RLG00000036108

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0000441
Physical Location & Seq
Forward (+)
75807507 .. 75811450
3944 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000036108

Sequence Viewer

Length: 1098 bp
ATGGTAGAAAGGGAGAATCTCTGCTTCCCGGTTCGAATTGACTATGAGAATCTTCCTCTGCAGTGTGCCCACTGTGGTCTGATAGGTCATGCACAGAAGAATCGCAGGCAATTGGACGTGAAACGGTTTTCAGCTAATAAAGCCCCTGAGAAGCACAAGGTGGTTCGTCAAGAGTATCGGGTTAAGCCCACGGCTATAATTCCTCCAGTTTCTTCACCTTCTCAGGATAATGAAGGCAATCCCTCTTCAGCGTCCAAGAGTGATGGAAGTAATGCATCTCCAGCCTCATCTCCTGTGATACATGCGGATAAGACTCAAGAGATGCATGTCGTGGAGCACTCTGCCCCAACTTATAATGATGCTCATATTGCAGTAGTGACTTTTGTTGATAATATTTTGGAGGAAGCCGCTGGAAATATCATGGAAATAATGGCGCAAAGAGTTATGGAGGAGGATGAACCTGTCTTAGAATCTAATGAGCATGAGGTTTCAGAGGCTTCAGATAATGATTCTCCTGTTAGTGATACACCATCCCGTACTTGGGGTGAAATTTTTGATGAAGAACAGGATGGTGGTCCAGGTGTTGCAAGTGCTTCACCAAGTCTTGGCCCACCTGGCTTTGGTCCGTCATCCTGTAAGGCTGCCTTTGAAATGGATGCAGTTGCAAGGTATGATAGACTATACAAGTTCTTGATTGCAGGTTTTGGTTTCATCTTCTTGTTTCTCAATAGATACTACAAGTTAATTTTGATGGCTAAAGAGTACACCCACCTGGAATTTAGGTGCGACCTTCTCAAGTTTGGACGTGTTATGACCGATGAGTTAAGGGCTGAAATTACTGAAGTGAAGCTTGATCTGATAGAGTCCACACCGTTTAGGGATTTGTTTAGAGCTTTTTATGAGCGGCAAATAATAGACTCTGCTTGTAGGAAGTCTGATAGTGACATCGTATCTCTTTTAAAATGCTTTGACAAGGAAAAAAACTCGTTTCAGTTTGGGGAAATTACTGGTACAATATTTGTAGGTGACATTGCCGAACTATTGGAATGGGAAATCAAATTTCATTCAAAAAAAGGGAAAAAAAGAAAAGCAAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

366

Amino Acids

41.05

Weight (kDa)

5.35

Isoelectric Point (pI)

