Rh7BG443600

f-box protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0000441
Physical Location & Seq
Reverse (-)
51300010 .. 51458669
158660 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG443600.1

Sequence Viewer

Length: 2626 bp
ATGAATGTCTTGGAGCACTCTGCCCCAACTCATGATGATGCCCATATTGCAGTAGAGACTTTTGTTGAAAATATTTTGGAGGAAGCCGCTGGAAATATCATGGAAACAATTGCGCAAAGAGTTATGGAGGAGGATGAACCTGGCTCAGAATCTAATGAGCATGACGTCTCTGAGGCTTCAGATAATGATTCTCATGTTAGTGATACGCCATCTCGGACTTGGGGTGAGATTTTTGATGAAGAACGGGATGGAGGTCCAAGTGCTGCAAGTGCTCCACCAAGTCTTGGCCCCCCAGTCTTTGGCCCGTCATCTTGTAAGGCTGCTTTTGAAATGGATGCAGTTGCAAGTGTGATGTATATACTTTGCAATGAAGAGCCACTCTGGTTGAGTTTATGCCTCAACGCACTGAATGGTCCGCTTCAGTACAAAGGATCGTGGAAGAAGACGGTGCTGCATTTGGAGAATGTGTCGTATGAACGCGACGAGGCTTGCAGAAAACCACTGAGTTTTGATGGATTCGACTCTTTGTTCTTGTACAGAAGATTATACAGGTGTCACACCACATTGGATGGTTTTTCTTTTGACAATGGGAATGTGGAAAGAAAGGACAAGATCACATTGGAAGAGTTTTCTTGTGATTATGATGGGAAGAAACCGGTTTTGCTCACTGGATTAGCTGATGCATGGCCTGCAAGGCGTACATGGACACTTGACCACTTATTGCAGAATTATAGAGATACAGCTTTCAAGATTTCTCAAAGGAGCTCACGTAAAATCTCAATGACATTCAAAGATTATGTTTCATATATGAAGGTTCAGCATGATGAGGATCCGCTTTATATCTTTGATCACAAGAGGTCTGGTGCTTCTTGGCATGTTGATCCAGCTCTGACCAGTGCCTGGAATACACTTCTATGTGGTCGTAAAAGGTGGGCCTTGTATCCTCCAGGAAGAGTACCTATAGGTGTCACAGTACATGTAAACGAAGAAGACGGTGATGTCAATATTGAAACTCCAACTTCGTTGCAGTGGTGGCTAGATTTTTATCCACTTCTTGCTGATGAAGACAAGCCCATAGAGTGCACCCAAATGCCGGGGGAGACGATTTTTGTTCCTAGTGGATGGTGGCACTGTGTCCTAAATCTTGAACCATCTATTGCTGTTACCCAGAACTTTGTAAATTCTAAGAACTTTGAATTTGTGTGCTTGGATATGGCACCTGGTTATCGTCATAAGGGAGTCTGCCGTGCTGGATTACTTGCAGATGATGAAGGCGGTATTGAGGATTCCACAAATCATATTCTCTATGATAAAGATGATTATAATTCCTCAGATATGACTAGGAAAGTAAAAAGAGTCAGAACTCTCAAACCTGGAGAATATCCTAGAAGTGAAAGAACTAGTAATGGTGCTCAGGGTTTTTCTTATGATGTAAATTTCTTAGCCATGTATCTGGATGAAGAGAGAGATCATTACAACTCTCCTTGGAGCTCAGGCAATTGCATAGGGCAACGAGAAATGAGAGAGTGGTTATTCAAGCTTTGGGTTGGAAAACCAGGAATGAGAGACTTGATCTGGAAGGGAGCATGTCTTGCACTAAATGCTAGCAAATGGTCAGAATCCCTGGCAGAAATTTGTGCCTTCCACAAATTGCCTTCTCCAACAGATGATGAGAGGCTTCCAGTTGGCACGGGTAGCAATCCTGTTTATCTCATGAGCAACTGCCTTGAGTTCTACAGTCTCCTAGGCAAAGTCAACTCCCCTCTGAAAAATCACGTACCTGACGTTTTGGCAAGTGGGATCATTTATCTTGAAAATGGAACATATAAAATTGTACCTTGGGATGGCATCAGAGTTCCTGATGTGATTGGTAACTGCAATTTTATTCCGGAGAAGGTCAAAGGAGATGTTTCTCCTTTTGGTGTATGGAGGAAGAAACAATTTGAATACAGAAAAGCTGGGGTCTCAACAAACGAATCCATCAGTTCAGCTGAATATACAAGGATATGGCCATATCTCATATCAAAACGATGCAAAGGAAAAATATATGCAGATTTAAGAGATACTGTGTCACGGGAAGATGAACTGAACTTAGCTTCCTTCCTGGGAGAGCAGCTCCGTAACCTCCATCTCTTGCCCCATCCACCTCTTAATATCTCAACTTTCTCAGATATTGAACAGGGATCAGATTTTCCATTCACCAACGGTAGTATGGAAGCTGTTCCCCATAAATCAAACATTCCTGCTGAATGGGATATATTCATTAGAACTCTATTCAAGAAGAAGAAGGATGTCTCAAGTCGCTTGATTAAATGGGGAGATCCAATTCCTAGCACACTCATAGAGAAAGTTGACAAGTACATCCTAGATGATTTTGCCAAGTTTCTGTACATGTTCAAGGATGAAAATGGTGTAAGCAAAGTTGGTAAAAGTTTTTCGTGGATACACTCTGATATCATGGATGACAACATTCACATGGAACTATATGGTTTTAATTCTTGCTTCATTGGCAACGCCAAAGACACTTGCCTGGTAAATAATGGTTCCTTGAATGTTGATGGTGACCGTGCAGAGAGGAAAACATGGTGCCCTAGCCACATTCTTGATTTCAGTAATCTTTCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
APH Cupin_8 F-box F-box-like JmjC

Protein Analysis

875

Amino Acids

99.25

Weight (kDa)

5.2

Isoelectric Point (pI)

44.44

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
JmjC PF02373 285 - 392 1.2e-12 JmjC domain, hydroxylase
Cupin_8 PF13621 286 - 395 9.9e-12 Cupin-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1323
AasI GACNNNNNNGTC 1 cut(s) 998
AatII GACGTC 1 cut(s) 168
Acc16I TGCGCA 1 cut(s) 114
AccB1I GGYRCC 2 cut(s) 1216, 2586
AccB7I CCANNNNNTGG 3 cut(s) 284, 299, 900
AccII CGCG 1 cut(s) 480
AccIII TCCGGA 1 cut(s) 1888
AciI CCGC 4 cut(s) 87, 416, 833, 1275
AclWI GGATC 7 cut(s) 439, 824, 837, 875, 1808, 2191, 2315
AcoI YGGCCR 1 cut(s) 2009
AcsI RAATTY 4 cut(s) 1180, 1196, 1435, 1632
AcuI CTGAAG 2 cut(s) 162, 404
AcyI GRCGYC 1 cut(s) 165
AfaI GTAC 9 cut(s) 425, 536, 700, 957, 975, 1779, 1836, 2360, 2390
AfiI CCNNNNNNNGG 5 cut(s) 284, 299, 900, 1093, 1844
AflIII ACRYGT 2 cut(s) 976, 2391
AgeI ACCGGT 1 cut(s) 655
AhlI ACTAGT 1 cut(s) 1400
AjnI CCWGG 9 cut(s) 139, 899, 946, 1219, 1372, 1555, 1623, 2103, 2529
AloI GAACNNNNNNTCC 2 cut(s) 2081, 2113
Alw21I GWGCWC 6 cut(s) 18, 274, 767, 1085, 1414, 1493
Alw26I GTCTC 7 cut(s) 50, 172, 1094, 1560, 1745, 1969, 2299
Alw44I GTGCAC 1 cut(s) 1081
AlwI GGATC 7 cut(s) 439, 824, 837, 875, 1808, 2191, 2315
AlwNI CAGNNNCTG 1 cut(s) 900
Aor13HI TCCGGA 1 cut(s) 1888
AoxI GGCC 5 cut(s) 286, 301, 686, 933, 2009
ApaLI GTGCAC 1 cut(s) 1081
ApeKI GCWGC 4 cut(s) 263, 320, 451, 2113
ApoI RAATTY 4 cut(s) 1180, 1196, 1435, 1632
AsiGI ACCGGT 1 cut(s) 655
Asp700I GAANNNNTTC 1 cut(s) 2220
AspA2I CCTAGG 1 cut(s) 1744
