RLG00000015997

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0000441
Physical Location & Seq
Forward (+)
3070221 .. 3071297
1077 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015997

Sequence Viewer

Length: 540 bp
ATGGCTAAAGAGTACACCCACCTGGAATTTAGGTGTGACCTTCTCAAGTTTGGACGTGTTATGACCGACGAGTTAAGGGCTGAAATTACTGAAGTGAAGCTTGAAATCTTAAGTTACAAGCATCCAGAGCAGGGAGACCTTGAATCTCTGTTTATGTCCACGTTTGATTGGCATGGTGAAATCTCAAAACGCTTGGCATTTTTGAAAGATAAGGGTAAATCAATTATTAAGAGCAAGATGATATGGAAACATGTGAAAAGAGAAGGGCAAGTGTGTCAATTTACTTTCACTGTATCAAACAAAGACAGGGACTTGCTTACCTGGTTGGGAAAGAATAATGTTGATCAATTCCCTATTATTTCAAGCAAGGAATGTCCTAAACAAGATCCTTCCAGTGTGGACAGCGGGATTGCTGTGACGTACATTATCAAGCGATTATCGGAAGGTCTTGAATTAGAGTCTACCTTTAAAAAAGGTGCCATGACTCAGCAGAGAGCACATGTTTTGGGAAGGTTCTTAAATGACAACAATGACAATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

180

Amino Acids

20.7

Weight (kDa)

8.36

Isoelectric Point (pI)