53.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 354
Acc36I ACCTGC 1 cut(s) 689
AccB7I CCANNNNNTGG 1 cut(s) 605
AccBSI CCGCTC 1 cut(s) 904
AciI CCGC 3 cut(s) 305, 408, 904
AcsI RAATTY 3 cut(s) 549, 776, 1058
AcuI CTGAAG 3 cut(s) 231, 483, 861
AdeI CACNNNGTG 1 cut(s) 160
AfaI GTAC 3 cut(s) 538, 764, 1012
AfiI CCNNNNNNNGG 4 cut(s) 540, 541, 605, 620
AflIII ACRYGT 1 cut(s) 805
AgsI TTSAA 2 cut(s) 650, 1068
AjiI CACGTC 2 cut(s) 118, 806
AjnI CCWGG 3 cut(s) 577, 613, 771
AluBI AGCT 3 cut(s) 134, 850, 893
AluI AGCT 3 cut(s) 134, 850, 893
Alw21I GWGCWC 1 cut(s) 339
AoxI GGCC 1 cut(s) 607
ApeKI GCWGC 1 cut(s) 641
ApoI RAATTY 3 cut(s) 549, 776, 1058
AspLEI GCGC 1 cut(s) 436
AspS9I GGNCC 3 cut(s) 575, 608, 623
AsuC2I CCSGG 1 cut(s) 29
AsuHPI GGTGA 4 cut(s) 207, 557, 588, 1037
AsuII TTCGAA 1 cut(s) 34
AvaII GGWCC 2 cut(s) 575, 623
BaeGI GKGCMC 1 cut(s) 70
Bbv12I GWGCWC 1 cut(s) 339
BbvI GCAGC 1 cut(s) 628
BccI CCATC 4 cut(s) 257, 538, 563, 745
BceAI ACGGC 1 cut(s) 207
BciT130I CCWGG 3 cut(s) 579, 615, 773
BcnI CCSGG 1 cut(s) 29
BfmI CTRYAG 1 cut(s) 59
BfuAI ACCTGC 1 cut(s) 689
BglI GCCNNNNNGGC 1 cut(s) 615
BisI GCNGC 3 cut(s) 408, 642, 905
BlsI GCNGC 3 cut(s) 409, 643, 906
Bme1390I CCNGG 4 cut(s) 29, 579, 615, 773
Bme18I GGWCC 2 cut(s) 575, 623
BmgBI CACGTC 2 cut(s) 118, 806
BmgT120I GGNCC 3 cut(s) 575, 608, 623
BmrFI CCNGG 4 cut(s) 29, 579, 615, 773
BmsI GCATC 4 cut(s) 284, 312, 349, 646
BpmI CTGGAG 2 cut(s) 189, 264
Bpu14I TTCGAA 1 cut(s) 34
BpuEI CTTGAG 2 cut(s) 300, 779
BpuMI CCSGG 1 cut(s) 29
BsaJI CCNNGG 1 cut(s) 189
Bsc4I CCNNNNNNNGG 4 cut(s) 540, 541, 605, 620
Bse1I ACTGG 2 cut(s) 206, 1012
Bse3DI GCAATG 1 cut(s) 1029
BseBI CCWGG 3 cut(s) 579, 615, 773
BseDI CCNNGG 1 cut(s) 189
BseGI GGATG 5 cut(s) 460, 530, 574, 629, 661
BseLI CCNNNNNNNGG 4 cut(s) 540, 541, 605, 620
BseMI GCAATG 1 cut(s) 1029
BseMII CTCAG 2 cut(s) 138, 236
BseNI ACTGG 2 cut(s) 206, 1012
BseRI GAGGAG 1 cut(s) 464
BseSI GKGCMC 1 cut(s) 70
BseXI GCAGC 1 cut(s) 628
BshFI GGCC 1 cut(s) 609
BsiHKAI GWGCWC 1 cut(s) 339
BsiSI CCGG 1 cut(s) 29
BslI CCNNNNNNNGG 4 cut(s) 540, 541, 605, 620
BsnI GGCC 1 cut(s) 609
Bsp119I TTCGAA 1 cut(s) 34
Bsp1286I GDGCHC 2 cut(s) 70, 339
Bsp143I GATC 1 cut(s) 853
BspACI CCGC 3 cut(s) 305, 408, 904
BspANI GGCC 1 cut(s) 609
BspCNI CTCAG 2 cut(s) 139, 235
BspMAI CTGCAG 1 cut(s) 63
BspMI ACCTGC 1 cut(s) 689
BspT104I TTCGAA 1 cut(s) 34
BsrBI CCGCTC 1 cut(s) 904
BsrDI GCAATG 1 cut(s) 1029
BsrI ACTGG 2 cut(s) 206, 1012
BssECI CCNNGG 1 cut(s) 189
BssMI GATC 1 cut(s) 853
Bst2UI CCWGG 3 cut(s) 579, 615, 773
Bst4CI ACNGT 3 cut(s) 74, 126, 873
Bst6I CTCTTC 1 cut(s) 250