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 5 cut(s) 254, 287, 302, 413, 933
AsuC2I CCSGG 1 cut(s) 1095
AsuHPI GGTGA 4 cut(s) 236, 1007, 2191, 2573
AsuNHI GCTAGC 1 cut(s) 1604
AvaII GGWCC 2 cut(s) 254, 413
AvrII CCTAGG 1 cut(s) 1744
BaeGI GKGCMC 2 cut(s) 1085, 2591
BalI TGGCCA 1 cut(s) 2011
BamHI GGATCC 1 cut(s) 829
BanI GGYRCC 2 cut(s) 1216, 2586
BanII GRGCYC 2 cut(s) 767, 1493
BbsI GAAGAC 3 cut(s) 449, 996, 1071
Bbv12I GWGCWC 6 cut(s) 18, 274, 767, 1085, 1414, 1493
BbvI GCAGC 4 cut(s) 250, 307, 438, 2125
BceAI ACGGC 1 cut(s) 1230
BciT130I CCWGG 9 cut(s) 141, 901, 948, 1221, 1374, 1557, 1625, 2105, 2531
BciVI GTATCC 2 cut(s) 951, 2436
BclI TGATCA 1 cut(s) 847
BcnI CCSGG 1 cut(s) 1095
BcoDI GTCTC 7 cut(s) 50, 172, 1094, 1560, 1745, 1969, 2299
BcuI ACTAGT 1 cut(s) 1400
BfmI CTRYAG 3 cut(s) 960, 1735, 2622
BfuI GTATCC 2 cut(s) 951, 2436
BglI GCCNNNNNGGC 1 cut(s) 694
BisI GCNGC 5 cut(s) 87, 264, 321, 452, 2114
BlnI CCTAGG 1 cut(s) 1744
BlsI GCNGC 5 cut(s) 88, 265, 322, 453, 2115
Bme18I GGWCC 2 cut(s) 254, 413
BmgT120I GGNCC 5 cut(s) 254, 287, 302, 413, 933
BmiI GGNNCC 5 cut(s) 289, 831, 1218, 2545, 2588
BmrI ACTGGG 1 cut(s) 287
BmsI GCATC 5 cut(s) 28, 325, 670, 1857, 2021
BmtI GCTAGC 1 cut(s) 1608
BmuI ACTGGG 1 cut(s) 287
BpiI GAAGAC 3 cut(s) 449, 996, 1071
BplI GAGNNNNNCTC 2 cut(s) 2100, 2132
BpmI CTGGAG 2 cut(s) 930, 1395
Bpu10I CCTNAGC 2 cut(s) 1413, 1492
BpuEI CTTGAG 2 cut(s) 1748, 2281
BpuMI CCSGG 1 cut(s) 1095
BsaAI YACGTR 2 cut(s) 770, 1777
BsaBI GATNNNNATC 2 cut(s) 828, 1044
BsaHI GRCGYC 1 cut(s) 165
BsaI GGTCTC 1 cut(s) 1969
BsaJI CCNNGG 6 cut(s) 1094, 1484, 1623, 1744, 1838, 2104
BsaWI WCCGGW 2 cut(s) 655, 1888
BsaXI ACNNNNNCTCC 4 cut(s) 452, 482, 754, 784
Bsc4I CCNNNNNNNGG 5 cut(s) 284, 299, 900, 1093, 1844
Bse118I RCCGGY 1 cut(s) 655
Bse1I ACTGG 4 cut(s) 293, 673, 894, 1682
Bse3DI GCAATG 1 cut(s) 373
Bse8I GATNNNNATC 2 cut(s) 828, 1044
BseAI TCCGGA 1 cut(s) 1888
BseBI CCWGG 9 cut(s) 141, 901, 948, 1221, 1374, 1557, 1625, 2105, 2531
BseDI CCNNGG 6 cut(s) 1094, 1484, 1623, 1744, 1838, 2104
BseJI GATNNNNATC 2 cut(s) 828, 1044
BseLI CCNNNNNNNGG 5 cut(s) 284, 299, 900, 1093, 1844
BseMI GCAATG 1 cut(s) 373
BseMII CTCAG 7 cut(s) 159, 162, 494, 1344, 1427, 1506, 2181
BseNI ACTGG 4 cut(s) 293, 673, 894, 1682
BseRI GAGGAG 1 cut(s) 143
BseSI GKGCMC 2 cut(s) 1085, 2591
