Rh7DG258200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000441
Physical Location & Seq
Reverse (-)
27113834 .. 27115442
1609 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG258200.1

Sequence Viewer

Length: 852 bp
ATGGTCGCAAAACAAATCCTAGTTCCTCCCCTGGAGGTCTTTCTTGAATTCATCTGGGTACCGCTATCAGAGGTGCTTTATGGCAAAGAAGGAGTATCCCTATCTAGAGTACAGACTCTCTTCATTGAACCGATGAGAGGAAGGGAACAAATGGAACCGAAAATGGTGAAATGGAATTTGCTGGAACTTTATGCTAGGATGAAAGTGGTCTCTATTCTTAAGATAGAGGTAAAGGAGAGAGATGAGGACCAGAGTACTAATGTTGTGCCTAGTGGTGAGAAGCATTTAGTTGAAATTGGGACTACAAGCGGTACAAAATCAAGAGAACGAAAAAATGCGACTGATTTTGATCCCAACAAGATGTTCCAGCTGTTACCGACCCAATTCTACTTGGAAGAAAGCCAAGAGGGACCTTCAAGCAATGAGAATGATATACCTGAATTGGAGAAAAGGGTTCAAGAGTTTGCTGATTTGCTGGAGGTTGAGCGAGCCAAAAATGAGACTCTTAGTGCTGAAAATTTGAAACTGTGCATGGAGATAGGATTGCTCAGGCAAGTCATTCCTCAAGATGAGATTCCAAATGGGAATTCAAGGAAGTTGAGGACAAAAGAACTATGTAAAAAACCATCATTCCTTGAAGGTTATATCATTGGCGACATTAGAGCCAAAAGAGGTAAGGAAAAGATCATTGATGAAATAGGTGATGCTGTTGTGGAAGAACCAGCTGTGAAGAAGGAGAAGAAACAGATTGTTGCGCAACAAATAGGTGTGAGAAGGTTAAGGGTTGGAAAGTGTATGTCCCAGGTAAATGCAGAAAAGCTCAAGGAATATTTGTCCAAAGCTAGCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

283

Amino Acids

32.41

Weight (kDa)

7.6

Isoelectric Point (pI)

