Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0000441

Physical Location & Seq

Genomic Coordinates Reverse (-)

859223 .. 860323

Gene Structure 1101 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1009100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGGTTACCCCGCTCATGTTTATTGTCCGCTCAAAAACAAGTGAATTAGGTATAGCTTCGGATGAAAGTCTTGAAGTAATTAAACCTAAATGCATCATTCTTTATTCTCTGGTCACAGTTTGTGGATACAAGGCGGTTGTCAGGTTCTTTCCGCATCAAGTCTCGGACTTGGAACTTGCTGTGTCTCTCTTGGAGAAGTGCCATCACACAAAGTCAGTGTCATCACTGCGTCAGGAAAGTACGGGAGAGATGGAAGCTAAATGTGTGATGCTTTTGTGGCTGTCTATTCTCGTGTTGGTTCCGTTTGATCACTCCACTGTTGATACGAGCATTGCAAACAACAGTAATCTTGGAAAACTTGAGCCAGCTCCTCTGGTACTGAGGATAGTAGGGTTCTCCAAAGATTACCTTTCAAATTCAGGCCCTATGAGTCCTATTGCTGCTTTGCTGCTCTTGAAGCTTCTAACACGCCCAGACATGCCAAAGGCTTTTTCCAGCTTTGTTGAATGGACACACGAAGTCCTATCTTCTCTGACAGATGATGCCATCAATCATTTCCGGTTACTTGGAGCTACAGAAGTGCCGGCTGCTATTTTCAGGGTTTGCTTTCACTTCTTTGTAGTTCATACGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000226 GO:0003006 GO:0003674 GO:0005096 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005856 GO:0005874 GO:0005911 GO:0006457 GO:0006996 GO:0007010 GO:0007017 GO:0007021 GO:0007275 GO:0008047 GO:0008092 GO:0008150 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0015630 GO:0015631 GO:0016043 GO:0022414 GO:0022607 GO:0030054 GO:0030234 GO:0030695 GO:0032501 GO:0032502 GO:0034622 GO:0043085 GO:0043087 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043547 GO:0043933 GO:0044085 GO:0044093 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048487 GO:0048608 GO:0048731 GO:0048856 GO:0050790 GO:0051336 GO:0051345 GO:0055044 GO:0060589 GO:0061458 GO:0065003 GO:0065007 GO:0065009 GO:0071840 GO:0098772 GO:0099080 GO:0099081 GO:0099512 GO:0099513

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TFCD_C

Protein Analysis

212

Amino Acids

23.39

Weight (kDa)

6.44

Isoelectric Point (pI)