BseXI GCAGC 4 cut(s) 250, 307, 438, 2125
BseYI CCCAGC 1 cut(s) 1958
BsgI GTGCAG 1 cut(s) 2589
Bsh1236I CGCG 1 cut(s) 480
BshFI GGCC 5 cut(s) 288, 303, 688, 935, 2011
BshNI GGYRCC 2 cut(s) 1216, 2586
BshTI ACCGGT 1 cut(s) 655
BsiHKAI GWGCWC 6 cut(s) 18, 274, 767, 1085, 1414, 1493
BsiSI CCGG 3 cut(s) 656, 1094, 1889
BslI CCNNNNNNNGG 5 cut(s) 284, 299, 900, 1093, 1844
BsmAI GTCTC 7 cut(s) 50, 172, 1094, 1560, 1745, 1969, 2299
BsmBI CGTCTC 2 cut(s) 172, 1094
BsnI GGCC 5 cut(s) 288, 303, 688, 935, 2011
Bso31I GGTCTC 1 cut(s) 1969
Bsp1286I GDGCHC 7 cut(s) 18, 274, 767, 1085, 1414, 1493, 2591
Bsp13I TCCGGA 1 cut(s) 1888
Bsp1407I TGTACA 2 cut(s) 534, 2388
BspACI CCGC 4 cut(s) 87, 416, 833, 1275
BspANI GGCC 5 cut(s) 288, 303, 688, 935, 2011
BspCNI CTCAG 7 cut(s) 158, 163, 495, 1343, 1426, 1505, 2180
BspEI TCCGGA 1 cut(s) 1888
BspFNI CGCG 1 cut(s) 480
BspHI TCATGA 2 cut(s) 31, 1713
BspLI GGNNCC 5 cut(s) 289, 831, 1218, 2545, 2588
BspOI GCTAGC 1 cut(s) 1608
BspPI GGATC 7 cut(s) 439, 824, 837, 875, 1808, 2191, 2315
BspQI GCTCTTC 1 cut(s) 366
BspT107I GGYRCC 2 cut(s) 1216, 2586
BspTNI GGTCTC 1 cut(s) 1969
BsrDI GCAATG 1 cut(s) 373
BsrFI RCCGGY 1 cut(s) 655
BsrGI TGTACA 2 cut(s) 534, 2388
BsrI ACTGG 4 cut(s) 293, 673, 894, 1682
BssAI RCCGGY 1 cut(s) 655
BssECI CCNNGG 6 cut(s) 1094, 1484, 1623, 1744, 1838, 2104
BssNI GRCGYC 1 cut(s) 165
BssT1I CCWWGG 3 cut(s) 1484, 1744, 1838
Bst2UI CCWGG 9 cut(s) 141, 901, 948, 1221, 1374, 1557, 1625, 2105, 2531
Bst4CI ACNGT 8 cut(s) 448, 973, 995, 1133, 1739, 2068, 2207, 2567
Bst6I CTCTTC 4 cut(s) 366, 618, 946, 1455
BstACI GRCGYC 1 cut(s) 165
BstAPI GCANNNNNTGC 3 cut(s) 689, 1592, 1601
BstAUI TGTACA 2 cut(s) 534, 2388
BstBAI YACGTR 2 cut(s) 770, 1777
BstC8I GCNNGC 3 cut(s) 490, 690, 1606
BstEII GGTNACC 1 cut(s) 2561
BstFNI CGCG 1 cut(s) 480
BstHHI GCGC 1 cut(s) 115
BstMAI GTCTC 7 cut(s) 50, 172, 1094, 1560, 1745, 1969, 2299
BstMWI GCNNNNNNNGC 9 cut(s) 47, 269, 689, 694, 1033, 1592, 1601, 1695, 2508
BstNI CCWGG 9 cut(s) 141, 901, 948, 1221, 1374, 1557, 1625, 2105, 2531
BstNSI RCATGY 4 cut(s) 878, 980, 1590, 2395
BstPI GGTNACC 1 cut(s) 2561
BstSFI CTRYAG 3 cut(s) 960, 1735, 2622
BstSLI GKGCMC 2 cut(s) 1085, 2591
BstUI CGCG 1 cut(s) 480
BstV1I GCAGC 4 cut(s) 250, 307, 438, 2125
BstV2I GAAGAC 3 cut(s) 449, 996, 1071
