RLG00000003481

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000441
Physical Location & Seq
Reverse (-)
48941773 .. 48942416
644 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003481

Sequence Viewer

Length: 561 bp
ATGGCTAAAGAGTACACCCACCTGGAATTTAGGTGCGACCTTCTCAAGTTTGGACGTGTTATGACCGACGAGTTAAGGGCTGAAATTACTGAAGTGAAGCTTGATCTAATAGAGTCCACACCGTTTAGGGATTTGTTTAGAGCTTTTTATGAGCGGCAAATAATAGACTCTGCTTGTAGGAAGTCTGATAGTGACATCGTATCTCTTTTAAAATGCTTTGACAAGGAAAAAAACTCGTTTCAGTTTGGGGAAATTACTAGTACAATATCTGTAGGTGACATTGCCGAACTGTTTGGTTTGAATATTGAAGGCCGTGAGATCAACCTTAACCAGAAGAAGAGAAAAGGGGATTCTGATTTCATTAAAAGACGATTCCCTGGAGTGAAAAGGTTGTCCAAGGTGATCCTGGAGCAACAAATCAAAGATGTATCTAAACTGAGGGGGCTTGAGAATGAATGTGATTTTGTTAGAGGACCTAGATTCAATGTCTCTCTATGCCTGGGCACCCGCAGTGAAGAATTACTTGGACAACTCCCTTTTGAGTATGAATGGTCGGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

187

Amino Acids

21.6

Weight (kDa)

6.03

Isoelectric Point (pI)

