Rh5CG263100

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0000441
Physical Location & Seq
Forward (+)
28099259 .. 28099942
684 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG263100.1

Sequence Viewer

Length: 684 bp
ATGATAGAGTCCACACCGTTCAGGAATTTGTTTAGAGCTTTTTATGAGCGGAAAATAATAGACTCTGCTTGTAGGAAGTCTGATATTGACATCGTTTCTCTTTTAAAATGCTTTGACAAGGAAAAAAACTCTTTTCAGTTTGGGGAAATTACTGGTACCATATCTGTAGGTGACATTGCAGAACTGTTTGGTTTGAATATTGAAGGCCGTGAGATCAACCTTAACCAGAAGAAGAGAAAAGGGGATTCTGATTTCATTAAAAGACGATTCCCTGGAGTGAAAAGGTTGTCCAAGGTGATCCTGGAGCAACAAATCAAAGATGTAGCTAAATTGAGGGGGCTTGAGAATGAAGGTGATTTTGTTAGGTTGGTTTGTCTCTATTTTTGTGTAACACTATTTTTCTGCAATAGTGGCAATGACCTTAGCTGGTTTATAGTACCATACATAGAGGACCTAGATTCAATCTCTCTCTATGCCTGGGCACCCGCAGTGAAGAATTACTTGGACAACTCCCTTTTGAGTATGAATGGTCGGCCTGAAAGCGCTTGTGGTTGTCTCATTGCCCTGTTGGTGAGGTTTATTTCCTATAATTTCTCTTTTGTGTCTGATCTTGATCAAGTATATTGTAGCAAATATGGTTTAGTGGATTTTAATGCTGTTTTGGTTTACGGTGCGTTTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

227

Amino Acids

25.84

Weight (kDa)

6.38

Isoelectric Point (pI)