BstX2I RGATCY 2 cut(s) 829, 2320
BstXI CCANNNNNNTGG 1 cut(s) 1453
BstYI RGATCY 2 cut(s) 829, 2320
BsuI GTATCC 2 cut(s) 951, 2436
BsuRI GGCC 5 cut(s) 288, 303, 688, 935, 2011
BtsI GCAGTG 1 cut(s) 1034
BtsIMutI CAGTG 6 cut(s) 404, 500, 666, 901, 1034, 1129
Cac8I GCNNGC 3 cut(s) 490, 690, 1606
CaiI CAGNNNCTG 1 cut(s) 900
CciI TCATGA 2 cut(s) 31, 1713
CfoI GCGC 1 cut(s) 115
Cfr10I RCCGGY 1 cut(s) 655
Cfr13I GGNCC 5 cut(s) 254, 287, 302, 413, 933
CsiI ACCWGGT 1 cut(s) 1219
Csp6I GTAC 9 cut(s) 424, 535, 699, 956, 974, 1778, 1835, 2359, 2389
CspAI ACCGGT 1 cut(s) 655
CspCI CAANNNNNGTGG 2 cut(s) 366, 401
CviQI GTAC 9 cut(s) 424, 535, 699, 956, 974, 1778, 1835, 2359, 2389
DrdI GACNNNNNNGTC 1 cut(s) 998
DseDI GACNNNNNNGTC 1 cut(s) 998
EaeI YGGCCR 1 cut(s) 2009
Eam1104I CTCTTC 4 cut(s) 366, 618, 946, 1455
EarI CTCTTC 4 cut(s) 366, 618, 946, 1455
Ecl136II GAGCTC 2 cut(s) 765, 1491
Eco130I CCWWGG 3 cut(s) 1484, 1744, 1838
Eco24I GRGCYC 2 cut(s) 767, 1493
Eco31I GGTCTC 1 cut(s) 1969
Eco32I GATATC 1 cut(s) 2455
Eco47I GGWCC 2 cut(s) 254, 413
Eco53kI GAGCTC 2 cut(s) 765, 1491
Eco57I CTGAAG 2 cut(s) 162, 404
Eco91I GGTNACC 1 cut(s) 2561
EcoICRI GAGCTC 2 cut(s) 765, 1491
EcoO65I GGTNACC 1 cut(s) 2561
EcoRII CCWGG 9 cut(s) 139, 899, 946, 1219, 1372, 1555, 1623, 2103, 2529
EcoRV GATATC 1 cut(s) 2455
EcoT14I CCWWGG 3 cut(s) 1484, 1744, 1838
EcoT22I ATGCAT 1 cut(s) 685
EcoT38I GRGCYC 2 cut(s) 767, 1493
ErhI CCWWGG 3 cut(s) 1484, 1744, 1838
Esp3I CGTCTC 2 cut(s) 172, 1094
FbaI TGATCA 1 cut(s) 847
Fnu4HI GCNGC 5 cut(s) 87, 264, 321, 452, 2114
FriOI GRGCYC 2 cut(s) 767, 1493
Fsp4HI GCNGC 5 cut(s) 87, 264, 321, 452, 2114
FspI TGCGCA 1 cut(s) 114
GlaI GCGC 1 cut(s) 114
GluI GCNGC 5 cut(s) 87, 264, 321, 452, 2114
GsaI CCCAGC 1 cut(s) 1962
GsuI CTGGAG 2 cut(s) 930, 1395
HaeIII GGCC 5 cut(s) 288, 303, 688, 935, 2011
HapII CCGG 3 cut(s) 656, 1094, 1889
HhaI GCGC 1 cut(s) 115
Hin1I GRCGYC 1 cut(s) 165
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HincII GTYRAC 2 cut(s) 1756, 2353
HindII GTYRAC 2 cut(s) 1756, 2353
HindIII AAGCTT 1 cut(s) 1538
HinfI GANTC 9 cut(s) 149, 188, 516, 521, 1239, 1286, 1356, 1619, 1976
HpaII CCGG 3 cut(s) 656, 1094, 1889
HphI GGTGA 4 cut(s) 236, 1007, 2191, 2573
Hpy166II GTNNAC 4 cut(s) 982, 1083, 1756, 2353
