pycom06g12100

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr6
OG0000441
Physical Location & Seq
Forward (+)
17263486 .. 17264607
1122 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom06g12100.2

Sequence Viewer

Length: 813 bp
ATGGTTGGGTACGTTAAGGATATTACCAAGATGAAGGATTATGCGTGCGCTGTAGCAGTAAAGAATTGGTTGTTGGGCACAATTGATAATATGGGAGAACGTTACGAAAGTGTAACTGGTTGTGTAATTGAATTATTGTTCTTGTTTTGTGAGCTTACTCATTTGATCAATCCAATCAGAGGAAGGGAAAATATGCCACTTAAGGTTGTTAAGTGGAATTTGTCGGAATTGTATGCAAAGATGGAAATTATGAAGATCCATGAGTTTGAGGAAGTTGTACAGGTAGGTGAGGGCAGTCCAAAAACACCTGAAAAAGAGAAGAAAATCATACAACTGCGTTCACATGGTGGGGGGATAAATGTGGAGCCTCAGAAAGTGTCAGATGAAGAATTTCTCCCAACATTTGATATACTGCCAGCAGAATTTATGGAAAACAACTTGGGAGAGCCTTCAAATAGTAAGGCAAACCTTAATGACTTGGAGAGAAAATTACAAGAGATGAGTCTTTTGGTGGAGGACTACCGTTCAGAAATTATGAAACTTACTATTGAAAACGAGAATCTGAAGGAGGAGCTAAAATGTAAGGAAAATTACATAGTGAAAGACAAATCTCCAAAACAAAACTCAATGATTTTGCGGGTGAAATCAAAACCAAGGAAGCCCTTGTTGATGCCAGATTACAAGTATGATGCTTGTGTTAATAAAAAAATGGTAGTTCATATGGATAAAAATTGTGTTGGTTCACGAGCAATTCAAATGCATGAATATGGGAACACAAAAATACGGGCACCGGTGAAGACAATAGCTGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

271

Amino Acids

31.05

Weight (kDa)

