FvH4_5g07921

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000441
Physical Location & Seq
Reverse (-)
4603229 .. 4604546
1318 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g07921.t1

Sequence Viewer

Length: 1140 bp
ATGACTGTTGAGATAAGGGAAAATGTTACTGAACTGAAGCTTCAATTGCTAGACAGGACACCATTCAGAAGTTTGTTCAGAGCTTATTATGAACAGCAAGTAATAGAATCTGCTTGTAGGAAGTCTGATATTGACATCGTTGCTGTTTTAAAATGTTTTGTCACGGGAAAAAATGCTTTCACATTTGGGGAAATCAGTGGTACCATATCAGCAGGCAACATTGCAGATATATTTGGTTTGAATGTTGAAGGCCGTGAGATCAACCTGAACCAAAAGAAAAGGAAGGGGGATTCAGAGTTCATTAAAAGACAATTTCCTGGTGATAAAAGGTTGTCAAAGGTGATTTTGGAGAAAAAAATCAAAGATGTTGCAAAACTAAGGGGGCTGGAGAATGAAAGTGATTTTGTTCGGTTGGTTTGTCTATACTTTTGTGTAACATTGTTTTTCTGCAATAGTGGTAATGACCTCAGTTGGTTTATAGTTCCTTACATAGAGGATTTGGAATCAATGTCTCTCTATGCATGGGCACCTGCAGTTAAGAATTACTTGGATACCTCGCTTAGAGGTATGAATGGTTGGCCAGAAAGTGCTTGTGGGTGTCTGATTGCCCTGTTGTTTTGGTTTTGCGAGCGTACCCGGTTCATTGAACCAATTACAGCGCGGGGAGAGATGAAGCCAACATTCCTGAAATGGAATTTGCTGGAGCTGTATGCAAGGATGAAGGTGGTGGATCTGCATGAACTAAAGTCCCCAAGTGCAGTTGAAATACTTAACAAAGAGAAGTATGGGCTAGAAACTACCGGTAGTGAAGAAGAGGGCTCTAAAGAGAAGGGTAAAGATGACATTGACACTAGTAAGATATTCCAATTGTTACCAAGTCAGGACTACCTAGATGATATTGAACCAGGGCCTTCAAGCAATGACGCGATGGACAAAAGGCTTGATGAGTTGACCGCTTTGCTAAAAAATGAACAAGCTCGTAACGAGATTCTTTGTAATGAAAATAAGAGATTGGAGTCAGAGATTGAGATGCTTCGTCGGTCCAAAAATTTGGTTGAGGTTGAGAAGCAGACTTCGAGGACCTTGAGGTCGAGGTCAGAGTGTAAAAAAACCCTCCTTTCTGGTGGACTATATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

380

Amino Acids

43.47

Weight (kDa)

5.72

Isoelectric Point (pI)

