Rh5DG061700

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0000441
Physical Location & Seq
Reverse (-)
5259210 .. 5259644
435 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG061700.1

Sequence Viewer

Length: 435 bp
ATGACTGACGAGTTAAGGGCAGATATTACTAAAGTGAAGCTTGATATGATAGAGTCCACACCGTTCAGGAATTTGTTTAGAGCTTTTTATGAGCGGAAAATAATAGACTCTGCTTGTAGGAAGTCTGATATTGACATCGTTTCTCTTTTAAAATGCTTTGACAAGGAAAAAAACTCTTTTCAGTTTGGGAAAATTACTGGTACCATATCTGTAGGTGACATTGCAGAACTGTTTGGTTTGAATATTGAAGGCCATGAGATCAACCTTAACCAGAAGAAGAGAAAAAGGGATTCTGATTTCATTAAAAGACGATTTCCTGGAGTGAAAAGGTTGTCCAAGGTGATCCTGGAGCAACAAATCAAAGATGTAGCTAAACTGAGGCGCTTGAGAATGAAGGTGATTTTGTTAGGTTGGTTTGTCTCTATTTTTGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

144

Amino Acids

16.84

Weight (kDa)

9.91

Isoelectric Point (pI)

48.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 200
AccB1I GGYRCC 1 cut(s) 200
AccBSI CCGCTC 1 cut(s) 94
AciI CCGC 1 cut(s) 94
AclWI GGATC 1 cut(s) 337
AcsI RAATTY 1 cut(s) 70
AfaI GTAC 1 cut(s) 202
AgsI TTSAA 2 cut(s) 241, 248
AjnI CCWGG 2 cut(s) 316, 345
AluBI AGCT 3 cut(s) 40, 83, 371
AluI AGCT 3 cut(s) 40, 83, 371
Alw26I GTCTC 1 cut(s) 424
AlwI GGATC 1 cut(s) 337
AoxI GGCC 1 cut(s) 250
ApoI RAATTY 1 cut(s) 70
Asp718I GGTACC 1 cut(s) 200
AspLEI GCGC 1 cut(s) 384
AsuHPI GGTGA 3 cut(s) 227, 352, 409
BanI GGYRCC 1 cut(s) 200
BciT130I CCWGG 2 cut(s) 318, 347
BcoDI GTCTC 1 cut(s) 424
BfmI CTRYAG 1 cut(s) 210
BfoI RGCGCY 1 cut(s) 385
Bme1390I CCNGG 2 cut(s) 318, 347
BmiI GGNNCC 1 cut(s) 202
BmrFI CCNGG 2 cut(s) 318, 347
BpmI CTGGAG 2 cut(s) 339, 368
BpuEI CTTGAG 1 cut(s) 406
BsaJI CCNNGG 1 cut(s) 336
Bse1I ACTGG 1 cut(s) 202
Bse3DI GCAATG 1 cut(s) 219
BseBI CCWGG 2 cut(s) 318, 347
BseDI CCNNGG 1 cut(s) 336
BseMI GCAATG 1 cut(s) 219
BseMII CTCAG 1 cut(s) 368
BseNI ACTGG 1 cut(s) 202
BshFI GGCC 1 cut(s) 252
BshNI GGYRCC 1 cut(s) 200
BsmAI GTCTC 1 cut(s) 424
BsnI GGCC 1 cut(s) 252
Bsp143I GATC 2 cut(s) 258, 342
BspACI CCGC 1 cut(s) 94
BspANI GGCC 1 cut(s) 252
BspCNI CTCAG 1 cut(s) 369
BspLI GGNNCC 1 cut(s) 202
BspPI GGATC 1 cut(s) 337
BspT107I GGYRCC 1 cut(s) 200
BsrBI CCGCTC 1 cut(s) 94
BsrDI GCAATG 1 cut(s) 219
BsrI ACTGG 1 cut(s) 202
BssECI CCNNGG 1 cut(s) 336
BssMI GATC 2 cut(s) 258, 342
BssT1I CCWWGG 1 cut(s) 336
Bst2UI CCWGG 2 cut(s) 318, 347
Bst4CI ACNGT 2 cut(s) 63, 231
Bst6I CTCTTC 1 cut(s) 272
BstDEI CTNAG 1 cut(s) 377
BstH2I RGCGCY 1 cut(s) 385
BstHHI GCGC 1 cut(s) 384
BstKTI GATC 2 cut(s) 261, 345
BstMAI GTCTC 1 cut(s) 424
BstMBI GATC 2 cut(s) 258, 342
BstNI CCWGG 2 cut(s) 318, 347
BstSCI CCNGG 2 cut(s) 316, 345
BstSFI CTRYAG 1 cut(s) 210
BsuRI GGCC 1 cut(s) 252
CfoI GCGC 1 cut(s) 384
Csp6I GTAC 1 cut(s) 201
