RLG00000023450

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr5
OG0000441
Physical Location & Seq
Reverse (-)
23958866 .. 23959795
930 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000023450

Sequence Viewer

Length: 636 bp
ATGGCTAAAGAGTACACCCACTTGGAATTTAGGTGCGACCTTCTCAAGTTTGGACGTGTTATGACCGACGAGTTAAGGGCTGAAATTACTGAAGTGAAGCTTGATCTGATAGAGTCCACACCGTTCAGGGATTTGTTTAGAGCTTTTTATGAGCGGCAAATAATAGACTCTGCTTGTAGGAAGTTTGATAGTGACATCGTATCTCTTTTAAAATGCTTTGACAAGGAAAAAAACTCGTTTCAGTTTGGGGAAATTACTGGTACAATATCTGTAGGTGACATTGCTGAACTGTTTGGTTTGACTATTGAAGGCCGTGAGATCAACCTTAACCAGAAGAAGAGAAAAGGGGATTCTGATTTCATTAAAAGACGATTCCCTGGAGTGAAAAGGTTGTCCAAGGTGATCCTGGAGCAACAAATCAAAGATTTATCTAAACTGAGGGGGCTTGAGAATGAATGTGATTTTGTTAGGATCACCTTGGACAACCTTTTCACTCCAGGGAATCATCTTTTAATGAAATCAGAATCCCCTTTTCTCTTCTTCTGGTTAAGGTTGATCTCACGGCCTTCAATATTCAAACCAAACAGTTCAGCAATGTCACCTACAGATATTGTACCAGTAATTTCCCCAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

212

Amino Acids

24.42

Weight (kDa)

8.31

Isoelectric Point (pI)