36.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 476
AccI GTMKAC 1 cut(s) 461
AciI CCGC 1 cut(s) 405
AclWI GGATC 1 cut(s) 380
AcsI RAATTY 1 cut(s) 26
AcuI CTGAAG 1 cut(s) 111
AfaI GTAC 2 cut(s) 14, 422
AfiI CCNNNNNNNGG 1 cut(s) 131
AflII CTTAAG 1 cut(s) 109
AflIII ACRYGT 3 cut(s) 55, 250, 499
AgsI TTSAA 5 cut(s) 104, 143, 205, 363, 452
AjiI CACGTC 1 cut(s) 56
AjnI CCWGG 2 cut(s) 21, 320
AluBI AGCT 1 cut(s) 100
AluI AGCT 1 cut(s) 100
Alw21I GWGCWC 1 cut(s) 499
Alw26I GTCTC 1 cut(s) 129
AlwI GGATC 1 cut(s) 380
ApoI RAATTY 1 cut(s) 26
AsuHPI GGTGA 1 cut(s) 188
BanI GGYRCC 1 cut(s) 476
Bbv12I GWGCWC 1 cut(s) 499
BciT130I CCWGG 2 cut(s) 23, 322
BclI TGATCA 1 cut(s) 343
BcoDI GTCTC 1 cut(s) 129
BfrI CTTAAG 1 cut(s) 109
Bme1390I CCNGG 2 cut(s) 23, 322
BmgBI CACGTC 1 cut(s) 56
BmiI GGNNCC 1 cut(s) 478
BmrFI CCNGG 2 cut(s) 23, 322
BmsI GCATC 1 cut(s) 130
BpuEI CTTGAG 1 cut(s) 29
BsaI GGTCTC 1 cut(s) 129
Bsc4I CCNNNNNNNGG 1 cut(s) 131
Bse1I ACTGG 1 cut(s) 393
BseBI CCWGG 2 cut(s) 23, 322
BseGI GGATG 1 cut(s) 121
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMII CTCAG 1 cut(s) 500
BseNI ACTGG 1 cut(s) 393
BshNI GGYRCC 1 cut(s) 476
BsiHKAI GWGCWC 1 cut(s) 499
BslFI GGGAC 1 cut(s) 323
BslI CCNNNNNNNGG 1 cut(s) 131
BsmAI GTCTC 1 cut(s) 129
BsmFI GGGAC 1 cut(s) 323
Bso31I GGTCTC 1 cut(s) 129
Bsp1286I GDGCHC 1 cut(s) 499
Bsp143I GATC 2 cut(s) 343, 385
BspACI CCGC 1 cut(s) 405
BspCNI CTCAG 1 cut(s) 499
BspLI GGNNCC 1 cut(s) 478
BspPI GGATC 1 cut(s) 380
BspT107I GGYRCC 1 cut(s) 476
BspTI CTTAAG 1 cut(s) 109
BspTNI GGTCTC 1 cut(s) 129
BsrI ACTGG 1 cut(s) 393
BssMI GATC 2 cut(s) 343, 385
Bst2UI CCWGG 2 cut(s) 23, 322
Bst4CI ACNGT 1 cut(s) 292
BstAFI CTTAAG 1 cut(s) 109
BstDEI CTNAG 1 cut(s) 486
BstF5I GGATG 1 cut(s) 121
BstKTI GATC 2 cut(s) 346, 388
BstMAI GTCTC 1 cut(s) 129
BstMBI GATC 2 cut(s) 343, 385
BstMWI GCNNNNNNNGC 1 cut(s) 127
BstNI CCWGG 2 cut(s) 23, 322
BstNSI RCATGY 2 cut(s) 254, 503
BstSCI CCNGG 2 cut(s) 21, 320
BstX2I RGATCY 1 cut(s) 385
BstYI RGATCY 1 cut(s) 385
BtrI CACGTC 1 cut(s) 56
BtsCI GGATG 1 cut(s) 121
BtsIMutI CAGTG 2 cut(s) 288, 400
CsiI ACCWGGT 1 cut(s) 320
Csp6I GTAC 2 cut(s) 13, 421
CviAII CATG 4 cut(s) 173, 251, 481, 500
CviJI RGCY 3 cut(s) 5, 80, 100
CviKI_1 RGCY 3 cut(s) 5, 80, 100
CviQI GTAC 2 cut(s) 13, 421
DdeI CTNAG 1 cut(s) 486
DpnI GATC 2 cut(s) 345, 387
DpnII GATC 2 cut(s) 343, 385
DraI TTTAAA 1 cut(s) 469
Eco31I GGTCTC 1 cut(s) 129
Eco57I CTGAAG 1 cut(s) 111
EcoRII CCWGG 2 cut(s) 21, 320
FaeI CATG 4 cut(s) 176, 254, 484, 503
FaiI YATR 7 cut(s) 62, 155, 174, 244, 252, 482, 501
FalI AAGNNNNNCTT 2 cut(s) 84, 116
FaqI GGGAC 1 cut(s) 323
FatI CATG 4 cut(s) 172, 250, 480, 499
FauI CCCGC 1 cut(s) 398
FbaI TGATCA 1 cut(s) 343
FblI GTMKAC 1 cut(s) 461
FokI GGATG 1 cut(s) 108
Hin1II CATG 4 cut(s) 176, 254, 484, 503
HindIII AAGCTT 1 cut(s) 98
HinfI GANTC 3 cut(s) 143, 458, 484
HphI GGTGA 1 cut(s) 188
Hpy166II GTNNAC 4 cut(s) 15, 159, 400, 462
Hpy188I TCNGA 1 cut(s) 442
Hpy188III TCNNGA 2 cut(s) 125, 449
Hpy8I GTNNAC 4 cut(s) 15, 159, 400, 462
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 5 cut(s) 50, 257, 399, 437, 504
HpyCH4III ACNGT 1 cut(s) 292
HpyCH4IV ACGT 3 cut(s) 55, 161, 419
HpyF10VI GCNNNNNNNGC 1 cut(s) 127
HpyF3I CTNAG 1 cut(s) 486
HpySE526I ACGT 3 cut(s) 55, 161, 419
Hsp92II CATG 4 cut(s) 176, 254, 484, 503
Ksp22I TGATCA 1 cut(s) 343
Kzo9I GATC 2 cut(s) 343, 385
LpnPI CCDG 8 cut(s) 8, 35, 116, 138, 292, 307, 334, 406
LweI GCATC 1 cut(s) 130
MabI ACCWGGT 1 cut(s) 320
MaeII ACGT 3 cut(s) 55, 161, 419
MaeIII GTNAC 3 cut(s) 35, 113, 415
MalI GATC 2 cut(s) 345, 387
MboI GATC 2 cut(s) 343, 385
MflI RGATCY 1 cut(s) 385
MhlI GDGCHC 1 cut(s) 499
MluCI AATT 7 cut(s) 26, 84, 222, 278, 347, 452, 535
MlyI GAGTC 2 cut(s) 467, 478
MseI TTAA 5 cut(s) 74, 110, 228, 468, 518
MspA1I CMGCKG 1 cut(s) 405
MspCI CTTAAG 1 cut(s) 109
MspR9I CCNGG 2 cut(s) 23, 322
MvaI CCWGG 2 cut(s) 23, 322
MwoI GCNNNNNNNGC 1 cut(s) 127
NdeII GATC 2 cut(s) 343, 385
NlaIII CATG 4 cut(s) 176, 254, 484, 503
NlaIV GGNNCC 1 cut(s) 478
NmuCI GTSAC 2 cut(s) 35, 415
NspI RCATGY 2 cut(s) 254, 503
PciI ACATGT 2 cut(s) 250, 499
PfeI GAWTC 1 cut(s) 143
PleI GAGTC 2 cut(s) 466, 478
PpsI GAGTC 2 cut(s) 466, 478
PscI ACATGT 2 cut(s) 250, 499
Psp6I CCWGG 2 cut(s) 21, 320
PspGI CCWGG 2 cut(s) 21, 320
PspN4I GGNNCC 1 cut(s) 478
PsuI RGATCY 1 cut(s) 385
RsaI GTAC 2 cut(s) 14, 422
RsaNI GTAC 2 cut(s) 13, 421
SaqAI TTAA 5 cut(s) 74, 110, 228, 468, 518
Sau3AI GATC 2 cut(s) 343, 385
SchI GAGTC 2 cut(s) 467, 478
ScrFI CCNGG 2 cut(s) 23, 322
SduI GDGCHC 1 cut(s) 499
SexAI ACCWGGT 1 cut(s) 320
SfaNI GCATC 1 cut(s) 130
SmlI CTYRAG 2 cut(s) 44, 109
SmoI CTYRAG 2 cut(s) 44, 109
Sse9I AATT 7 cut(s) 26, 84, 222, 278, 347, 452, 535
SsiI CCGC 1 cut(s) 405
StyD4I CCNGG 2 cut(s) 21, 320
TaaI ACNGT 1 cut(s) 292
TaiI ACGT 3 cut(s) 58, 164, 422
TaqII GACCGA 1 cut(s) 80
TasI AATT 7 cut(s) 26, 84, 222, 278, 347, 452, 535
TatI WGTACW 1 cut(s) 12
TfiI GAWTC 1 cut(s) 143
Tru1I TTAA 5 cut(s) 74, 110, 228, 468, 518
Tru9I TTAA 5 cut(s) 74, 110, 228, 468, 518
TscAI CASTG 2 cut(s) 295, 400
TseFI GTSAC 2 cut(s) 35, 415
Tsp45I GTSAC 2 cut(s) 35, 415
TspRI CASTG 2 cut(s) 295, 400
Vha464I CTTAAG 1 cut(s) 109
XapI RAATTY 1 cut(s) 26
XceI RCATGY 2 cut(s) 254, 503
XmiI GTMKAC 1 cut(s) 461
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.