Rh7AG076400

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0000441
Physical Location & Seq
Reverse (-)
5456639 .. 5458756
2118 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG076400.1

Sequence Viewer

Length: 858 bp
ATGGTACAGACGTTGCTTTGGTGCTTTATGGCAAAGAAGGAGTATCCCTATCTAGAGTACAGGTGTGATTTATTGAAGTTTGGGTGTGTAATTGCTCTGCCGTATTGGTTTTGTGAGCGAACTCTCTTCATTGAACCGATGAGAGGAAGGGAACAAATGGAACCGAAAATTGTGAAATGGAATTTGCTGGAACATTATGCTAGGATGAAAGCGGTCTCTATTCTTGAGATAGAGGTAAAGGAGAGAGATGAGGATCAGAGTACTAATGTTGTGCCTAGTGGTGAGAAGCATTTAGTTGAAATTGGGACTACAAGCGGTACAAAATCAAGAGAACAAAAAAATGTGACTGATTTTGATCCCAACAAGATGTTCCAGCTGTTACCGACCCAATTCTACTTGGAAGAAAGCCAAGAGGGACCTTCAAGCAATGAGAATGATATACCTGAATTGGAGAAAAGGGTTCAAGAGTTTGCTGATTTGCTGGAGGTTGAGCGAGCCAAAAATGAGACTCTTAGTGCAGAAAATTTGAAACTGTGCATGGAGATAGGATTGCTCAGGCAAGCCATTCCTAAATATGAGATTCCAAATGGGAATTCAAGGAAGTTGAGGACAAAAGAACTATGTAAAAAACCATCATTCCTTGAAGGTTATATCATTGGCGACATTAGAGCCAAAAGAGGTAAGGAAAAGATCATTGATGAAATAGGTGATGTTGTTGTGGAAGAACCAGCTGTGAAGAAGGAGAAGAAACAGATTGTTGTGCAACAAATAGGTGTGAGAAGGTTAAGGGTTGGAAAGTGTATGTCCCAGGTAAATGCAGAAAAGCTCAAGGAATATTTGTCCAAAGCTAGCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

285

Amino Acids

33.12

Weight (kDa)

8.04

Isoelectric Point (pI)