7.57

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 787
AciI CCGC 1 cut(s) 637
AclI AACGTT 1 cut(s) 100
AclWI GGATC 1 cut(s) 250
AcsI RAATTY 3 cut(s) 217, 389, 422
AcuI CTGAAG 1 cut(s) 584
AdeI CACNNNGTG 1 cut(s) 347
AfaI GTAC 2 cut(s) 11, 279
AfiI CCNNNNNNNGG 1 cut(s) 179
AflII CTTAAG 1 cut(s) 200
AgeI ACCGGT 1 cut(s) 790
AgsI TTSAA 4 cut(s) 131, 453, 551, 755
AjuI GAANNNNNNNTTGG 2 cut(s) 56, 88
AluBI AGCT 3 cut(s) 154, 574, 806
AluI AGCT 3 cut(s) 154, 574, 806
AlwI GGATC 1 cut(s) 250
ApoI RAATTY 3 cut(s) 217, 389, 422
AsiGI ACCGGT 1 cut(s) 790
Asp700I GAANNNNTTC 1 cut(s) 390
AspLEI GCGC 1 cut(s) 50
AsuHPI GGTGA 3 cut(s) 299, 652, 805
BaeGI GKGCMC 2 cut(s) 80, 790
BanI GGYRCC 1 cut(s) 787
BauI CACGAG 1 cut(s) 744
BbsI GAAGAC 1 cut(s) 803
BccI CCATC 1 cut(s) 235
BclI TGATCA 1 cut(s) 165
BfmI CTRYAG 1 cut(s) 51
BfrI CTTAAG 1 cut(s) 200
BmiI GGNNCC 2 cut(s) 366, 789
BmsI GCATC 2 cut(s) 660, 679
BpiI GAAGAC 1 cut(s) 803
BsaJI CCNNGG 1 cut(s) 653
BsaWI WCCGGW 1 cut(s) 790
Bsc4I CCNNNNNNNGG 1 cut(s) 179
Bse118I RCCGGY 1 cut(s) 790
Bse1I ACTGG 1 cut(s) 121
BseDI CCNNGG 1 cut(s) 653
BseLI CCNNNNNNNGG 1 cut(s) 179
BseMII CTCAG 1 cut(s) 383
BseNI ACTGG 1 cut(s) 121
BseRI GAGGAG 1 cut(s) 584
BseSI GKGCMC 2 cut(s) 80, 790
BshNI GGYRCC 1 cut(s) 787
BshTI ACCGGT 1 cut(s) 790
BsiSI CCGG 1 cut(s) 791
BslI CCNNNNNNNGG 1 cut(s) 179
Bsp1286I GDGCHC 2 cut(s) 80, 790
Bsp1407I TGTACA 1 cut(s) 277
Bsp143I GATC 2 cut(s) 165, 255
BspACI CCGC 1 cut(s) 637
BspCNI CTCAG 1 cut(s) 382
BspLI GGNNCC 2 cut(s) 366, 789
BspPI GGATC 1 cut(s) 250
BspT107I GGYRCC 1 cut(s) 787
BspTI CTTAAG 1 cut(s) 200
BsrFI RCCGGY 1 cut(s) 790
BsrGI TGTACA 1 cut(s) 277
BsrI ACTGG 1 cut(s) 121
BssAI RCCGGY 1 cut(s) 790
BssECI CCNNGG 1 cut(s) 653
BssMI GATC 2 cut(s) 165, 255
BssSI CACGAG 1 cut(s) 744
BssT1I CCWWGG 1 cut(s) 653
Bst2BI CACGAG 1 cut(s) 744
Bst4CI ACNGT 1 cut(s) 524
BstAFI CTTAAG 1 cut(s) 200
BstAUI TGTACA 1 cut(s) 277
BstC8I GCNNGC 2 cut(s) 46, 417
BstDEI CTNAG 1 cut(s) 369
BstHHI GCGC 1 cut(s) 50
BstKTI GATC 2 cut(s) 168, 258
BstMBI GATC 2 cut(s) 165, 255
BstSFI CTRYAG 1 cut(s) 51
BstSLI GKGCMC 2 cut(s) 80, 790
BstV2I GAAGAC 1 cut(s) 803
BstX2I RGATCY 1 cut(s) 255
BstYI RGATCY 1 cut(s) 255
Cac8I GCNNGC 2 cut(s) 46, 417
CfoI GCGC 1 cut(s) 50
Cfr10I RCCGGY 1 cut(s) 790
Csp6I GTAC 2 cut(s) 10, 278
CspAI ACCGGT 1 cut(s) 790
CviAII CATG 3 cut(s) 260, 344, 761
CviJI RGCY 6 cut(s) 154, 367, 448, 574, 661, 806
CviKI_1 RGCY 6 cut(s) 154, 367, 448, 574, 661, 806
CviQI GTAC 2 cut(s) 10, 278
DdeI CTNAG 1 cut(s) 369
DpnI GATC 2 cut(s) 167, 257
DpnII GATC 2 cut(s) 165, 255
DraIII CACNNNGTG 1 cut(s) 347
Eco130I CCWWGG 1 cut(s) 653
Eco57I CTGAAG 1 cut(s) 584
EcoT14I CCWWGG 1 cut(s) 653
EcoT22I ATGCAT 1 cut(s) 762