48.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 756
Acc36I ACCTGC 1 cut(s) 837
Acc65I GGTACC 1 cut(s) 58
AccB1I GGYRCC 1 cut(s) 58
AciI CCGC 2 cut(s) 62, 309
AclWI GGATC 1 cut(s) 344
AcsI RAATTY 4 cut(s) 47, 175, 517, 586
AfaI GTAC 4 cut(s) 60, 111, 256, 313
AfiI CCNNNNNNNGG 1 cut(s) 137
AflII CTTAAG 1 cut(s) 218
AgsI TTSAA 8 cut(s) 47, 128, 293, 417, 458, 523, 591, 638
AjnI CCWGG 2 cut(s) 30, 801
AjuI GAANNNNNNNTTGG 4 cut(s) 347, 379, 571, 603
AluBI AGCT 4 cut(s) 370, 725, 820, 842
AluI AGCT 4 cut(s) 370, 725, 820, 842
Alw26I GTCTC 2 cut(s) 214, 494
AlwI GGATC 1 cut(s) 344
ApoI RAATTY 4 cut(s) 47, 175, 517, 586
Asp718I GGTACC 1 cut(s) 58
AspLEI GCGC 1 cut(s) 757
AspS9I GGNCC 2 cut(s) 247, 410
AsuHPI GGTGA 3 cut(s) 178, 287, 713
AsuNHI GCTAGC 1 cut(s) 842
AvaII GGWCC 2 cut(s) 247, 410
BanI GGYRCC 1 cut(s) 58
BccI CCATC 1 cut(s) 634
BciT130I CCWGG 2 cut(s) 32, 803
BciVI GTATCC 1 cut(s) 106
BcoDI GTCTC 2 cut(s) 214, 494
BfaI CTAG 5 cut(s) 20, 105, 195, 270, 843
BfrI CTTAAG 1 cut(s) 218
BfuAI ACCTGC 1 cut(s) 837
BfuI GTATCC 1 cut(s) 106
BmcAI AGTACT 1 cut(s) 256
Bme1390I CCNGG 2 cut(s) 32, 803
Bme18I GGWCC 2 cut(s) 247, 410
BmgT120I GGNCC 2 cut(s) 247, 410
BmiI GGNNCC 3 cut(s) 60, 156, 411
BmrFI CCNGG 2 cut(s) 32, 803
BmsI GCATC 1 cut(s) 694
BmtI GCTAGC 1 cut(s) 846
BpmI CTGGAG 2 cut(s) 53, 497
Bpu10I CCTNAGC 1 cut(s) 548
BpuEI CTTGAG 2 cut(s) 549, 806
BsaBI GATNNNNATC 1 cut(s) 348
BsaI GGTCTC 1 cut(s) 214
BsaJI CCNNGG 2 cut(s) 30, 801
Bsc4I CCNNNNNNNGG 1 cut(s) 137
Bse3DI GCAATG 1 cut(s) 427
Bse8I GATNNNNATC 1 cut(s) 348
BseBI CCWGG 2 cut(s) 32, 803
BseDI CCNNGG 2 cut(s) 30, 801
BseGI GGATG 1 cut(s) 204
BseJI GATNNNNATC 1 cut(s) 348
BseLI CCNNNNNNNGG 1 cut(s) 137
BseMI GCAATG 1 cut(s) 427
BseMII CTCAG 1 cut(s) 562
BshNI GGYRCC 1 cut(s) 58
BslFI GGGAC 3 cut(s) 313, 423, 784
BslI CCNNNNNNNGG 1 cut(s) 137
BsmAI GTCTC 2 cut(s) 214, 494
BsmFI GGGAC 3 cut(s) 313, 423, 784
Bso31I GGTCTC 1 cut(s) 214
Bsp143I GATC 2 cut(s) 349, 684
BspACI CCGC 2 cut(s) 62, 309
BspCNI CTCAG 1 cut(s) 561
BspLI GGNNCC 3 cut(s) 60, 156, 411
BspMI ACCTGC 1 cut(s) 837
BspOI GCTAGC 1 cut(s) 846
BspPI GGATC 1 cut(s) 344
BspT107I GGYRCC 1 cut(s) 58
BspTI CTTAAG 1 cut(s) 218
BspTNI GGTCTC 1 cut(s) 214
BsrDI GCAATG 1 cut(s) 427
BssECI CCNNGG 2 cut(s) 30, 801
BssMI GATC 2 cut(s) 349, 684
Bst2UI CCWGG 2 cut(s) 32, 803
Bst4CI ACNGT 1 cut(s) 528
Bst6I CTCTTC 1 cut(s) 125
BstAFI CTTAAG 1 cut(s) 218
BstC8I GCNNGC 2 cut(s) 489, 844
BstDEI CTNAG 2 cut(s) 506, 548
BstF5I GGATG 1 cut(s) 204
BstHHI GCGC 1 cut(s) 757
BstKTI GATC 2 cut(s) 352, 687
BstMAI GTCTC 2 cut(s) 214, 494
BstMBI GATC 2 cut(s) 349, 684
BstNI CCWGG 2 cut(s) 32, 803
BstSCI CCNGG 2 cut(s) 30, 801
BsuI GTATCC 1 cut(s) 106
BtsCI GGATG 1 cut(s) 204
BveI ACCTGC 1 cut(s) 837
Cac8I GCNNGC 2 cut(s) 489, 844
CfoI GCGC 1 cut(s) 757
Cfr13I GGNCC 2 cut(s) 247, 410
Csp6I GTAC 4 cut(s) 59, 110, 255, 312
CviAII CATG 1 cut(s) 532
CviJI RGCY 7 cut(s) 370, 402, 491, 665, 725, 820, 842
CviKI_1 RGCY 7 cut(s) 370, 402, 491, 665, 725, 820, 842