45.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 843
AciI CCGC 2 cut(s) 212, 315
AclWI GGATC 2 cut(s) 261, 350
AcsI RAATTY 3 cut(s) 181, 523, 592
AfaI GTAC 4 cut(s) 6, 59, 262, 319
AfiI CCNNNNNNNGG 1 cut(s) 143
AgsI TTSAA 8 cut(s) 76, 134, 299, 423, 464, 529, 597, 644
AjnI CCWGG 1 cut(s) 807
AjuI GAANNNNNNNTTGG 4 cut(s) 353, 385, 577, 609
AluBI AGCT 4 cut(s) 376, 731, 826, 848
AluI AGCT 4 cut(s) 376, 731, 826, 848
Alw26I GTCTC 2 cut(s) 220, 500
AlwI GGATC 2 cut(s) 261, 350
ApoI RAATTY 3 cut(s) 181, 523, 592
AspS9I GGNCC 1 cut(s) 416
AsuHPI GGTGA 2 cut(s) 293, 719
AsuNHI GCTAGC 1 cut(s) 848
AvaII GGWCC 1 cut(s) 416
BaeI ACNNNNGTAYC 1 cut(s) 29
BccI CCATC 1 cut(s) 640
BceAI ACGGC 1 cut(s) 85
BciT130I CCWGG 1 cut(s) 809
BciVI GTATCC 1 cut(s) 54
BcoDI GTCTC 2 cut(s) 220, 500
BfaI CTAG 4 cut(s) 53, 201, 276, 849
BfuAI ACCTGC 1 cut(s) 843
BfuI GTATCC 1 cut(s) 54
BmcAI AGTACT 1 cut(s) 262
Bme1390I CCNGG 1 cut(s) 809
Bme18I GGWCC 1 cut(s) 416
BmgT120I GGNCC 1 cut(s) 416
BmiI GGNNCC 2 cut(s) 162, 417
BmrFI CCNGG 1 cut(s) 809
BmtI GCTAGC 1 cut(s) 852
BpmI CTGGAG 1 cut(s) 503
Bpu10I CCTNAGC 1 cut(s) 554
BpuEI CTTGAG 2 cut(s) 245, 812
BsaBI GATNNNNATC 2 cut(s) 252, 354
BsaI GGTCTC 1 cut(s) 220
BsaJI CCNNGG 1 cut(s) 807
Bsc4I CCNNNNNNNGG 1 cut(s) 143
Bse3DI GCAATG 1 cut(s) 433
Bse8I GATNNNNATC 2 cut(s) 252, 354
BseBI CCWGG 1 cut(s) 809
BseDI CCNNGG 1 cut(s) 807
BseGI GGATG 1 cut(s) 210
BseJI GATNNNNATC 2 cut(s) 252, 354
BseLI CCNNNNNNNGG 1 cut(s) 143
BseMI GCAATG 1 cut(s) 433
BseMII CTCAG 1 cut(s) 568
BsgI GTGCAG 1 cut(s) 537
BslFI GGGAC 3 cut(s) 319, 429, 790
BslI CCNNNNNNNGG 1 cut(s) 143
BsmAI GTCTC 2 cut(s) 220, 500
BsmFI GGGAC 3 cut(s) 319, 429, 790
Bso31I GGTCTC 1 cut(s) 220
Bsp143I GATC 3 cut(s) 253, 355, 690
BspACI CCGC 2 cut(s) 212, 315
BspCNI CTCAG 1 cut(s) 567
BspLI GGNNCC 2 cut(s) 162, 417
BspMI ACCTGC 1 cut(s) 843
BspOI GCTAGC 1 cut(s) 852
BspPI GGATC 2 cut(s) 261, 350
BspTNI GGTCTC 1 cut(s) 220
BsrDI GCAATG 1 cut(s) 433
BssECI CCNNGG 1 cut(s) 807
BssMI GATC 3 cut(s) 253, 355, 690
Bst2UI CCWGG 1 cut(s) 809
Bst4CI ACNGT 1 cut(s) 534
Bst6I CTCTTC 1 cut(s) 131
BstC8I GCNNGC 3 cut(s) 495, 561, 850
BstDEI CTNAG 2 cut(s) 512, 554
BstF5I GGATG 1 cut(s) 210
BstKTI GATC 3 cut(s) 256, 358, 693
BstMAI GTCTC 2 cut(s) 220, 500
BstMBI GATC 3 cut(s) 253, 355, 690
BstNI CCWGG 1 cut(s) 809
BstSCI CCNGG 1 cut(s) 807
BsuI GTATCC 1 cut(s) 54
BtsCI GGATG 1 cut(s) 210
BveI ACCTGC 1 cut(s) 843
Cac8I GCNNGC 3 cut(s) 495, 561, 850
Cfr13I GGNCC 1 cut(s) 416
Csp6I GTAC 4 cut(s) 5, 58, 261, 318
CviAII CATG 1 cut(s) 538
CviJI RGCY 8 cut(s) 376, 408, 497, 563, 671, 731, 826, 848
CviKI_1 RGCY 8 cut(s) 376, 408, 497, 563, 671, 731, 826, 848
CviQI GTAC 4 cut(s) 5, 58, 261, 318
DdeI CTNAG 2 cut(s) 512, 554
DpnI GATC 3 cut(s) 255, 357, 692