29.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ARM_TBCD	PF23579	1 - 174	7.4e-43	Tubulin-specific chaperone D-like, ARM repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000441)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica	MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis	pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis	RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata	RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora	Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii	Rroxscaffold_7G00210800
rosa_rugosa	Rorug05G0253300
rosa_samantha	Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana	Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	2 cut(s)	13, 30
AciI	CCGC	4 cut(s)	11, 28, 134, 152
AcsI	RAATTY	1 cut(s)	415
AfaI	GTAC	2 cut(s)	241, 378
AgsI	TTSAA	4 cut(s)	74, 414, 457, 506
AjuI	GAANNNNNNNTTGG	2 cut(s)	475, 507
AluBI	AGCT	6 cut(s)	56, 257, 368, 460, 498, 572
AluI	AGCT	6 cut(s)	56, 257, 368, 460, 498, 572
Alw26I	GTCTC	2 cut(s)	166, 189
AoxI	GGCC	1 cut(s)	421
ApeKI	GCWGC	3 cut(s)	440, 448, 587
ApoI	RAATTY	1 cut(s)	415
ArsI	GACNNNNNNTTYG	2 cut(s)	203, 235
AspS9I	GGNCC	1 cut(s)	422
BauI	CACGAG	1 cut(s)	290
BbvI	GCAGC	3 cut(s)	427, 435, 574
BccI	CCATC	3 cut(s)	210, 244, 554
BciVI	GTATCC	1 cut(s)	119
BclI	TGATCA	1 cut(s)	307
BcoDI	GTCTC	2 cut(s)	166, 189
BfmI	CTRYAG	1 cut(s)	573
BfuI	GTATCC	1 cut(s)	119
BisI	GCNGC	3 cut(s)	441, 449, 588
BlsI	GCNGC	3 cut(s)	442, 450, 589
BmgT120I	GGNCC	1 cut(s)	422
BmiI	GGNNCC	1 cut(s)	300
BmsI	GCATC	4 cut(s)	102, 163, 258, 532
BpuEI	CTTGAG	1 cut(s)	380
BsaWI	WCCGGW	1 cut(s)	558
Bse118I	RCCGGY	1 cut(s)	583
Bse3DI	GCAATG	1 cut(s)	330
BseGI	GGATG	1 cut(s)	67
BseMI	GCAATG	1 cut(s)	330
BseMII	CTCAG	1 cut(s)	371
BseRI	GAGGAG	1 cut(s)	360
BseXI	GCAGC	3 cut(s)	427, 435, 574
BshFI	GGCC	1 cut(s)	423
BsiSI	CCGG	2 cut(s)	559, 584
BsmAI	GTCTC	2 cut(s)	166, 189
BsnI	GGCC	1 cut(s)	423
Bsp143I	GATC	2 cut(s)	307, 630
BspACI	CCGC	4 cut(s)	11, 28, 134, 152
BspANI	GGCC	1 cut(s)	423
BspCNI	CTCAG	1 cut(s)	372
BspLI	GGNNCC	1 cut(s)	300
BsrBI	CCGCTC	2 cut(s)	13, 30
BsrDI	GCAATG	1 cut(s)	330
BsrFI	RCCGGY	1 cut(s)	583
BssAI	RCCGGY	1 cut(s)	583
BssMI	GATC	2 cut(s)	307, 630
BssSI	CACGAG	1 cut(s)	290
Bst2BI	CACGAG	1 cut(s)	290
Bst4CI	ACNGT	3 cut(s)	118, 319, 344
BstC8I	GCNNGC	2 cut(s)	366, 585
BstDEI	CTNAG	1 cut(s)	380
BstEII	GGTNACC	1 cut(s)	4
BstF5I	GGATG	1 cut(s)	67
BstKTI	GATC	2 cut(s)	310, 633
BstMAI	GTCTC	2 cut(s)	166, 189
BstMBI	GATC	2 cut(s)	307, 630
BstMWI	GCNNNNNNNGC	2 cut(s)	277, 457
BstNSI	RCATGY	1 cut(s)	481
BstPI	GGTNACC	1 cut(s)	4
BstSFI	CTRYAG	1 cut(s)	573
BstV1I	GCAGC	3 cut(s)	427, 435, 574
BsuI	GTATCC	1 cut(s)	119
BsuRI	GGCC	1 cut(s)	423
BtsCI	GGATG	1 cut(s)	67
BtsI	GCAGTG	1 cut(s)	224
BtsIMutI	CAGTG	3 cut(s)	222, 224, 315
Cac8I	GCNNGC	2 cut(s)	366, 585
Cfr10I	RCCGGY	1 cut(s)	583
Cfr13I	GGNCC	1 cut(s)	422