CviAII CATG 1 cut(s) 254
CviJI RGCY 4 cut(s) 40, 83, 252, 371
CviKI_1 RGCY 4 cut(s) 40, 83, 252, 371
CviQI GTAC 1 cut(s) 201
DdeI CTNAG 1 cut(s) 377
DpnI GATC 2 cut(s) 260, 344
DpnII GATC 2 cut(s) 258, 342
DraI TTTAAA 1 cut(s) 150
Eam1104I CTCTTC 1 cut(s) 272
EarI CTCTTC 1 cut(s) 272
Eco130I CCWWGG 1 cut(s) 336
EcoRII CCWGG 2 cut(s) 316, 345
EcoT14I CCWWGG 1 cut(s) 336
ErhI CCWWGG 1 cut(s) 336
FaeI CATG 1 cut(s) 257
FaiI YATR 4 cut(s) 47, 90, 206, 255
FalI AAGNNNNNCTT 2 cut(s) 24, 56
FatI CATG 1 cut(s) 253
GlaI GCGC 1 cut(s) 383
GsuI CTGGAG 2 cut(s) 339, 368
HaeII RGCGCY 1 cut(s) 385
HaeIII GGCC 1 cut(s) 252
HhaI GCGC 1 cut(s) 384
Hin1II CATG 1 cut(s) 257
Hin6I GCGC 1 cut(s) 382
HinP1I GCGC 1 cut(s) 382
HindIII AAGCTT 1 cut(s) 38
HinfI GANTC 3 cut(s) 53, 107, 290
HphI GGTGA 3 cut(s) 227, 352, 409
Hpy166II GTNNAC 1 cut(s) 57
Hpy188I TCNGA 2 cut(s) 127, 295
Hpy188III TCNNGA 1 cut(s) 67
Hpy8I GTNNAC 1 cut(s) 57
HpyAV CCTTC 2 cut(s) 242, 388
HpyCH4III ACNGT 2 cut(s) 63, 231
HpyCH4V TGCA 1 cut(s) 224
HpyF3I CTNAG 1 cut(s) 377
Hsp92II CATG 1 cut(s) 257
HspAI GCGC 1 cut(s) 382
KpnI GGTACC 1 cut(s) 204
Kzo9I GATC 2 cut(s) 258, 342
LmnI GCTCC 1 cut(s) 349
LpnPI CCDG 7 cut(s) 52, 183, 284, 303, 330, 332, 359
MaeIII GTNAC 1 cut(s) 215
MalI GATC 2 cut(s) 260, 344
MbiI CCGCTC 1 cut(s) 94
MboI GATC 2 cut(s) 258, 342
MboII GAAGA 2 cut(s) 286, 289
MluCI AATT 2 cut(s) 70, 192
MlyI GAGTC 2 cut(s) 62, 101
MnlI CCTC 1 cut(s) 372
MseI TTAA 4 cut(s) 14, 149, 267, 303
MspR9I CCNGG 2 cut(s) 318, 347
MvaI CCWGG 2 cut(s) 318, 347
NdeII GATC 2 cut(s) 258, 342
NlaIII CATG 1 cut(s) 257
NlaIV GGNNCC 1 cut(s) 202
NmuCI GTSAC 1 cut(s) 215
PfeI GAWTC 1 cut(s) 290
PfoI TCCNGGA 2 cut(s) 316, 345
PleI GAGTC 2 cut(s) 61, 101
PpsI GAGTC 2 cut(s) 61, 101
Psp6I CCWGG 2 cut(s) 316, 345
PspGI CCWGG 2 cut(s) 316, 345
PspN4I GGNNCC 1 cut(s) 202
RsaI GTAC 1 cut(s) 202
RsaNI GTAC 1 cut(s) 201
SaqAI TTAA 4 cut(s) 14, 149, 267, 303
Sau3AI GATC 2 cut(s) 258, 342
SchI GAGTC 2 cut(s) 62, 101
ScrFI CCNGG 2 cut(s) 318, 347
SetI ASST 9 cut(s) 42, 85, 217, 267, 332, 342, 373, 399, 412
SfcI CTRYAG 1 cut(s) 210
SmlI CTYRAG 1 cut(s) 385
SmoI CTYRAG 1 cut(s) 385
Sse9I AATT 2 cut(s) 70, 192
SsiI CCGC 1 cut(s) 94
SspI AATATT 1 cut(s) 244
StyD4I CCNGG 2 cut(s) 316, 345
StyI CCWWGG 1 cut(s) 336
TaaI ACNGT 2 cut(s) 63, 231
TasI AATT 2 cut(s) 70, 192
TfiI GAWTC 1 cut(s) 290
Tru1I TTAA 4 cut(s) 14, 149, 267, 303
Tru9I TTAA 4 cut(s) 14, 149, 267, 303
TseFI GTSAC 1 cut(s) 215
Tsp45I GTSAC 1 cut(s) 215
TspDTI ATGAA 2 cut(s) 289, 407
XapI RAATTY 1 cut(s) 70
XcmI CCANNNNNNNNNTGG 1 cut(s) 343
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.