DpnII GATC 3 cut(s) 253, 355, 690
Eam1104I CTCTTC 1 cut(s) 131
EarI CTCTTC 1 cut(s) 131
Eco31I GGTCTC 1 cut(s) 220
Eco47I GGWCC 1 cut(s) 416
EcoO109I RGGNCCY 1 cut(s) 416
EcoRI GAATTC 1 cut(s) 592
EcoRII CCWGG 1 cut(s) 807
FaeI CATG 1 cut(s) 541
FaiI YATR 8 cut(s) 29, 198, 440, 539, 576, 622, 651, 803
FaqI GGGAC 3 cut(s) 319, 429, 790
FatI CATG 1 cut(s) 537
FokI GGATG 1 cut(s) 217
FspBI CTAG 4 cut(s) 53, 201, 276, 849
GsuI CTGGAG 1 cut(s) 503
Hin1II CATG 1 cut(s) 541
HinfI GANTC 2 cut(s) 508, 580
HphI GGTGA 2 cut(s) 293, 719
Hpy188I TCNGA 1 cut(s) 258
Hpy188III TCNNGA 4 cut(s) 53, 224, 327, 464
HpyAV CCTTC 6 cut(s) 31, 141, 429, 638, 733, 774
HpyCH4III ACNGT 1 cut(s) 534
HpyCH4IV ACGT 1 cut(s) 11
HpyCH4V TGCA 4 cut(s) 518, 537, 763, 818
HpyF3I CTNAG 2 cut(s) 512, 554
HpySE526I ACGT 1 cut(s) 11
Hsp92II CATG 1 cut(s) 541
Kzo9I GATC 3 cut(s) 253, 355, 690
MaeI CTAG 4 cut(s) 53, 201, 276, 849
MaeII ACGT 1 cut(s) 11
MaeIII GTNAC 2 cut(s) 343, 378
MalI GATC 3 cut(s) 255, 357, 692
MboI GATC 3 cut(s) 253, 355, 690
MboII GAAGA 5 cut(s) 118, 413, 734, 748, 757
MluCI AATT 8 cut(s) 90, 168, 181, 300, 389, 446, 523, 592
MlyI GAGTC 1 cut(s) 502
MmeI TCCRAC 1 cut(s) 772
MnlI CCTC 7 cut(s) 137, 226, 244, 406, 478, 600, 671
MseI TTAA 1 cut(s) 785
MspA1I CMGCKG 2 cut(s) 376, 731
MspR9I CCNGG 1 cut(s) 809
MvaI CCWGG 1 cut(s) 809
NdeII GATC 3 cut(s) 253, 355, 690
NheI GCTAGC 1 cut(s) 848
NlaIII CATG 1 cut(s) 541
NlaIV GGNNCC 2 cut(s) 162, 417
NmuCI GTSAC 1 cut(s) 343
PfeI GAWTC 1 cut(s) 580
PleI GAGTC 1 cut(s) 502
PpsI GAGTC 1 cut(s) 502
PpuMI RGGWCCY 1 cut(s) 416
Psp5II RGGWCCY 1 cut(s) 416
Psp6I CCWGG 1 cut(s) 807
PspGI CCWGG 1 cut(s) 807
PspN4I GGNNCC 2 cut(s) 162, 417
PspPI GGNCC 1 cut(s) 416
PspPPI RGGWCCY 1 cut(s) 416
PvuII CAGCTG 2 cut(s) 376, 731
RsaI GTAC 4 cut(s) 6, 59, 262, 319
RsaNI GTAC 4 cut(s) 5, 58, 261, 318
SaqAI TTAA 1 cut(s) 785
Sau3AI GATC 3 cut(s) 253, 355, 690
Sau96I GGNCC 1 cut(s) 416
ScaI AGTACT 1 cut(s) 262
SchI GAGTC 1 cut(s) 502
ScrFI CCNGG 1 cut(s) 809
SinI GGWCC 1 cut(s) 416
SmlI CTYRAG 2 cut(s) 224, 827
SmoI CTYRAG 2 cut(s) 224, 827
Sse9I AATT 8 cut(s) 90, 168, 181, 300, 389, 446, 523, 592
SsiI CCGC 2 cut(s) 212, 315
SspI AATATT 1 cut(s) 836
SspMI CTAG 4 cut(s) 53, 201, 276, 849
StyD4I CCNGG 1 cut(s) 807
TaaI ACNGT 1 cut(s) 534
TaiI ACGT 1 cut(s) 14
TasI AATT 8 cut(s) 90, 168, 181, 300, 389, 446, 523, 592
TatI WGTACW 2 cut(s) 57, 260
TfiI GAWTC 1 cut(s) 580
Tru1I TTAA 1 cut(s) 785
Tru9I TTAA 1 cut(s) 785
TseFI GTSAC 1 cut(s) 343
Tsp45I GTSAC 1 cut(s) 343
TspDTI ATGAA 3 cut(s) 118, 221, 714
VpaK11BI GGWCC 1 cut(s) 416
XapI RAATTY 3 cut(s) 181, 523, 592
XbaI TCTAGA 1 cut(s) 52
XspI CTAG 4 cut(s) 53, 201, 276, 849
ZrmI AGTACT 1 cut(s) 262
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.