52.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 154
AciI CCGC 1 cut(s) 154
AclWI GGATC 2 cut(s) 397, 479
AcsI RAATTY 1 cut(s) 26
AcuI CTGAAG 1 cut(s) 111
AfaI GTAC 3 cut(s) 14, 262, 615
AflIII ACRYGT 1 cut(s) 55
AgsI TTSAA 3 cut(s) 308, 570, 577
AjiI CACGTC 1 cut(s) 56
AjnI CCWGG 3 cut(s) 376, 405, 496
AluBI AGCT 2 cut(s) 100, 143
AluI AGCT 2 cut(s) 100, 143
AlwI GGATC 2 cut(s) 397, 479
AoxI GGCC 2 cut(s) 310, 563
ApoI RAATTY 1 cut(s) 26
AsuHPI GGTGA 4 cut(s) 287, 412, 466, 591
BceAI ACGGC 2 cut(s) 297, 578
BciT130I CCWGG 3 cut(s) 378, 407, 498
BfmI CTRYAG 2 cut(s) 270, 603
BisI GCNGC 1 cut(s) 155
BlsI GCNGC 1 cut(s) 156
Bme1390I CCNGG 3 cut(s) 378, 407, 498
BmgBI CACGTC 1 cut(s) 56
BmrFI CCNGG 3 cut(s) 378, 407, 498
BpmI CTGGAG 3 cut(s) 399, 428, 480
BpuEI CTTGAG 2 cut(s) 29, 467
BsaJI CCNNGG 4 cut(s) 376, 396, 477, 497
Bse1I ACTGG 2 cut(s) 262, 617
Bse3DI GCAATG 2 cut(s) 279, 600
BseBI CCWGG 3 cut(s) 378, 407, 498
BseDI CCNNGG 4 cut(s) 376, 396, 477, 497
BseMI GCAATG 2 cut(s) 279, 600
BseMII CTCAG 1 cut(s) 428
BseNI ACTGG 2 cut(s) 262, 617
BshFI GGCC 2 cut(s) 312, 565
BsnI GGCC 2 cut(s) 312, 565
Bsp143I GATC 5 cut(s) 103, 318, 402, 471, 555
BspACI CCGC 1 cut(s) 154
BspANI GGCC 2 cut(s) 312, 565
BspCNI CTCAG 1 cut(s) 429
BspPI GGATC 2 cut(s) 397, 479
BsrBI CCGCTC 1 cut(s) 154
BsrDI GCAATG 2 cut(s) 279, 600
BsrI ACTGG 2 cut(s) 262, 617
BssECI CCNNGG 4 cut(s) 376, 396, 477, 497
BssMI GATC 5 cut(s) 103, 318, 402, 471, 555
BssT1I CCWWGG 2 cut(s) 396, 477
Bst2UI CCWGG 3 cut(s) 378, 407, 498
Bst4CI ACNGT 3 cut(s) 123, 291, 587
Bst6I CTCTTC 2 cut(s) 332, 542
BstDEI CTNAG 1 cut(s) 437
BstKTI GATC 5 cut(s) 106, 321, 405, 474, 558
BstMBI GATC 5 cut(s) 103, 318, 402, 471, 555
BstNI CCWGG 3 cut(s) 378, 407, 498
BstSCI CCNGG 3 cut(s) 376, 405, 496
BstSFI CTRYAG 2 cut(s) 270, 603
BsuRI GGCC 2 cut(s) 312, 565
BtrI CACGTC 1 cut(s) 56
Csp6I GTAC 3 cut(s) 13, 261, 614
CviJI RGCY 7 cut(s) 5, 80, 100, 143, 312, 445, 565
CviKI_1 RGCY 7 cut(s) 5, 80, 100, 143, 312, 445, 565
CviQI GTAC 3 cut(s) 13, 261, 614
DdeI CTNAG 1 cut(s) 437
DpnI GATC 5 cut(s) 105, 320, 404, 473, 557
DpnII GATC 5 cut(s) 103, 318, 402, 471, 555
DraI TTTAAA 1 cut(s) 210
Eam1104I CTCTTC 2 cut(s) 332, 542
EarI CTCTTC 2 cut(s) 332, 542
Eco130I CCWWGG 2 cut(s) 396, 477
Eco57I CTGAAG 1 cut(s) 111
EcoRII CCWGG 3 cut(s) 376, 405, 496
EcoT14I CCWWGG 2 cut(s) 396, 477
ErhI CCWWGG 2 cut(s) 396, 477
FaiI YATR 2 cut(s) 62, 150
FalI AAGNNNNNCTT 2 cut(s) 84, 116
Fnu4HI GCNGC 1 cut(s) 155
Fsp4HI GCNGC 1 cut(s) 155
GluI GCNGC 1 cut(s) 155
GsuI CTGGAG 3 cut(s) 399, 428, 480
HaeIII GGCC 2 cut(s) 312, 565
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 6 cut(s) 113, 167, 350, 372, 502, 524
HphI GGTGA 4 cut(s) 287, 412, 466, 591
Hpy166II GTNNAC 2 cut(s) 15, 117
Hpy188I TCNGA 3 cut(s) 108, 355, 523
Hpy8I GTNNAC 2 cut(s) 15, 117
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 3 cut(s) 50, 302, 576
HpyCH4III ACNGT 3 cut(s) 123, 291, 587
HpyCH4IV ACGT 1 cut(s) 55
HpyF3I CTNAG 1 cut(s) 437
HpySE526I ACGT 1 cut(s) 55
Kzo9I GATC 5 cut(s) 103, 318, 402, 471, 555
LmnI GCTCC 1 cut(s) 409
MaeII ACGT 1 cut(s) 55
MaeIII GTNAC 3 cut(s) 191, 275, 597
MalI GATC 5 cut(s) 105, 320, 404, 473, 557
MbiI CCGCTC 1 cut(s) 154
MboI GATC 5 cut(s) 103, 318, 402, 471, 555
MboII GAAGA 4 cut(s) 346, 349, 529, 532
MluCI AATT 4 cut(s) 26, 84, 252, 621
MlyI GAGTC 2 cut(s) 122, 161
MnlI CCTC 1 cut(s) 432
MseI TTAA 6 cut(s) 74, 209, 327, 363, 512, 548
MspR9I CCNGG 3 cut(s) 378, 407, 498
MvaI CCWGG 3 cut(s) 378, 407, 498
NdeII GATC 5 cut(s) 103, 318, 402, 471, 555
NmuCI GTSAC 3 cut(s) 191, 275, 597
PfeI GAWTC 4 cut(s) 350, 372, 502, 524
PfoI TCCNGGA 1 cut(s) 405
PkrI GCNGC 1 cut(s) 156
PleI GAGTC 2 cut(s) 121, 161
PpsI GAGTC 2 cut(s) 121, 161
Psp6I CCWGG 3 cut(s) 376, 405, 496
PspGI CCWGG 3 cut(s) 376, 405, 496
RsaI GTAC 3 cut(s) 14, 262, 615
RsaNI GTAC 3 cut(s) 13, 261, 614
SaqAI TTAA 6 cut(s) 74, 209, 327, 363, 512, 548
SatI GCNGC 1 cut(s) 155
Sau3AI GATC 5 cut(s) 103, 318, 402, 471, 555
SchI GAGTC 2 cut(s) 122, 161
ScrFI CCNGG 3 cut(s) 378, 407, 498
SfcI CTRYAG 2 cut(s) 270, 603
SmlI CTYRAG 2 cut(s) 44, 446
SmoI CTYRAG 2 cut(s) 44, 446
Sse9I AATT 4 cut(s) 26, 84, 252, 621
SsiI CCGC 1 cut(s) 154
SspI AATATT 1 cut(s) 573
StyD4I CCNGG 3 cut(s) 376, 405, 496
StyI CCWWGG 2 cut(s) 396, 477
TaaI ACNGT 3 cut(s) 123, 291, 587
TaiI ACGT 1 cut(s) 58
TaqII GACCGA 1 cut(s) 80
TasI AATT 4 cut(s) 26, 84, 252, 621
TatI WGTACW 1 cut(s) 12
TauI GCSGC 1 cut(s) 157
TfiI GAWTC 4 cut(s) 350, 372, 502, 524
Tru1I TTAA 6 cut(s) 74, 209, 327, 363, 512, 548
Tru9I TTAA 6 cut(s) 74, 209, 327, 363, 512, 548
TseFI GTSAC 3 cut(s) 191, 275, 597
Tsp45I GTSAC 3 cut(s) 191, 275, 597
TspDTI ATGAA 3 cut(s) 349, 468, 530
XapI RAATTY 1 cut(s) 26
XcmI CCANNNNNNNNNTGG 1 cut(s) 403
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.