ErhI CCWWGG 1 cut(s) 653
FaeI CATG 3 cut(s) 263, 347, 764
FatI CATG 3 cut(s) 259, 343, 760
FauI CCCGC 1 cut(s) 630
FauNDI CATATG 1 cut(s) 720
FbaI TGATCA 1 cut(s) 165
GlaI GCGC 1 cut(s) 49
HapII CCGG 1 cut(s) 791
HhaI GCGC 1 cut(s) 50
Hin1II CATG 3 cut(s) 263, 347, 764
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HinfI GANTC 2 cut(s) 502, 559
HpaII CCGG 1 cut(s) 791
HphI GGTGA 3 cut(s) 299, 652, 805
Hpy166II GTNNAC 2 cut(s) 341, 743
Hpy188I TCNGA 6 cut(s) 179, 226, 372, 382, 529, 564
Hpy188III TCNNGA 1 cut(s) 744
Hpy8I GTNNAC 2 cut(s) 341, 743
HpyAV CCTTC 4 cut(s) 28, 177, 459, 559
HpyCH4III ACNGT 1 cut(s) 524
HpyCH4IV ACGT 2 cut(s) 12, 100
HpyCH4V TGCA 2 cut(s) 236, 760
HpyF3I CTNAG 1 cut(s) 369
HpySE526I ACGT 2 cut(s) 12, 100
Hsp92II CATG 3 cut(s) 263, 347, 764
HspAI GCGC 1 cut(s) 48
Ksp22I TGATCA 1 cut(s) 165
Kzo9I GATC 2 cut(s) 165, 255
LmnI GCTCC 2 cut(s) 364, 571
LpnPI CCDG 6 cut(s) 102, 266, 321, 429, 687, 804
LweI GCATC 2 cut(s) 660, 679
MaeII ACGT 2 cut(s) 12, 100
MaeIII GTNAC 2 cut(s) 101, 112
MalI GATC 2 cut(s) 167, 257
MboI GATC 2 cut(s) 165, 255
MboII GAAGA 4 cut(s) 265, 331, 398, 808
MfeI CAATTG 1 cut(s) 81
MflI RGATCY 1 cut(s) 255
MhlI GDGCHC 2 cut(s) 80, 790
MlyI GAGTC 1 cut(s) 511
MmeI TCCRAC 1 cut(s) 204
MnlI CCTC 6 cut(s) 173, 262, 283, 378, 508, 562
Mph1103I ATGCAT 1 cut(s) 762
MroXI GAANNNNTTC 1 cut(s) 390
MseI TTAA 5 cut(s) 15, 201, 210, 471, 699
MslI CAYNNNNRTG 1 cut(s) 765
MspCI CTTAAG 1 cut(s) 200
MspI CCGG 1 cut(s) 791
MunI CAATTG 1 cut(s) 81
NdeI CATATG 1 cut(s) 720
NdeII GATC 2 cut(s) 165, 255
NlaIII CATG 3 cut(s) 263, 347, 764
NlaIV GGNNCC 2 cut(s) 366, 789
NsiI ATGCAT 1 cut(s) 762
PdmI GAANNNNTTC 1 cut(s) 390
PfeI GAWTC 1 cut(s) 559
PinAI ACCGGT 1 cut(s) 790
PleI GAGTC 1 cut(s) 510
PpsI GAGTC 1 cut(s) 510
Psp1406I AACGTT 1 cut(s) 100
PspN4I GGNNCC 2 cut(s) 366, 789
PsuI RGATCY 1 cut(s) 255
RsaI GTAC 2 cut(s) 11, 279
RsaNI GTAC 2 cut(s) 10, 278
RseI CAYNNNNRTG 1 cut(s) 765
SaqAI TTAA 5 cut(s) 15, 201, 210, 471, 699
Sau3AI GATC 2 cut(s) 165, 255
SchI GAGTC 1 cut(s) 511
SduI GDGCHC 2 cut(s) 80, 790
SfaNI GCATC 2 cut(s) 660, 679
SfcI CTRYAG 1 cut(s) 51
SgrAI CRCCGGYG 1 cut(s) 790
SmiMI CAYNNNNRTG 1 cut(s) 765
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
SsiI CCGC 1 cut(s) 637
StyI CCWWGG 1 cut(s) 653
TaaI ACNGT 1 cut(s) 524
TaiI ACGT 2 cut(s) 15, 103
TatI WGTACW 1 cut(s) 277
TfiI GAWTC 1 cut(s) 559
Tru1I TTAA 5 cut(s) 15, 201, 210, 471, 699
Tru9I TTAA 5 cut(s) 15, 201, 210, 471, 699
TspDTI ATGAA 6 cut(s) 47, 266, 399, 551, 707, 777
Vha464I CTTAAG 1 cut(s) 200
XapI RAATTY 3 cut(s) 217, 389, 422
XmnI GAANNNNTTC 1 cut(s) 390
Zsp2I ATGCAT 1 cut(s) 762
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.