54.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PMD PF10536 59 - 235 4.5e-08 Plant mobile domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 538
AasI GACNNNNNNGTC 1 cut(s) 1087
Acc36I ACCTGC 1 cut(s) 538
Acc65I GGTACC 1 cut(s) 200
AccB1I GGYRCC 2 cut(s) 200, 526
AccII CGCG 2 cut(s) 661, 926
AciI CCGC 2 cut(s) 661, 954
AclWI GGATC 1 cut(s) 738
AcoI YGGCCR 1 cut(s) 578
AcsI RAATTY 2 cut(s) 694, 1048
AcuI CTGAAG 1 cut(s) 56
AfaI GTAC 2 cut(s) 202, 634
AgeI ACCGGT 1 cut(s) 800
AgsI TTSAA 7 cut(s) 44, 241, 248, 647, 764, 902, 915
AhlI ACTAGT 1 cut(s) 851
AjnI CCWGG 2 cut(s) 316, 904
AloI GAACNNNNNNTCC 2 cut(s) 281, 313
AluBI AGCT 4 cut(s) 40, 83, 706, 977
AluI AGCT 4 cut(s) 40, 83, 706, 977
Alw26I GTCTC 1 cut(s) 516
AlwI GGATC 1 cut(s) 738
AoxI GGCC 3 cut(s) 250, 578, 908
ApoI RAATTY 2 cut(s) 694, 1048
AsiGI ACCGGT 1 cut(s) 800
Asp718I GGTACC 1 cut(s) 200
AspLEI GCGC 1 cut(s) 661
AspS9I GGNCC 3 cut(s) 908, 1041, 1080
AsuC2I CCSGG 1 cut(s) 637
AsuHPI GGTGA 2 cut(s) 332, 352
AvaII GGWCC 2 cut(s) 1041, 1080
BaeGI GKGCMC 1 cut(s) 529
BalI TGGCCA 1 cut(s) 580
BanI GGYRCC 2 cut(s) 200, 526
BanII GRGCYC 1 cut(s) 821
BccI CCATC 1 cut(s) 922
BceAI ACGGC 1 cut(s) 237
BciT130I CCWGG 2 cut(s) 318, 906
BciVI GTATCC 1 cut(s) 544
BcnI CCSGG 1 cut(s) 637
BcoDI GTCTC 1 cut(s) 516
BcuI ACTAGT 1 cut(s) 851
BfaI CTAG 4 cut(s) 50, 791, 852, 890
BfmI CTRYAG 1 cut(s) 531
BfuAI ACCTGC 1 cut(s) 538
BfuI GTATCC 1 cut(s) 544
Bme1390I CCNGG 3 cut(s) 318, 637, 906
Bme18I GGWCC 2 cut(s) 1041, 1080
BmgT120I GGNCC 3 cut(s) 908, 1041, 1080
BmiI GGNNCC 2 cut(s) 202, 528
BmrFI CCNGG 3 cut(s) 318, 637, 906
BmsI GCATC 1 cut(s) 1020
BpmI CTGGAG 2 cut(s) 407, 722
BpuEI CTTGAG 1 cut(s) 1105
BpuMI CCSGG 1 cut(s) 637
BsaJI CCNNGG 1 cut(s) 905
BsaWI WCCGGW 1 cut(s) 800
Bse118I RCCGGY 1 cut(s) 800
Bse3DI GCAATG 2 cut(s) 219, 925
BseBI CCWGG 2 cut(s) 318, 906
BseDI CCNNGG 1 cut(s) 905
BseGI GGATG 1 cut(s) 723
BseMI GCAATG 2 cut(s) 219, 925
BseMII CTCAG 1 cut(s) 481
BseSI GKGCMC 1 cut(s) 529
BsgI GTGCAG 1 cut(s) 777
Bsh1236I CGCG 2 cut(s) 661, 926
BshFI GGCC 3 cut(s) 252, 580, 910
BshNI GGYRCC 2 cut(s) 200, 526
BshTI ACCGGT 1 cut(s) 800
BsiSI CCGG 2 cut(s) 637, 801
BslFI GGGAC 1 cut(s) 733
BsmAI GTCTC 1 cut(s) 516
BsmFI GGGAC 1 cut(s) 733
BsnI GGCC 3 cut(s) 252, 580, 910
Bsp1286I GDGCHC 2 cut(s) 529, 821
Bsp143I GATC 2 cut(s) 258, 730
BspACI CCGC 2 cut(s) 661, 954
BspANI GGCC 3 cut(s) 252, 580, 910
BspCNI CTCAG 1 cut(s) 480
BspFNI CGCG 2 cut(s) 661, 926
BspLI GGNNCC 2 cut(s) 202, 528
BspMAI CTGCAG 1 cut(s) 535
BspMI ACCTGC 1 cut(s) 538
BspPI GGATC 1 cut(s) 738
BspT107I GGYRCC 2 cut(s) 200, 526
