RLG00000007938

Plant mobile domain

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
Physical Location & Seq
Reverse (-)
23200644 .. 23201272
629 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007938

Sequence Viewer

Length: 420 bp
ATGGATTGCACAATTAGAGGTTGGTGGGTTGCCTGTGTTCGACAGCATATCCGATTGGTACGGTTGATGAGTATTGTGATTGCTATCTATTCAAAAGGTTTTTGTTTCATCTTCTTGTTTCTCAATAGATACTACAAGTTAATTTTGCTGGCTAAAGAGTACACCCACCTGGAATTTAGGTGCGACCTTCTCAAGTTTGGACGTGTTATGACCGACGAGTTAAGGGCTGAAATTACTGAAGTGAAGCTTGATCTGATAGAGTCCACACCGTTTAGGGATTTGTTTAGAGCTTTTTATGAGCGGCAAATAATAGACTCTGCTTGTAGGAAGTCTGATAGTGACATCGCCGTGAGATCAACCTTAACCAGAACAAGAGAAAAGGGGATTTTGATTTCATTAAAAGACGATTCCCTGGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

140

Amino Acids

16.5

Weight (kDa)

8.87

Isoelectric Point (pI)

44.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 301
AciI CCGC 1 cut(s) 301
AcsI RAATTY 1 cut(s) 173
AcuI CTGAAG 1 cut(s) 258
AfaI GTAC 2 cut(s) 60, 161
AflIII ACRYGT 1 cut(s) 202
AgsI TTSAA 1 cut(s) 93
AjiI CACGTC 1 cut(s) 203
AjnI CCWGG 2 cut(s) 168, 411
AluBI AGCT 2 cut(s) 247, 290
AluI AGCT 2 cut(s) 247, 290
ApoI RAATTY 1 cut(s) 173
BceAI ACGGC 1 cut(s) 332
BciT130I CCWGG 2 cut(s) 170, 413
BisI GCNGC 1 cut(s) 302
BlsI GCNGC 1 cut(s) 303
Bme1390I CCNGG 2 cut(s) 170, 413
BmgBI CACGTC 1 cut(s) 203
BmrFI CCNGG 2 cut(s) 170, 413
BpuEI CTTGAG 1 cut(s) 176
BsaBI GATNNNNATC 1 cut(s) 83
BsaJI CCNNGG 1 cut(s) 411
Bse8I GATNNNNATC 1 cut(s) 83
BseBI CCWGG 2 cut(s) 170, 413
BseDI CCNNGG 1 cut(s) 411
BseJI GATNNNNATC 1 cut(s) 83
Bsp143I GATC 2 cut(s) 250, 353
BspACI CCGC 1 cut(s) 301
BsrBI CCGCTC 1 cut(s) 301
BssECI CCNNGG 1 cut(s) 411
BssMI GATC 2 cut(s) 250, 353
Bst2UI CCWGG 2 cut(s) 170, 413
Bst4CI ACNGT 2 cut(s) 63, 270
BstC8I GCNNGC 1 cut(s) 150
BstKTI GATC 2 cut(s) 253, 356
BstMBI GATC 2 cut(s) 250, 353
BstNI CCWGG 2 cut(s) 170, 413
BstSCI CCNGG 2 cut(s) 168, 411
BtgZI GCGATG 1 cut(s) 328
BtrI CACGTC 1 cut(s) 203
Cac8I GCNNGC 1 cut(s) 150
Csp6I GTAC 2 cut(s) 59, 160
CviJI RGCY 4 cut(s) 152, 227, 247, 290
CviKI_1 RGCY 4 cut(s) 152, 227, 247, 290
CviQI GTAC 2 cut(s) 59, 160
DpnI GATC 2 cut(s) 252, 355
DpnII GATC 2 cut(s) 250, 353