48.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 503
AccBSI CCGCTC 1 cut(s) 154
AciI CCGC 2 cut(s) 154, 508
AclWI GGATC 1 cut(s) 397
AcsI RAATTY 1 cut(s) 26
AcuI CTGAAG 1 cut(s) 111
AfaI GTAC 2 cut(s) 14, 262
AflIII ACRYGT 1 cut(s) 55
AgsI TTSAA 3 cut(s) 301, 308, 484
AhlI ACTAGT 1 cut(s) 257
AjiI CACGTC 1 cut(s) 56
AjnI CCWGG 4 cut(s) 21, 376, 405, 498
AjuI GAANNNNNNNTTGG 2 cut(s) 507, 539
AluBI AGCT 2 cut(s) 100, 143
AluI AGCT 2 cut(s) 100, 143
Alw26I GTCTC 1 cut(s) 493
AlwI GGATC 1 cut(s) 397
AoxI GGCC 2 cut(s) 310, 555
ApoI RAATTY 1 cut(s) 26
AspS9I GGNCC 1 cut(s) 473
AsuHPI GGTGA 2 cut(s) 287, 412
AvaII GGWCC 1 cut(s) 473
BaeGI GKGCMC 1 cut(s) 506
BanI GGYRCC 1 cut(s) 503
BceAI ACGGC 1 cut(s) 297
BciT130I CCWGG 4 cut(s) 23, 378, 407, 500
BcoDI GTCTC 1 cut(s) 493
BcuI ACTAGT 1 cut(s) 257
BfaI CTAG 2 cut(s) 258, 477
BfmI CTRYAG 1 cut(s) 270
BisI GCNGC 1 cut(s) 155
BlsI GCNGC 1 cut(s) 156
Bme1390I CCNGG 4 cut(s) 23, 378, 407, 500
Bme18I GGWCC 1 cut(s) 473
BmgBI CACGTC 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 473
BmiI GGNNCC 1 cut(s) 505
BmrFI CCNGG 4 cut(s) 23, 378, 407, 500
BpmI CTGGAG 2 cut(s) 399, 428
BpuEI CTTGAG 2 cut(s) 29, 467
BsaJI CCNNGG 3 cut(s) 376, 396, 499
Bse3DI GCAATG 1 cut(s) 279
BseBI CCWGG 4 cut(s) 23, 378, 407, 500
BseDI CCNNGG 3 cut(s) 376, 396, 499
BseMI GCAATG 1 cut(s) 279
BseMII CTCAG 1 cut(s) 428
BseSI GKGCMC 1 cut(s) 506
BshFI GGCC 2 cut(s) 312, 557
BshNI GGYRCC 1 cut(s) 503
BsmAI GTCTC 1 cut(s) 493
BsnI GGCC 2 cut(s) 312, 557
Bsp1286I GDGCHC 1 cut(s) 506
Bsp143I GATC 3 cut(s) 103, 318, 402
BspACI CCGC 2 cut(s) 154, 508
BspANI GGCC 2 cut(s) 312, 557
BspCNI CTCAG 1 cut(s) 429
BspLI GGNNCC 1 cut(s) 505
BspPI GGATC 1 cut(s) 397
BspT107I GGYRCC 1 cut(s) 503
BsrBI CCGCTC 1 cut(s) 154
BsrDI GCAATG 1 cut(s) 279
BssECI CCNNGG 3 cut(s) 376, 396, 499
BssMI GATC 3 cut(s) 103, 318, 402
BssT1I CCWWGG 1 cut(s) 396
Bst2UI CCWGG 4 cut(s) 23, 378, 407, 500
Bst4CI ACNGT 2 cut(s) 123, 291
Bst6I CTCTTC 1 cut(s) 332
BstDEI CTNAG 1 cut(s) 437
BstKTI GATC 3 cut(s) 106, 321, 405
BstMAI GTCTC 1 cut(s) 493
BstMBI GATC 3 cut(s) 103, 318, 402
BstNI CCWGG 4 cut(s) 23, 378, 407, 500
BstSCI CCNGG 4 cut(s) 21, 376, 405, 498
BstSFI CTRYAG 1 cut(s) 270
BstSLI GKGCMC 1 cut(s) 506
BsuRI GGCC 2 cut(s) 312, 557
BtrI CACGTC 1 cut(s) 56
BtsI GCAGTG 1 cut(s) 517
BtsIMutI CAGTG 1 cut(s) 517
Cfr13I GGNCC 1 cut(s) 473
Csp6I GTAC 2 cut(s) 13, 261
CviJI RGCY 7 cut(s) 5, 80, 100, 143, 312, 445, 557
CviKI_1 RGCY 7 cut(s) 5, 80, 100, 143, 312, 445, 557
CviQI GTAC 2 cut(s) 13, 261
DdeI CTNAG 1 cut(s) 437
DpnI GATC 3 cut(s) 105, 320, 404
DpnII GATC 3 cut(s) 103, 318, 402
DraI TTTAAA 1 cut(s) 210
Eam1104I CTCTTC 1 cut(s) 332
EarI CTCTTC 1 cut(s) 332
Eco130I CCWWGG 1 cut(s) 396
Eco47I GGWCC 1 cut(s) 473
Eco57I CTGAAG 1 cut(s) 111
EcoO109I RGGNCCY 1 cut(s) 473
EcoRII CCWGG 4 cut(s) 21, 376, 405, 498
EcoT14I CCWWGG 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 396