36.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 32 - 189 3.2e-09 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 155
AccB1I GGYRCC 2 cut(s) 155, 481
AccBSI CCGCTC 1 cut(s) 49
AciI CCGC 2 cut(s) 49, 486
AclWI GGATC 1 cut(s) 292
AcsI RAATTY 1 cut(s) 25
AfaI GTAC 2 cut(s) 157, 438
AfeI AGCGCT 1 cut(s) 544
AgsI TTSAA 3 cut(s) 196, 203, 462
AjnI CCWGG 3 cut(s) 271, 300, 476
AjuI GAANNNNNNNTTGG 2 cut(s) 485, 517
AluBI AGCT 3 cut(s) 38, 326, 426
AluI AGCT 3 cut(s) 38, 326, 426
Alw26I GTCTC 2 cut(s) 380, 560
AlwI GGATC 1 cut(s) 292
Aor51HI AGCGCT 1 cut(s) 544
AoxI GGCC 2 cut(s) 205, 533
ApoI RAATTY 1 cut(s) 25
Asp718I GGTACC 1 cut(s) 155
AspLEI GCGC 1 cut(s) 545
AspS9I GGNCC 1 cut(s) 451
AsuHPI GGTGA 4 cut(s) 182, 307, 365, 583
AvaII GGWCC 1 cut(s) 451
BaeGI GKGCMC 1 cut(s) 484
BanI GGYRCC 2 cut(s) 155, 481
BceAI ACGGC 1 cut(s) 192
BciT130I CCWGG 3 cut(s) 273, 302, 478
BclI TGATCA 1 cut(s) 613
BcoDI GTCTC 2 cut(s) 380, 560
BfaI CTAG 1 cut(s) 455
BfmI CTRYAG 1 cut(s) 165
BfoI RGCGCY 1 cut(s) 546
Bme1390I CCNGG 3 cut(s) 273, 302, 478
Bme18I GGWCC 1 cut(s) 451
BmgT120I GGNCC 1 cut(s) 451
BmiI GGNNCC 2 cut(s) 157, 483
BmrFI CCNGG 3 cut(s) 273, 302, 478
BpmI CTGGAG 2 cut(s) 294, 323
Bpu10I CCTNAGC 1 cut(s) 422
BpuEI CTTGAG 1 cut(s) 362
BsaBI GATNNNNATC 1 cut(s) 612
BsaJI CCNNGG 3 cut(s) 271, 291, 477
Bse1I ACTGG 1 cut(s) 157
Bse3DI GCAATG 3 cut(s) 174, 421, 558
Bse8I GATNNNNATC 1 cut(s) 612
BseBI CCWGG 3 cut(s) 273, 302, 478
BseDI CCNNGG 3 cut(s) 271, 291, 477
BseJI GATNNNNATC 1 cut(s) 612
BseMI GCAATG 3 cut(s) 174, 421, 558
BseNI ACTGG 1 cut(s) 157
BseSI GKGCMC 1 cut(s) 484
BshFI GGCC 2 cut(s) 207, 535
BshNI GGYRCC 2 cut(s) 155, 481
BsmAI GTCTC 2 cut(s) 380, 560
BsnI GGCC 2 cut(s) 207, 535
Bsp1286I GDGCHC 1 cut(s) 484
Bsp143I GATC 4 cut(s) 213, 297, 607, 613
BspACI CCGC 2 cut(s) 49, 486
BspANI GGCC 2 cut(s) 207, 535
BspLI GGNNCC 2 cut(s) 157, 483
BspPI GGATC 1 cut(s) 292
BspT107I GGYRCC 2 cut(s) 155, 481
BsrBI CCGCTC 1 cut(s) 49
BsrDI GCAATG 3 cut(s) 174, 421, 558
BsrI ACTGG 1 cut(s) 157
BssECI CCNNGG 3 cut(s) 271, 291, 477
BssMI GATC 4 cut(s) 213, 297, 607, 613
BssT1I CCWWGG 1 cut(s) 291
Bst2UI CCWGG 3 cut(s) 273, 302, 478
Bst4CI ACNGT 3 cut(s) 18, 186, 671
Bst6I CTCTTC 1 cut(s) 227
BstDEI CTNAG 1 cut(s) 422
BstH2I RGCGCY 1 cut(s) 546
BstHHI GCGC 1 cut(s) 545
BstKTI GATC 4 cut(s) 216, 300, 610, 616
BstMAI GTCTC 2 cut(s) 380, 560
BstMBI GATC 4 cut(s) 213, 297, 607, 613
BstMWI GCNNNNNNNGC 1 cut(s) 411
BstNI CCWGG 3 cut(s) 273, 302, 478
BstSCI CCNGG 3 cut(s) 271, 300, 476
BstSFI CTRYAG 1 cut(s) 165
BstSLI GKGCMC 1 cut(s) 484
BsuRI GGCC 2 cut(s) 207, 535
BtsI GCAGTG 1 cut(s) 495
BtsIMutI CAGTG 1 cut(s) 495
CfoI GCGC 1 cut(s) 545
Cfr13I GGNCC 1 cut(s) 451
Csp6I GTAC 2 cut(s) 156, 437
CviJI RGCY 6 cut(s) 38, 207, 326, 340, 426, 535
CviKI_1 RGCY 6 cut(s) 38, 207, 326, 340, 426, 535
CviQI GTAC 2 cut(s) 156, 437
DdeI CTNAG 1 cut(s) 422
DpnI GATC 4 cut(s) 215, 299, 609, 615
DpnII GATC 4 cut(s) 213, 297, 607, 613
DraI TTTAAA 1 cut(s) 105