BstBI TTCGAA 1 cut(s) 34
BstC8I GCNNGC 1 cut(s) 107
BstDEI CTNAG 3 cut(s) 147, 222, 466
BstDSI CCRYGG 1 cut(s) 189
BstF5I GGATG 5 cut(s) 460, 530, 574, 629, 661
BstHHI GCGC 1 cut(s) 436
BstKTI GATC 1 cut(s) 856
BstMBI GATC 1 cut(s) 853
BstMWI GCNNNNNNNGC 4 cut(s) 140, 281, 368, 615
BstNI CCWGG 3 cut(s) 579, 615, 773
BstNSI RCATGY 2 cut(s) 305, 329
BstSCI CCNGG 4 cut(s) 27, 577, 613, 771
BstSFI CTRYAG 1 cut(s) 59
BstSLI GKGCMC 1 cut(s) 70
BstV1I GCAGC 1 cut(s) 628
BsuRI GGCC 1 cut(s) 609
BtgI CCRYGG 1 cut(s) 189
BtrI CACGTC 2 cut(s) 118, 806
BtsCI GGATG 5 cut(s) 460, 530, 574, 629, 661
BtsI GCAGTG 1 cut(s) 68
BtsIMutI CAGTG 2 cut(s) 68, 70
BveI ACCTGC 1 cut(s) 689
Cac8I GCNNGC 1 cut(s) 107
CfoI GCGC 1 cut(s) 436
Cfr13I GGNCC 3 cut(s) 575, 608, 623
CseI GACGC 1 cut(s) 240
Csp6I GTAC 3 cut(s) 537, 763, 1011
CviAII CATG 5 cut(s) 89, 302, 326, 421, 482
CviQI GTAC 3 cut(s) 537, 763, 1011
DdeI CTNAG 3 cut(s) 147, 222, 466
DpnI GATC 1 cut(s) 855
DpnII GATC 1 cut(s) 853
DraI TTTAAA 1 cut(s) 960
DraIII CACNNNGTG 1 cut(s) 160
Eam1104I CTCTTC 1 cut(s) 250
EarI CTCTTC 1 cut(s) 250
Eco47I GGWCC 2 cut(s) 575, 623
Eco57I CTGAAG 3 cut(s) 231, 483, 861
EcoRII CCWGG 3 cut(s) 577, 613, 771
EcoT22I ATGCAT 2 cut(s) 277, 327
FaeI CATG 5 cut(s) 92, 305, 329, 424, 485
FalI AAGNNNNNCTT 4 cut(s) 629, 661, 834, 866
FatI CATG 5 cut(s) 88, 301, 325, 420, 481
Fnu4HI GCNGC 3 cut(s) 408, 642, 905
FokI GGATG 5 cut(s) 467, 517, 581, 616, 668
Fsp4HI GCNGC 3 cut(s) 408, 642, 905
GlaI GCGC 1 cut(s) 435
GluI GCNGC 3 cut(s) 408, 642, 905
GsuI CTGGAG 2 cut(s) 189, 264
HaeIII GGCC 1 cut(s) 609
HapII CCGG 1 cut(s) 29
HgaI GACGC 1 cut(s) 240
HhaI GCGC 1 cut(s) 436
Hin1II CATG 5 cut(s) 92, 305, 329, 424, 485
Hin6I GCGC 1 cut(s) 434
HinP1I GCGC 1 cut(s) 434
HindIII AAGCTT 1 cut(s) 848
HinfI GANTC 8 cut(s) 16, 49, 100, 313, 470, 509, 863, 917
HpaII CCGG 1 cut(s) 29
HphI GGTGA 4 cut(s) 207, 557, 588, 1037
Hpy166II GTNNAC 2 cut(s) 765, 867
Hpy188I TCNGA 5 cut(s) 81, 493, 502, 858, 937
Hpy188III TCNNGA 4 cut(s) 170, 224, 317, 691
Hpy8I GTNNAC 2 cut(s) 765, 867
HpyAV CCTTC 3 cut(s) 227, 228, 800
HpyCH4III ACNGT 3 cut(s) 74, 126, 873
HpyCH4IV ACGT 2 cut(s) 117, 805
HpyCH4V TGCA 9 cut(s) 61, 92, 275, 325, 371, 587, 659, 665, 698
HpyF10VI GCNNNNNNNGC 4 cut(s) 140, 281, 368, 615
HpyF3I CTNAG 3 cut(s) 147, 222, 466
HpySE526I ACGT 2 cut(s) 117, 805
Hsp92II CATG 5 cut(s) 92, 305, 329, 424, 485
HspAI GCGC 1 cut(s) 434
Kzo9I GATC 1 cut(s) 853
LmnI GCTCC 1 cut(s) 334
Lsp1109I GCAGC 1 cut(s) 628
LweI GCATC 4 cut(s) 284, 312, 349, 646
MaeII ACGT 2 cut(s) 117, 805
MaeIII GTNAC 3 cut(s) 376, 941, 1025
MalI GATC 1 cut(s) 855