Eco57I CTGAAG 1 cut(s) 258
EcoRII CCWGG 2 cut(s) 168, 411
FaiI YATR 3 cut(s) 48, 209, 297
FalI AAGNNNNNCTT 2 cut(s) 231, 263
Fnu4HI GCNGC 1 cut(s) 302
Fsp4HI GCNGC 1 cut(s) 302
GluI GCNGC 1 cut(s) 302
HindIII AAGCTT 1 cut(s) 245
HinfI GANTC 3 cut(s) 260, 314, 407
Hpy166II GTNNAC 2 cut(s) 162, 264
Hpy188I TCNGA 3 cut(s) 53, 255, 334
Hpy8I GTNNAC 2 cut(s) 162, 264
Hpy99I CGWCG 1 cut(s) 218
HpyAV CCTTC 1 cut(s) 197
HpyCH4III ACNGT 2 cut(s) 63, 270
HpyCH4IV ACGT 1 cut(s) 202
HpyCH4V TGCA 1 cut(s) 9
HpySE526I ACGT 1 cut(s) 202
Kzo9I GATC 2 cut(s) 250, 353
LpnPI CCDG 6 cut(s) 46, 134, 155, 182, 379, 398
MaeII ACGT 1 cut(s) 202
MaeIII GTNAC 1 cut(s) 338
MalI GATC 2 cut(s) 252, 355
MbiI CCGCTC 1 cut(s) 301
MboI GATC 2 cut(s) 250, 353
MboII GAAGA 1 cut(s) 103
MluCI AATT 4 cut(s) 12, 141, 173, 231
MlyI GAGTC 2 cut(s) 269, 308
MnlI CCTC 1 cut(s) 11
MseI TTAA 4 cut(s) 140, 221, 362, 398
MslI CAYNNNNRTG 1 cut(s) 347
MspR9I CCNGG 2 cut(s) 170, 413
MvaI CCWGG 2 cut(s) 170, 413
NdeII GATC 2 cut(s) 250, 353
NmuCI GTSAC 1 cut(s) 338
PfeI GAWTC 1 cut(s) 407
PkrI GCNGC 1 cut(s) 303
PleI GAGTC 2 cut(s) 268, 308
PpsI GAGTC 2 cut(s) 268, 308
Psp6I CCWGG 2 cut(s) 168, 411
PspGI CCWGG 2 cut(s) 168, 411
RsaI GTAC 2 cut(s) 60, 161
RsaNI GTAC 2 cut(s) 59, 160
RseI CAYNNNNRTG 1 cut(s) 347
SaqAI TTAA 4 cut(s) 140, 221, 362, 398
SatI GCNGC 1 cut(s) 302
Sau3AI GATC 2 cut(s) 250, 353
SchI GAGTC 2 cut(s) 269, 308
ScrFI CCNGG 2 cut(s) 170, 413
SetI ASST 9 cut(s) 22, 100, 171, 182, 189, 205, 249, 292, 362
SmiMI CAYNNNNRTG 1 cut(s) 347
SmlI CTYRAG 1 cut(s) 191
SmoI CTYRAG 1 cut(s) 191
Sse9I AATT 4 cut(s) 12, 141, 173, 231
SsiI CCGC 1 cut(s) 301
StyD4I CCNGG 2 cut(s) 168, 411
TaaI ACNGT 2 cut(s) 63, 270
TaiI ACGT 1 cut(s) 205
TaqI TCGA 1 cut(s) 40
TaqII GACCGA 1 cut(s) 227
TasI AATT 4 cut(s) 12, 141, 173, 231
TatI WGTACW 1 cut(s) 159
TauI GCSGC 1 cut(s) 304
TfiI GAWTC 1 cut(s) 407
Tru1I TTAA 4 cut(s) 140, 221, 362, 398
Tru9I TTAA 4 cut(s) 140, 221, 362, 398
TseFI GTSAC 1 cut(s) 338
Tsp45I GTSAC 1 cut(s) 338
TspDTI ATGAA 2 cut(s) 97, 384
XapI RAATTY 1 cut(s) 173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.