CviQI GTAC 4 cut(s) 59, 110, 255, 312
DdeI CTNAG 2 cut(s) 506, 548
DpnI GATC 2 cut(s) 351, 686
DpnII GATC 2 cut(s) 349, 684
Eam1104I CTCTTC 1 cut(s) 125
EarI CTCTTC 1 cut(s) 125
Eco31I GGTCTC 1 cut(s) 214
Eco47I GGWCC 2 cut(s) 247, 410
EcoO109I RGGNCCY 1 cut(s) 410
EcoRI GAATTC 2 cut(s) 47, 586
EcoRII CCWGG 2 cut(s) 30, 801
FaeI CATG 1 cut(s) 535
FaiI YATR 7 cut(s) 81, 192, 434, 533, 616, 645, 797
FaqI GGGAC 3 cut(s) 313, 423, 784
FatI CATG 1 cut(s) 531
FokI GGATG 1 cut(s) 211
FspBI CTAG 5 cut(s) 20, 105, 195, 270, 843
FspI TGCGCA 1 cut(s) 756
GlaI GCGC 1 cut(s) 756
GsuI CTGGAG 2 cut(s) 53, 497
HhaI GCGC 1 cut(s) 757
Hin1II CATG 1 cut(s) 535
Hin6I GCGC 1 cut(s) 755
HinP1I GCGC 1 cut(s) 755
HinfI GANTC 3 cut(s) 115, 502, 574
HphI GGTGA 3 cut(s) 178, 287, 713
Hpy188I TCNGA 1 cut(s) 70
Hpy188III TCNNGA 5 cut(s) 44, 105, 321, 458, 566
HpyAV CCTTC 6 cut(s) 83, 135, 423, 632, 727, 768
HpyCH4III ACNGT 1 cut(s) 528
HpyCH4V TGCA 2 cut(s) 531, 812
HpyF3I CTNAG 2 cut(s) 506, 548
Hsp92II CATG 1 cut(s) 535
HspAI GCGC 1 cut(s) 755
KpnI GGTACC 1 cut(s) 62
Kzo9I GATC 2 cut(s) 349, 684
LweI GCATC 1 cut(s) 694
MaeI CTAG 5 cut(s) 20, 105, 195, 270, 843
MaeIII GTNAC 1 cut(s) 372
MalI GATC 2 cut(s) 351, 686
MboI GATC 2 cut(s) 349, 684
MboII GAAGA 5 cut(s) 112, 407, 728, 742, 751
MluCI AATT 7 cut(s) 47, 175, 294, 383, 440, 517, 586
MlyI GAGTC 2 cut(s) 109, 496
MmeI TCCRAC 1 cut(s) 766
MseI TTAA 2 cut(s) 219, 779
MspA1I CMGCKG 2 cut(s) 370, 725
MspCI CTTAAG 1 cut(s) 218
MspR9I CCNGG 2 cut(s) 32, 803
MvaI CCWGG 2 cut(s) 32, 803
NdeII GATC 2 cut(s) 349, 684
NheI GCTAGC 1 cut(s) 842
NlaIII CATG 1 cut(s) 535
NlaIV GGNNCC 3 cut(s) 60, 156, 411
NsbI TGCGCA 1 cut(s) 756
PfeI GAWTC 1 cut(s) 574
PleI GAGTC 2 cut(s) 109, 496
PpsI GAGTC 2 cut(s) 109, 496
PpuMI RGGWCCY 1 cut(s) 410
Psp5II RGGWCCY 1 cut(s) 410
Psp6I CCWGG 2 cut(s) 30, 801
PspGI CCWGG 2 cut(s) 30, 801
PspN4I GGNNCC 3 cut(s) 60, 156, 411
PspPI GGNCC 2 cut(s) 247, 410
PspPPI RGGWCCY 1 cut(s) 410
PvuII CAGCTG 2 cut(s) 370, 725
RsaI GTAC 4 cut(s) 60, 111, 256, 313
RsaNI GTAC 4 cut(s) 59, 110, 255, 312
SaqAI TTAA 2 cut(s) 219, 779
Sau3AI GATC 2 cut(s) 349, 684
Sau96I GGNCC 2 cut(s) 247, 410
ScaI AGTACT 1 cut(s) 256
SchI GAGTC 2 cut(s) 109, 496
ScrFI CCNGG 2 cut(s) 32, 803
SfaNI GCATC 1 cut(s) 694
SinI GGWCC 2 cut(s) 247, 410
SmlI CTYRAG 3 cut(s) 218, 564, 821
SmoI CTYRAG 3 cut(s) 218, 564, 821
Sse9I AATT 7 cut(s) 47, 175, 294, 383, 440, 517, 586
SsiI CCGC 2 cut(s) 62, 309
SspI AATATT 1 cut(s) 830
SspMI CTAG 5 cut(s) 20, 105, 195, 270, 843
StyD4I CCNGG 2 cut(s) 30, 801
TaaI ACNGT 1 cut(s) 528
TasI AATT 7 cut(s) 47, 175, 294, 383, 440, 517, 586
TatI WGTACW 2 cut(s) 109, 254
TfiI GAWTC 1 cut(s) 574
Tru1I TTAA 2 cut(s) 219, 779
Tru9I TTAA 2 cut(s) 219, 779
TspDTI ATGAA 4 cut(s) 40, 112, 215, 708
Vha464I CTTAAG 1 cut(s) 218
VpaK11BI GGWCC 2 cut(s) 247, 410
XapI RAATTY 4 cut(s) 47, 175, 517, 586
XbaI TCTAGA 1 cut(s) 104
XspI CTAG 5 cut(s) 20, 105, 195, 270, 843
ZrmI AGTACT 1 cut(s) 256
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.