CseI	GACGC	1 cut(s)	218
Csp6I	GTAC	2 cut(s)	240, 377
CviAII	CATG	2 cut(s)	16, 478
CviQI	GTAC	2 cut(s)	240, 377
DdeI	CTNAG	1 cut(s)	380
DpnI	GATC	2 cut(s)	309, 632
DpnII	GATC	2 cut(s)	307, 630
Eco91I	GGTNACC	1 cut(s)	4
EcoO109I	RGGNCCY	1 cut(s)	422
EcoO65I	GGTNACC	1 cut(s)	4
EcoT22I	ATGCAT	1 cut(s)	95
FaeI	CATG	2 cut(s)	19, 481
FaiI	YATR	5 cut(s)	17, 53, 428, 479, 627
FalI	AAGNNNNNCTT	2 cut(s)	393, 425
FatI	CATG	2 cut(s)	15, 477
FauI	CCCGC	1 cut(s)	18
FbaI	TGATCA	1 cut(s)	307
Fnu4HI	GCNGC	3 cut(s)	441, 449, 588
FokI	GGATG	1 cut(s)	74
Fsp4HI	GCNGC	3 cut(s)	441, 449, 588
GluI	GCNGC	3 cut(s)	441, 449, 588
HaeIII	GGCC	1 cut(s)	423
HapII	CCGG	2 cut(s)	559, 584
HgaI	GACGC	1 cut(s)	218
Hin1II	CATG	2 cut(s)	19, 481
HindIII	AAGCTT	1 cut(s)	458
HinfI	GANTC	1 cut(s)	430
HpaII	CCGG	2 cut(s)	559, 584
Hpy188I	TCNGA	4 cut(s)	61, 166, 534, 635
Hpy188III	TCNNGA	3 cut(s)	71, 233, 454
HpyCH4III	ACNGT	3 cut(s)	118, 319, 344
HpyCH4V	TGCA	2 cut(s)	93, 335
HpyF10VI	GCNNNNNNNGC	2 cut(s)	277, 457
HpyF3I	CTNAG	1 cut(s)	380
Hsp92II	CATG	2 cut(s)	19, 481
KroI	GCCGGC	1 cut(s)	583
KroNI	GCCGGC	1 cut(s)	585
Ksp22I	TGATCA	1 cut(s)	307
Kzo9I	GATC	2 cut(s)	307, 630
LmnI	GCTCC	2 cut(s)	373, 569
Lsp1109I	GCAGC	3 cut(s)	427, 435, 574
LweI	GCATC	4 cut(s)	102, 163, 258, 532
MaeIII	GTNAC	3 cut(s)	4, 112, 561
MalI	GATC	2 cut(s)	309, 632
MbiI	CCGCTC	2 cut(s)	13, 30
MboI	GATC	2 cut(s)	307, 630
MboII	GAAGA	1 cut(s)	519
MluCI	AATT	3 cut(s)	44, 78, 415
MlyI	GAGTC	1 cut(s)	439
MnlI	CCTC	2 cut(s)	375, 381
Mph1103I	ATGCAT	1 cut(s)	95
MroNI	GCCGGC	1 cut(s)	583
MseI	TTAA	1 cut(s)	81
MspI	CCGG	2 cut(s)	559, 584
MwoI	GCNNNNNNNGC	2 cut(s)	277, 457
NaeI	GCCGGC	1 cut(s)	585
NdeII	GATC	2 cut(s)	307, 630
NgoMIV	GCCGGC	1 cut(s)	583
NlaIII	CATG	2 cut(s)	19, 481
NlaIV	GGNNCC	1 cut(s)	300
NmuCI	GTSAC	1 cut(s)	112
NsiI	ATGCAT	1 cut(s)	95
NspI	RCATGY	1 cut(s)	481
PdiI	GCCGGC	1 cut(s)	585
PkrI	GCNGC	3 cut(s)	442, 450, 589
PleI	GAGTC	1 cut(s)	438
PpsI	GAGTC	1 cut(s)	438
PspEI	GGTNACC	1 cut(s)	4
PspN4I	GGNNCC	1 cut(s)	300
PspPI	GGNCC	1 cut(s)	422
RsaI	GTAC	2 cut(s)	241, 378
RsaNI	GTAC	2 cut(s)	240, 377
SaqAI	TTAA	1 cut(s)	81
SatI	GCNGC	3 cut(s)	441, 449, 588
Sau3AI	GATC	2 cut(s)	307, 630
Sau96I	GGNCC	1 cut(s)	422
SchI	GAGTC	1 cut(s)	439
SfaNI	GCATC	4 cut(s)	102, 163, 258, 532
SfcI	CTRYAG	1 cut(s)	573
SmlI	CTYRAG	1 cut(s)	359
SmoI	CTYRAG	1 cut(s)	359
Sse9I	AATT	3 cut(s)	44, 78, 415
SsiI	CCGC	4 cut(s)	11, 28, 134, 152
TaaI	ACNGT	3 cut(s)	118, 319, 344
TasI	AATT	3 cut(s)	44, 78, 415
Tru1I	TTAA	1 cut(s)	81
Tru9I	TTAA	1 cut(s)	81
TscAI	CASTG	3 cut(s)	222, 231, 322
TseFI	GTSAC	1 cut(s)	112
TseI	GCWGC	3 cut(s)	440, 448, 587
Tsp45I	GTSAC	1 cut(s)	112
TspDTI	ATGAA	2 cut(s)	78, 614
TspGWI	ACGGA	1 cut(s)	291
TspRI	CASTG	3 cut(s)	222, 231, 322
XapI	RAATTY	1 cut(s)	415
XceI	RCATGY	1 cut(s)	481
Zsp2I	ATGCAT	1 cut(s)	95

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.