Hpy8I GTNNAC 4 cut(s) 982, 1083, 1756, 2353
Hpy99I CGWCG 1 cut(s) 485
HpyAV CCTTC 8 cut(s) 805, 1265, 1573, 1651, 1665, 1888, 2110, 2281
HpyCH4III ACNGT 8 cut(s) 448, 973, 995, 1133, 1739, 2068, 2207, 2567
HpyCH4IV ACGT 4 cut(s) 165, 769, 1776, 1785
HpyF10VI GCNNNNNNNGC 9 cut(s) 47, 269, 689, 694, 1033, 1592, 1601, 1695, 2508
HpySE526I ACGT 4 cut(s) 165, 769, 1776, 1785
Hsp92I GRCGYC 1 cut(s) 165
HspAI GCGC 1 cut(s) 113
Kpn2I TCCGGA 1 cut(s) 1888
Ksp22I TGATCA 1 cut(s) 847
LguI GCTCTTC 1 cut(s) 366
LmnI GCTCC 6 cut(s) 13, 277, 762, 1488, 1583, 2121
Lsp1109I GCAGC 4 cut(s) 250, 307, 438, 2125
LweI GCATC 5 cut(s) 28, 325, 670, 1857, 2021
MabI ACCWGGT 1 cut(s) 1219
MaeII ACGT 4 cut(s) 165, 769, 1776, 1785
MaeIII GTNAC 7 cut(s) 554, 967, 1162, 1871, 2070, 2120, 2561
MfeI CAATTG 2 cut(s) 108, 1498
MflI RGATCY 2 cut(s) 829, 2320
MhlI GDGCHC 7 cut(s) 18, 274, 767, 1085, 1414, 1493, 2591
MlsI TGGCCA 1 cut(s) 2011
MluNI TGGCCA 1 cut(s) 2011
MlyI GAGTC 3 cut(s) 515, 1248, 1365
MmeI TCCRAC 3 cut(s) 1040, 1528, 1685
Mox20I TGGCCA 1 cut(s) 2011
Mph1103I ATGCAT 1 cut(s) 685
MroI TCCGGA 1 cut(s) 1888
MroXI GAANNNNTTC 1 cut(s) 2220
MscI TGGCCA 1 cut(s) 2011
MseI TTAA 4 cut(s) 2057, 2151, 2310, 2493
MslI CAYNNNNRTG 5 cut(s) 36, 198, 913, 1088, 2474
Msp20I TGGCCA 1 cut(s) 2011
MspA1I CMGCKG 2 cut(s) 89, 1991
MspI CCGG 3 cut(s) 656, 1094, 1889
MunI CAATTG 2 cut(s) 108, 1498
MvaI CCWGG 9 cut(s) 141, 901, 948, 1221, 1374, 1557, 1625, 2105, 2531
MvnI CGCG 1 cut(s) 480
MwoI GCNNNNNNNGC 9 cut(s) 47, 269, 689, 694, 1033, 1592, 1601, 1695, 2508
NciI CCSGG 1 cut(s) 1095
NheI GCTAGC 1 cut(s) 1604
NlaIV GGNNCC 5 cut(s) 289, 831, 1218, 2545, 2588
NmuCI GTSAC 4 cut(s) 554, 967, 2070, 2561
NsbI TGCGCA 1 cut(s) 114
NsiI ATGCAT 1 cut(s) 685
NspI RCATGY 4 cut(s) 878, 980, 1590, 2395
PagI TCATGA 2 cut(s) 31, 1713
PciI ACATGT 2 cut(s) 976, 2391
PciSI GCTCTTC 1 cut(s) 366
PcsI WCGNNNNNNNCGW 1 cut(s) 1782
PdmI GAANNNNTTC 1 cut(s) 2220
PfeI GAWTC 6 cut(s) 149, 188, 516, 1286, 1619, 1976
PflMI CCANNNNNTGG 3 cut(s) 284, 299, 900
PfoI TCCNGGA 1 cut(s) 946
PinAI ACCGGT 1 cut(s) 655
PkrI GCNGC 5 cut(s) 88, 265, 322, 453, 2115
PleI GAGTC 3 cut(s) 515, 1247, 1364
PpsI GAGTC 3 cut(s) 515, 1247, 1364
Ppu21I YACGTR 2 cut(s) 770, 1777
PscI ACATGT 2 cut(s) 976, 2391
PsiI TTATAA 1 cut(s) 1323
