ACCWGGT 1 cut(s) 97
MaeI CTAG 2 cut(s) 38, 152
MaeIII GTNAC 2 cut(s) 117, 302
MalI GATC 1 cut(s) 501
MboI GATC 1 cut(s) 499
MboII GAAGA 3 cut(s) 68, 496, 556
MhlI GDGCHC 1 cut(s) 68
MluCI AATT 3 cut(s) 128, 225, 429
MlyI GAGTC 1 cut(s) 200
MnlI CCTC 6 cut(s) 163, 339, 345, 393, 510, 555
MseI TTAA 4 cut(s) 228, 285, 435, 567
MslI CAYNNNNRTG 2 cut(s) 170, 512
MspCI CTTAAG 1 cut(s) 566
MspR9I CCNGG 1 cut(s) 99
MvaI CCWGG 1 cut(s) 99
MwoI GCNNNNNNNGC 1 cut(s) 578
NdeII GATC 1 cut(s) 499
NheI GCTAGC 1 cut(s) 37
NlaIII CATG 2 cut(s) 23, 544
PfeI GAWTC 2 cut(s) 325, 547
PleI GAGTC 1 cut(s) 199
PpsI GAGTC 1 cut(s) 199
PshAI GACNNNNGTC 1 cut(s) 144
PshBI ATTAAT 1 cut(s) 285
Psp6I CCWGG 1 cut(s) 97
PspGI CCWGG 1 cut(s) 97
PspPI GGNCC 2 cut(s) 155, 402
PstI CTGCAG 1 cut(s) 276
RsaI GTAC 2 cut(s) 52, 462
RsaNI GTAC 2 cut(s) 51, 461
RseI CAYNNNNRTG 2 cut(s) 170, 512
SaqAI TTAA 4 cut(s) 228, 285, 435, 567
Sau3AI GATC 1 cut(s) 499
Sau96I GGNCC 2 cut(s) 155, 402
SchI GAGTC 1 cut(s) 200
ScrFI CCNGG 1 cut(s) 99
SduI GDGCHC 1 cut(s) 68
SexAI ACCWGGT 1 cut(s) 97
SfaNI GCATC 2 cut(s) 477, 544
SfcI CTRYAG 1 cut(s) 272
SinI GGWCC 1 cut(s) 402
SmiMI CAYNNNNRTG 2 cut(s) 170, 512
SmlI CTYRAG 1 cut(s) 566
SmoI CTYRAG 1 cut(s) 566
Sse9I AATT 3 cut(s) 128, 225, 429
SspMI CTAG 2 cut(s) 38, 152
StyD4I CCNGG 1 cut(s) 97
TaaI ACNGT 1 cut(s) 496
TaqI TCGA 1 cut(s) 350
TasI AATT 3 cut(s) 128, 225, 429
TatI WGTACW 1 cut(s) 50
TfiI GAWTC 2 cut(s) 325, 547
Tru1I TTAA 4 cut(s) 228, 285, 435, 567
Tru9I TTAA 4 cut(s) 228, 285, 435, 567
TscAI CASTG 1 cut(s) 400
TspDTI ATGAA 5 cut(s) 17, 36, 353, 379, 557
TspGWI ACGGA 1 cut(s) 284
TspRI CASTG 1 cut(s) 400
Vha464I CTTAAG 1 cut(s) 566
VpaK11BI GGWCC 1 cut(s) 402
VspI ATTAAT 1 cut(s) 285
XspI CTAG 2 cut(s) 38, 152
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.