FaiI YATR 4 cut(s) 62, 150, 496, 546
FalI AAGNNNNNCTT 4 cut(s) 84, 116, 507, 539
FauI CCCGC 1 cut(s) 515
Fnu4HI GCNGC 1 cut(s) 155
Fsp4HI GCNGC 1 cut(s) 155
FspBI CTAG 2 cut(s) 258, 477
GluI GCNGC 1 cut(s) 155
GsuI CTGGAG 2 cut(s) 399, 428
HaeIII GGCC 2 cut(s) 312, 557
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 5 cut(s) 113, 167, 350, 372, 480
HphI GGTGA 2 cut(s) 287, 412
Hpy166II GTNNAC 2 cut(s) 15, 117
Hpy188I TCNGA 2 cut(s) 187, 355
Hpy8I GTNNAC 2 cut(s) 15, 117
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 2 cut(s) 50, 302
HpyCH4III ACNGT 2 cut(s) 123, 291
HpyCH4IV ACGT 1 cut(s) 55
HpyF3I CTNAG 1 cut(s) 437
HpySE526I ACGT 1 cut(s) 55
Kzo9I GATC 3 cut(s) 103, 318, 402
LmnI GCTCC 1 cut(s) 409
LpnPI CCDG 9 cut(s) 8, 35, 344, 363, 390, 392, 419, 485, 512
MaeI CTAG 2 cut(s) 258, 477
MaeII ACGT 1 cut(s) 55
MaeIII GTNAC 2 cut(s) 191, 275
MalI GATC 3 cut(s) 105, 320, 404
MbiI CCGCTC 1 cut(s) 154
MboI GATC 3 cut(s) 103, 318, 402
MboII GAAGA 3 cut(s) 346, 349, 527
MhlI GDGCHC 1 cut(s) 506
MluCI AATT 4 cut(s) 26, 84, 252, 518
MlyI GAGTC 2 cut(s) 122, 161
MnlI CCTC 2 cut(s) 432, 464
MseI TTAA 4 cut(s) 74, 209, 327, 363
MspR9I CCNGG 4 cut(s) 23, 378, 407, 500
MvaI CCWGG 4 cut(s) 23, 378, 407, 500
NdeII GATC 3 cut(s) 103, 318, 402
NlaIV GGNNCC 1 cut(s) 505
NmuCI GTSAC 2 cut(s) 191, 275
PfeI GAWTC 3 cut(s) 350, 372, 480
PfoI TCCNGGA 1 cut(s) 405
PkrI GCNGC 1 cut(s) 156
PleI GAGTC 2 cut(s) 121, 161
PpsI GAGTC 2 cut(s) 121, 161
PpuMI RGGWCCY 1 cut(s) 473
Psp5II RGGWCCY 1 cut(s) 473
Psp6I CCWGG 4 cut(s) 21, 376, 405, 498
PspGI CCWGG 4 cut(s) 21, 376, 405, 498
PspN4I GGNNCC 1 cut(s) 505
PspPI GGNCC 1 cut(s) 473
PspPPI RGGWCCY 1 cut(s) 473
RsaI GTAC 2 cut(s) 14, 262
RsaNI GTAC 2 cut(s) 13, 261
SaqAI TTAA 4 cut(s) 74, 209, 327, 363
SatI GCNGC 1 cut(s) 155
Sau3AI GATC 3 cut(s) 103, 318, 402
Sau96I GGNCC 1 cut(s) 473
SchI GAGTC 2 cut(s) 122, 161
ScrFI CCNGG 4 cut(s) 23, 378, 407, 500
SduI GDGCHC 1 cut(s) 506
SfcI CTRYAG 1 cut(s) 270
SinI GGWCC 1 cut(s) 473
SmlI CTYRAG 2 cut(s) 44, 446
SmoI CTYRAG 2 cut(s) 44, 446
SpeI ACTAGT 1 cut(s) 257
Sse9I AATT 4 cut(s) 26, 84, 252, 518
SsiI CCGC 2 cut(s) 154, 508
SspI AATATT 1 cut(s) 304
SspMI CTAG 2 cut(s) 258, 477
StyD4I CCNGG 4 cut(s) 21, 376, 405, 498
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 2 cut(s) 123, 291
TaiI ACGT 1 cut(s) 58
TaqII GACCGA 1 cut(s) 80
TasI AATT 4 cut(s) 26, 84, 252, 518
TatI WGTACW 2 cut(s) 12, 260
TauI GCSGC 1 cut(s) 157
TfiI GAWTC 3 cut(s) 350, 372, 480
Tru1I TTAA 4 cut(s) 74, 209, 327, 363
Tru9I TTAA 4 cut(s) 74, 209, 327, 363
TscAI CASTG 1 cut(s) 517
TseFI GTSAC 2 cut(s) 191, 275
Tsp45I GTSAC 2 cut(s) 191, 275
TspDTI ATGAA 3 cut(s) 349, 468, 561
TspRI CASTG 1 cut(s) 517
VpaK11BI GGWCC 1 cut(s) 473
XapI RAATTY 1 cut(s) 26
XcmI CCANNNNNNNNNTGG 1 cut(s) 403
XspI CTAG 2 cut(s) 258, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.