MbiI CCGCTC 1 cut(s) 904
MboI GATC 1 cut(s) 853
MboII GAAGA 6 cut(s) 44, 109, 204, 237, 572, 706
MfeI CAATTG 1 cut(s) 110
MhlI GDGCHC 2 cut(s) 70, 339
MluCI AATT 9 cut(s) 36, 110, 198, 549, 744, 776, 834, 1002, 1058
MlyI GAGTC 3 cut(s) 307, 872, 911
MnlI CCTC 9 cut(s) 66, 213, 253, 295, 394, 442, 445, 478, 487
Mph1103I ATGCAT 2 cut(s) 277, 327
MseI TTAA 4 cut(s) 183, 743, 824, 959
MspA1I CMGCKG 1 cut(s) 410
MspI CCGG 1 cut(s) 29
MspR9I CCNGG 4 cut(s) 29, 579, 615, 773
MunI CAATTG 1 cut(s) 110
MvaI CCWGG 3 cut(s) 579, 615, 773
MwoI GCNNNNNNNGC 4 cut(s) 140, 281, 368, 615
NciI CCSGG 1 cut(s) 29
NdeII GATC 1 cut(s) 853
NlaIII CATG 5 cut(s) 92, 305, 329, 424, 485
NmuCI GTSAC 3 cut(s) 376, 941, 1025
NsiI ATGCAT 2 cut(s) 277, 327
NspI RCATGY 2 cut(s) 305, 329
NspV TTCGAA 1 cut(s) 34
PfeI GAWTC 5 cut(s) 16, 49, 100, 470, 509
PflMI CCANNNNNTGG 1 cut(s) 605
PkrI GCNGC 3 cut(s) 409, 643, 906
PleI GAGTC 3 cut(s) 307, 871, 911
PpsI GAGTC 3 cut(s) 307, 871, 911
PsiI TTATAA 1 cut(s) 354
Psp6I CCWGG 3 cut(s) 577, 613, 771
PspGI CCWGG 3 cut(s) 577, 613, 771
PspPI GGNCC 3 cut(s) 575, 608, 623
PstI CTGCAG 1 cut(s) 63
RsaI GTAC 3 cut(s) 538, 764, 1012
RsaNI GTAC 3 cut(s) 537, 763, 1011
SaqAI TTAA 4 cut(s) 183, 743, 824, 959
SatI GCNGC 3 cut(s) 408, 642, 905
Sau3AI GATC 1 cut(s) 853
Sau96I GGNCC 3 cut(s) 575, 608, 623
SchI GAGTC 3 cut(s) 307, 872, 911
ScrFI CCNGG 4 cut(s) 29, 579, 615, 773
SduI GDGCHC 2 cut(s) 70, 339
SfaNI GCATC 4 cut(s) 284, 312, 349, 646
SfcI CTRYAG 1 cut(s) 59
SfuI TTCGAA 1 cut(s) 34
SinI GGWCC 2 cut(s) 575, 623
SmlI CTYRAG 2 cut(s) 315, 794
SmoI CTYRAG 2 cut(s) 315, 794
Sse9I AATT 9 cut(s) 36, 110, 198, 549, 744, 776, 834, 1002, 1058
SsiI CCGC 3 cut(s) 305, 408, 904
SspI AATATT 2 cut(s) 394, 1017
StyD4I CCNGG 4 cut(s) 27, 577, 613, 771
TaaI ACNGT 3 cut(s) 74, 126, 873
TaiI ACGT 2 cut(s) 120, 808
TaqI TCGA 1 cut(s) 34
TaqII GACCGA 1 cut(s) 830
TasI AATT 9 cut(s) 36, 110, 198, 549, 744, 776, 834, 1002, 1058
TatI WGTACW 1 cut(s) 762
TauI GCSGC 2 cut(s) 410, 907
TfiI GAWTC 5 cut(s) 16, 49, 100, 470, 509
Tru1I TTAA 4 cut(s) 183, 743, 824, 959
Tru9I TTAA 4 cut(s) 183, 743, 824, 959
TscAI CASTG 2 cut(s) 68, 77
TseFI GTSAC 3 cut(s) 376, 941, 1025
TseI GCWGC 1 cut(s) 641
Tsp45I GTSAC 3 cut(s) 376, 941, 1025
TspDTI ATGAA 5 cut(s) 246, 471, 573, 700, 1052
TspGWI ACGGA 1 cut(s) 615
TspRI CASTG 2 cut(s) 68, 77
Van91I CCANNNNNTGG 1 cut(s) 605
VpaK11BI GGWCC 2 cut(s) 575, 623
XapI RAATTY 3 cut(s) 549, 776, 1058
XceI RCATGY 2 cut(s) 305, 329
XcmI CCANNNNNNNNNTGG 1 cut(s) 537
Zsp2I ATGCAT 2 cut(s) 277, 327
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.