Rh5AG009200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0000441
Physical Location & Seq
Reverse (-)
643559 .. 646581
3023 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG009200.1

Sequence Viewer

Length: 399 bp
ATGGCAAAGAAGGAGTATTCCTATCTAGAGTACAGGTGTGATTTATTGAAGTTTGGTGAGAAGCATTTAGTTGAAATTGGGACTACAAGCGGTACAAAATCAAGAGAACGAAAAAATGCGACTGATTTTGATCCTAACAAGATGTTCCAGCTGTTACTGACCCAATTCTACTTGGAAGAAAGCCAAGAGGGACCTTCAAGCAATGAGAATGATATACCTGAATTGGAGAAAAAGGTTCAAGAGTTTGCTGATTTGCTGGAGGTTGAGCGAGCCAAAAATGAGACTCTTAGTGTGGAAAATTTGAAACTATGCATGGAGATAGGATTGCTCAGGCAAGCCATTCCTAAAGATGAGATTCCAAATGGGAATTCAAGGAAGTTGAGGACAAAAGAACTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

132

Amino Acids

15.32

Weight (kDa)

5.22

Isoelectric Point (pI)

35.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 90
AclWI GGATC 1 cut(s) 125
AcsI RAATTY 2 cut(s) 298, 367
AfaI GTAC 2 cut(s) 32, 94
AgsI TTSAA 6 cut(s) 49, 74, 198, 239, 304, 372
AjuI GAANNNNNNNTTGG 2 cut(s) 352, 384
AluBI AGCT 1 cut(s) 151
AluI AGCT 1 cut(s) 151
Alw26I GTCTC 1 cut(s) 275
AlwI GGATC 1 cut(s) 125
ApoI RAATTY 2 cut(s) 298, 367
AspS9I GGNCC 1 cut(s) 191
AsuHPI GGTGA 1 cut(s) 68
AvaII GGWCC 1 cut(s) 191
BcoDI GTCTC 1 cut(s) 275
BfaI CTAG 1 cut(s) 26
Bme18I GGWCC 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 1 cut(s) 192
BpmI CTGGAG 1 cut(s) 278
Bpu10I CCTNAGC 1 cut(s) 329
BsaBI GATNNNNATC 1 cut(s) 129
Bse3DI GCAATG 1 cut(s) 208
Bse8I GATNNNNATC 1 cut(s) 129
BseJI GATNNNNATC 1 cut(s) 129
BseMI GCAATG 1 cut(s) 208
BseMII CTCAG 1 cut(s) 343
BslFI GGGAC 2 cut(s) 94, 204
BsmAI GTCTC 1 cut(s) 275
BsmFI GGGAC 2 cut(s) 94, 204
Bsp143I GATC 1 cut(s) 130
BspACI CCGC 1 cut(s) 90
BspCNI CTCAG 1 cut(s) 342
BspLI GGNNCC 1 cut(s) 192
BspPI GGATC 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 208
BssMI GATC 1 cut(s) 130
BstC8I GCNNGC 2 cut(s) 270, 336
BstDEI CTNAG 2 cut(s) 287, 329
BstKTI GATC 1 cut(s) 133
BstMAI GTCTC 1 cut(s) 275
BstMBI GATC 1 cut(s) 130
Cac8I GCNNGC 2 cut(s) 270, 336
Cfr13I GGNCC 1 cut(s) 191
Csp6I GTAC 2 cut(s) 31, 93
CviAII CATG 1 cut(s) 313
CviJI RGCY 4 cut(s) 151, 183, 272, 338
CviKI_1 RGCY 4 cut(s) 151, 183, 272, 338
CviQI GTAC 2 cut(s) 31, 93
DdeI CTNAG 2 cut(s) 287, 329
DpnI GATC 1 cut(s) 132
DpnII GATC 1 cut(s) 130
Eco47I GGWCC 1 cut(s) 191
EcoO109I RGGNCCY 1 cut(s) 191
EcoRI GAATTC 1 cut(s) 367
EcoT22I ATGCAT 1 cut(s) 314
FaeI CATG 1 cut(s) 316
FaiI YATR 4 cut(s) 215, 310, 314, 397
FaqI GGGAC 2 cut(s) 94, 204
FatI CATG 1 cut(s) 312
FspBI CTAG 1 cut(s) 26
GsuI CTGGAG 1 cut(s) 278
Hin1II CATG 1 cut(s) 316
HinfI GANTC 2 cut(s) 283, 355
HphI GGTGA 1 cut(s) 68
Hpy188III TCNNGA 3 cut(s) 26, 102, 239
HpyAV CCTTC 2 cut(s) 4, 204
HpyCH4V TGCA 1 cut(s) 312
HpyF3I CTNAG 2 cut(s) 287, 329
Hsp92II CATG 1 cut(s) 316
Kzo9I GATC 1 cut(s) 130
LpnPI CCDG 5 cut(s) 19, 161, 231, 242, 316
MaeI CTAG 1 cut(s) 26
MaeIII GTNAC 1 cut(s) 153
MalI GATC 1 cut(s) 132
MboI GATC 1 cut(s) 130
MboII GAAGA 1 cut(s) 188
MluCI AATT 5 cut(s) 75, 164, 221, 298, 367
MlyI GAGTC 1 cut(s) 277
MnlI CCTC 3 cut(s) 181, 253, 375
Mph1103I ATGCAT 1 cut(s) 314
MspA1I CMGCKG 1 cut(s) 151
NdeII GATC 1 cut(s) 130
NlaIII CATG 1 cut(s) 316
NlaIV GGNNCC 1 cut(s) 192
NsiI ATGCAT 1 cut(s) 314
PfeI GAWTC 1 cut(s) 355
PleI GAGTC 1 cut(s) 277
PpsI GAGTC 1 cut(s) 277
PpuMI RGGWCCY 1 cut(s) 191
Psp5II RGGWCCY 1 cut(s) 191
PspN4I GGNNCC 1 cut(s) 192
PspPI GGNCC 1 cut(s) 191
PspPPI RGGWCCY 1 cut(s) 191
PvuII CAGCTG 1 cut(s) 151
RsaI GTAC 2 cut(s) 32, 94
RsaNI GTAC 2 cut(s) 31, 93
Sau3AI GATC 1 cut(s) 130
Sau96I GGNCC 1 cut(s) 191
SchI GAGTC 1 cut(s) 277
SetI ASST 6 cut(s) 38, 153, 196, 220, 237, 264
SinI GGWCC 1 cut(s) 191
Sse9I AATT 5 cut(s) 75, 164, 221, 298, 367
SsiI CCGC 1 cut(s) 90
SspMI CTAG 1 cut(s) 26
TasI AATT 5 cut(s) 75, 164, 221, 298, 367
TatI WGTACW 1 cut(s) 30
TfiI GAWTC 1 cut(s) 355
VpaK11BI GGWCC 1 cut(s) 191
XapI RAATTY 2 cut(s) 298, 367
XbaI TCTAGA 1 cut(s) 25
XspI CTAG 1 cut(s) 26
Zsp2I ATGCAT 1 cut(s) 314
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.