BsrDI GCAATG 2 cut(s) 219, 925
BsrFI RCCGGY 1 cut(s) 800
BssAI RCCGGY 1 cut(s) 800
BssECI CCNNGG 1 cut(s) 905
BssMI GATC 2 cut(s) 258, 730
Bst2UI CCWGG 2 cut(s) 318, 906
Bst4CI ACNGT 1 cut(s) 7
Bst6I CTCTTC 1 cut(s) 807
BstC8I GCNNGC 2 cut(s) 214, 629
BstDEI CTNAG 3 cut(s) 377, 467, 560
BstF5I GGATG 1 cut(s) 723
BstFNI CGCG 2 cut(s) 661, 926
BstHHI GCGC 1 cut(s) 661
BstKTI GATC 2 cut(s) 261, 733
BstMAI GTCTC 1 cut(s) 516
BstMBI GATC 2 cut(s) 258, 730
BstMWI GCNNNNNNNGC 1 cut(s) 46
BstNI CCWGG 2 cut(s) 318, 906
BstSCI CCNGG 3 cut(s) 316, 635, 904
BstSFI CTRYAG 1 cut(s) 531
BstSLI GKGCMC 1 cut(s) 529
BstUI CGCG 2 cut(s) 661, 926
BstX2I RGATCY 1 cut(s) 730
BstXI CCANNNNNNTGG 1 cut(s) 1051
BstYI RGATCY 1 cut(s) 730
BsuI GTATCC 1 cut(s) 544
BsuRI GGCC 3 cut(s) 252, 580, 910
BtgZI GCGATG 1 cut(s) 941
BtsCI GGATG 1 cut(s) 723
BtsIMutI CAGTG 1 cut(s) 202
BveI ACCTGC 1 cut(s) 538
Cac8I GCNNGC 2 cut(s) 214, 629
CfoI GCGC 1 cut(s) 661
Cfr10I RCCGGY 1 cut(s) 800
Cfr13I GGNCC 3 cut(s) 908, 1041, 1080
CseI GACGC 1 cut(s) 932
Csp6I GTAC 2 cut(s) 201, 633
CspAI ACCGGT 1 cut(s) 800
CviAII CATG 2 cut(s) 522, 737
CviQI GTAC 2 cut(s) 201, 633
DdeI CTNAG 3 cut(s) 377, 467, 560
DpnI GATC 2 cut(s) 260, 732
DpnII GATC 2 cut(s) 258, 730
DraI TTTAAA 1 cut(s) 150
DrdI GACNNNNNNGTC 1 cut(s) 1087
DseDI GACNNNNNNGTC 1 cut(s) 1087
EaeI YGGCCR 1 cut(s) 578
Eam1104I CTCTTC 1 cut(s) 807
EarI CTCTTC 1 cut(s) 807
Eco24I GRGCYC 1 cut(s) 821
Eco47I GGWCC 2 cut(s) 1041, 1080
Eco57I CTGAAG 1 cut(s) 56
EcoO109I RGGNCCY 2 cut(s) 908, 1080
EcoRII CCWGG 2 cut(s) 316, 904
EcoT22I ATGCAT 1 cut(s) 523
EcoT38I GRGCYC 1 cut(s) 821
FaeI CATG 2 cut(s) 525, 740
FalI AAGNNNNNCTT 2 cut(s) 530, 562
FaqI GGGAC 1 cut(s) 733
FatI CATG 2 cut(s) 521, 736
FauI CCCGC 1 cut(s) 654
FokI GGATG 1 cut(s) 730
FriOI GRGCYC 1 cut(s) 821
FspBI CTAG 4 cut(s) 50, 791, 852, 890
GlaI GCGC 1 cut(s) 660
GsuI CTGGAG 2 cut(s) 407, 722
HaeIII GGCC 3 cut(s) 252, 580, 910
HapII CCGG 2 cut(s) 637, 801
HgaI GACGC 1 cut(s) 932
HhaI GCGC 1 cut(s) 661
Hin1II CATG 2 cut(s) 525, 740
Hin6I GCGC 1 cut(s) 659
HinP1I GCGC 1 cut(s) 659
HincII GTYRAC 1 cut(s) 951
HindII GTYRAC 1 cut(s) 951
HindIII AAGCTT 1 cut(s) 38
HinfI GANTC 5 cut(s) 107, 290, 503, 988, 1016
HpaII CCGG 2 cut(s) 637, 801
HphI GGTGA 2 cut(s) 332, 352
Hpy166II GTNNAC 2 cut(s) 951, 1127
Hpy188I TCNGA 7 cut(s) 68, 80, 127, 295, 603, 1021, 1099
Hpy188III TCNNGA 2 cut(s) 685, 881
Hpy8I GTNNAC 2 cut(s) 951, 1127
Hpy99I CGWCG 1 cut(s) 1041
HpyAV CCTTC 5 cut(s) 242, 277, 715, 823, 921
HpyCH4III ACNGT 1 cut(s) 7
HpyCH4V TGCA 8 cut(s) 224, 371, 450, 521, 533, 713, 736, 758