Psp124BI GAGCTC 2 cut(s) 767, 1493
Psp6I CCWGG 9 cut(s) 139, 899, 946, 1219, 1372, 1555, 1623, 2103, 2529
PspEI GGTNACC 1 cut(s) 2561
PspFI CCCAGC 1 cut(s) 1958
PspGI CCWGG 9 cut(s) 139, 899, 946, 1219, 1372, 1555, 1623, 2103, 2529
PspN4I GGNNCC 5 cut(s) 289, 831, 1218, 2545, 2588
PspPI GGNCC 5 cut(s) 254, 287, 302, 413, 933
PstNI CAGNNNCTG 1 cut(s) 900
PsuI RGATCY 2 cut(s) 829, 2320
PvuII CAGCTG 1 cut(s) 1991
RsaI GTAC 9 cut(s) 425, 536, 700, 957, 975, 1779, 1836, 2360, 2390
RsaNI GTAC 9 cut(s) 424, 535, 699, 956, 974, 1778, 1835, 2359, 2389
RseI CAYNNNNRTG 5 cut(s) 36, 198, 913, 1088, 2474
SacI GAGCTC 2 cut(s) 767, 1493
SapI GCTCTTC 1 cut(s) 366
SaqAI TTAA 4 cut(s) 2057, 2151, 2310, 2493
SatI GCNGC 5 cut(s) 87, 264, 321, 452, 2114
Sau96I GGNCC 5 cut(s) 254, 287, 302, 413, 933
SchI GAGTC 3 cut(s) 515, 1248, 1365
SduI GDGCHC 7 cut(s) 18, 274, 767, 1085, 1414, 1493, 2591
SexAI ACCWGGT 1 cut(s) 1219
SfaNI GCATC 5 cut(s) 28, 325, 670, 1857, 2021
SfcI CTRYAG 3 cut(s) 960, 1735, 2622
SinI GGWCC 2 cut(s) 254, 413
SmiMI CAYNNNNRTG 5 cut(s) 36, 198, 913, 1088, 2474
SmlI CTYRAG 2 cut(s) 1727, 2296
SmoI CTYRAG 2 cut(s) 1727, 2296
SpeI ACTAGT 1 cut(s) 1400
SsiI CCGC 4 cut(s) 87, 416, 833, 1275
SspI AATATT 2 cut(s) 73, 1006
SstI GAGCTC 2 cut(s) 767, 1493
StyI CCWWGG 3 cut(s) 1484, 1744, 1838
TaaI ACNGT 8 cut(s) 448, 973, 995, 1133, 1739, 2068, 2207, 2567
TaiI ACGT 4 cut(s) 168, 772, 1779, 1788
TaqI TCGA 1 cut(s) 519
TatI WGTACW 5 cut(s) 423, 534, 973, 2358, 2388
TauI GCSGC 1 cut(s) 89
TfiI GAWTC 6 cut(s) 149, 188, 516, 1286, 1619, 1976
Tru1I TTAA 4 cut(s) 2057, 2151, 2310, 2493
Tru9I TTAA 4 cut(s) 2057, 2151, 2310, 2493
TscAI CASTG 6 cut(s) 411, 507, 673, 901, 1034, 1136
TseFI GTSAC 4 cut(s) 554, 967, 2070, 2561
TseI GCWGC 4 cut(s) 263, 320, 451, 2113
Tsp45I GTSAC 4 cut(s) 554, 967, 2070, 2561
TspGWI ACGGA 1 cut(s) 2108
TspRI CASTG 6 cut(s) 411, 507, 673, 901, 1034, 1136
Van91I CCANNNNNTGG 3 cut(s) 284, 299, 900
VneI GTGCAC 1 cut(s) 1081
VpaK11BI GGWCC 2 cut(s) 254, 413
XapI RAATTY 4 cut(s) 1180, 1196, 1435, 1632
XceI RCATGY 4 cut(s) 878, 980, 1590, 2395
XcmI CCANNNNNNNNNTGG 2 cut(s) 216, 2209
XmaJI CCTAGG 1 cut(s) 1744
XmnI GAANNNNTTC 1 cut(s) 2220
ZraI GACGTC 1 cut(s) 166
Zsp2I ATGCAT 1 cut(s) 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.