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
Eco130I CCWWGG 1 cut(s) 291
Eco47I GGWCC 1 cut(s) 451
Eco47III AGCGCT 1 cut(s) 544
EcoO109I RGGNCCY 1 cut(s) 451
EcoRII CCWGG 3 cut(s) 271, 300, 476
EcoT14I CCWWGG 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 291
FalI AAGNNNNNCTT 2 cut(s) 485, 517
FauI CCCGC 1 cut(s) 493
FbaI TGATCA 1 cut(s) 613
FspBI CTAG 1 cut(s) 455
GlaI GCGC 1 cut(s) 544
GsuI CTGGAG 2 cut(s) 294, 323
HaeII RGCGCY 1 cut(s) 546
HaeIII GGCC 2 cut(s) 207, 535
HhaI GCGC 1 cut(s) 545
Hin6I GCGC 1 cut(s) 543
HinP1I GCGC 1 cut(s) 543
HinfI GANTC 5 cut(s) 8, 62, 245, 267, 458
HphI GGTGA 4 cut(s) 182, 307, 365, 583
Hpy166II GTNNAC 2 cut(s) 12, 667
Hpy188I TCNGA 3 cut(s) 82, 250, 607
Hpy188III TCNNGA 2 cut(s) 22, 611
Hpy8I GTNNAC 2 cut(s) 12, 667
HpyAV CCTTC 2 cut(s) 197, 344
HpyCH4III ACNGT 3 cut(s) 18, 186, 671
HpyCH4V TGCA 2 cut(s) 179, 405
HpyF10VI GCNNNNNNNGC 1 cut(s) 411
HpyF3I CTNAG 1 cut(s) 422
HspAI GCGC 1 cut(s) 543
KpnI GGTACC 1 cut(s) 159
Ksp22I TGATCA 1 cut(s) 613
Kzo9I GATC 4 cut(s) 213, 297, 607, 613
LmnI GCTCC 1 cut(s) 304
MaeI CTAG 1 cut(s) 455
MaeIII GTNAC 2 cut(s) 170, 388
MalI GATC 4 cut(s) 215, 299, 609, 615
MbiI CCGCTC 1 cut(s) 49
MboI GATC 4 cut(s) 213, 297, 607, 613
MboII GAAGA 3 cut(s) 241, 244, 505
MhlI GDGCHC 1 cut(s) 484
MluCI AATT 5 cut(s) 25, 147, 329, 496, 589
MlyI GAGTC 2 cut(s) 17, 56
MnlI CCTC 3 cut(s) 327, 442, 567
MseI TTAA 4 cut(s) 104, 222, 258, 651
MspR9I CCNGG 3 cut(s) 273, 302, 478
MvaI CCWGG 3 cut(s) 273, 302, 478
MwoI GCNNNNNNNGC 1 cut(s) 411
NdeII GATC 4 cut(s) 213, 297, 607, 613
NlaIV GGNNCC 2 cut(s) 157, 483
NmuCI GTSAC 1 cut(s) 170
PfeI GAWTC 3 cut(s) 245, 267, 458
PfoI TCCNGGA 1 cut(s) 300
PleI GAGTC 2 cut(s) 16, 56
PpsI GAGTC 2 cut(s) 16, 56
PpuMI RGGWCCY 1 cut(s) 451
Psp5II RGGWCCY 1 cut(s) 451
Psp6I CCWGG 3 cut(s) 271, 300, 476
PspGI CCWGG 3 cut(s) 271, 300, 476
PspN4I GGNNCC 2 cut(s) 157, 483
PspPI GGNCC 1 cut(s) 451
PspPPI RGGWCCY 1 cut(s) 451
RsaI GTAC 2 cut(s) 157, 438
RsaNI GTAC 2 cut(s) 156, 437
SaqAI TTAA 4 cut(s) 104, 222, 258, 651
Sau3AI GATC 4 cut(s) 213, 297, 607, 613
Sau96I GGNCC 1 cut(s) 451
SchI GAGTC 2 cut(s) 17, 56
ScrFI CCNGG 3 cut(s) 273, 302, 478
SduI GDGCHC 1 cut(s) 484
SfcI CTRYAG 1 cut(s) 165
SinI GGWCC 1 cut(s) 451
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
Sse9I AATT 5 cut(s) 25, 147, 329, 496, 589
SsiI CCGC 2 cut(s) 49, 486
SspI AATATT 1 cut(s) 199
SspMI CTAG 1 cut(s) 455
StyD4I CCNGG 3 cut(s) 271, 300, 476
StyI CCWWGG 1 cut(s) 291
TaaI ACNGT 3 cut(s) 18, 186, 671
TasI AATT 5 cut(s) 25, 147, 329, 496, 589
TfiI GAWTC 3 cut(s) 245, 267, 458
Tru1I TTAA 4 cut(s) 104, 222, 258, 651
Tru9I TTAA 4 cut(s) 104, 222, 258, 651
TscAI CASTG 1 cut(s) 495
TseFI GTSAC 1 cut(s) 170
Tsp45I GTSAC 1 cut(s) 170
TspDTI ATGAA 3 cut(s) 244, 363, 539
TspRI CASTG 1 cut(s) 495
VpaK11BI GGWCC 1 cut(s) 451
XapI RAATTY 1 cut(s) 25
XcmI CCANNNNNNNNNTGG 1 cut(s) 298
XspI CTAG 1 cut(s) 455
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.