HpyF10VI GCNNNNNNNGC 1 cut(s) 46
HpyF3I CTNAG 3 cut(s) 377, 467, 560
Hsp92II CATG 2 cut(s) 525, 740
HspAI GCGC 1 cut(s) 659
KpnI GGTACC 1 cut(s) 204
Kzo9I GATC 2 cut(s) 258, 730
LmnI GCTCC 1 cut(s) 703
LweI GCATC 1 cut(s) 1020
MaeI CTAG 4 cut(s) 50, 791, 852, 890
MaeIII GTNAC 5 cut(s) 25, 160, 433, 870, 980
MalI GATC 2 cut(s) 260, 732
MboI GATC 2 cut(s) 258, 730
MboII GAAGA 2 cut(s) 821, 824
MfeI CAATTG 2 cut(s) 44, 866
MflI RGATCY 1 cut(s) 730
MhlI GDGCHC 2 cut(s) 529, 821
MlsI TGGCCA 1 cut(s) 580
MluCI AATT 7 cut(s) 44, 311, 541, 651, 694, 866, 1048
MluNI TGGCCA 1 cut(s) 580
MlyI GAGTC 1 cut(s) 1025
Mox20I TGGCCA 1 cut(s) 580
Mph1103I ATGCAT 1 cut(s) 523
MscI TGGCCA 1 cut(s) 580
MseI TTAA 4 cut(s) 149, 303, 537, 771
Msp20I TGGCCA 1 cut(s) 580
MspI CCGG 2 cut(s) 637, 801
MspR9I CCNGG 3 cut(s) 318, 637, 906
MunI CAATTG 2 cut(s) 44, 866
MvaI CCWGG 2 cut(s) 318, 906
MvnI CGCG 2 cut(s) 661, 926
MwoI GCNNNNNNNGC 1 cut(s) 46
NciI CCSGG 1 cut(s) 637
NdeII GATC 2 cut(s) 258, 730
NlaIII CATG 2 cut(s) 525, 740
NlaIV GGNNCC 2 cut(s) 202, 528
NmuCI GTSAC 1 cut(s) 160
NsiI ATGCAT 1 cut(s) 523
PaqCI CACCTGC 1 cut(s) 538
PfeI GAWTC 4 cut(s) 107, 290, 503, 988
PinAI ACCGGT 1 cut(s) 800
PleI GAGTC 1 cut(s) 1024
PpsI GAGTC 1 cut(s) 1024
PpuMI RGGWCCY 1 cut(s) 1080
Psp5II RGGWCCY 1 cut(s) 1080
Psp6I CCWGG 2 cut(s) 316, 904
PspGI CCWGG 2 cut(s) 316, 904
PspN4I GGNNCC 2 cut(s) 202, 528
PspPI GGNCC 3 cut(s) 908, 1041, 1080
PspPPI RGGWCCY 1 cut(s) 1080
PstI CTGCAG 1 cut(s) 535
PsuI RGATCY 1 cut(s) 730
RsaI GTAC 2 cut(s) 202, 634
RsaNI GTAC 2 cut(s) 201, 633
SaqAI TTAA 4 cut(s) 149, 303, 537, 771
Sau3AI GATC 2 cut(s) 258, 730
Sau96I GGNCC 3 cut(s) 908, 1041, 1080
SchI GAGTC 1 cut(s) 1025
ScrFI CCNGG 3 cut(s) 318, 637, 906
SduI GDGCHC 2 cut(s) 529, 821
SfaNI GCATC 1 cut(s) 1020
SfcI CTRYAG 1 cut(s) 531
SinI GGWCC 2 cut(s) 1041, 1080
SmlI CTYRAG 1 cut(s) 1084
SmoI CTYRAG 1 cut(s) 1084
SpeI ACTAGT 1 cut(s) 851
Sse9I AATT 7 cut(s) 44, 311, 541, 651, 694, 866, 1048
SsiI CCGC 2 cut(s) 661, 954
SspMI CTAG 4 cut(s) 50, 791, 852, 890
StyD4I CCNGG 3 cut(s) 316, 635, 904
TaaI ACNGT 1 cut(s) 7
TaqI TCGA 2 cut(s) 1076, 1091
TaqII GACCGA 1 cut(s) 1029
TasI AATT 7 cut(s) 44, 311, 541, 651, 694, 866, 1048
TfiI GAWTC 4 cut(s) 107, 290, 503, 988
Tru1I TTAA 4 cut(s) 149, 303, 537, 771
Tru9I TTAA 4 cut(s) 149, 303, 537, 771
TscAI CASTG 1 cut(s) 202
TseFI GTSAC 1 cut(s) 160
Tsp45I GTSAC 1 cut(s) 160
TspRI CASTG 1 cut(s) 202
VpaK11BI GGWCC 2 cut(s) 1041, 1080
XapI RAATTY 2 cut(s) 694, 1048
XspI CTAG 4 cut(s) 50, 791, 852, 890
Zsp2I ATGCAT 1 cut(s) 523
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.