RchiOBHm_Chr5g0012151

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0000441
Physical Location & Seq
Reverse (-)
8115157 .. 8115714
558 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ29275

Sequence Viewer

Length: 276 bp
ATGAGTTCTTATTCAAATTGGTGTCTCCGTATTACATTGGGTTTGTACCTCTTCATGAGAAGGTCGCCCCTGTGGCATGGAGTGAAGTCAGGAGTATTTGTTAAGGATGCACTAGCCATCTTGAATGAGGAAGCTGTCGGTGTGCAGGCTATGAATGCATATCTTGAAATCTTAAGTTACAAGCCTCCAGAGCAGGGAGACCCTGAATCTTTGTTTATGTCCACGTTTGATTGGGGTATCTTGGGAATTTGTGACCTTATCTATTCGTTAGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.24

Weight (kDa)

4.83

Isoelectric Point (pI)

65.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 246
AfaI GTAC 1 cut(s) 47
AfiI CCNNNNNNNGG 1 cut(s) 194
AflII CTTAAG 1 cut(s) 172
AgsI TTSAA 3 cut(s) 15, 124, 167
AluBI AGCT 1 cut(s) 134
AluI AGCT 1 cut(s) 134
Alw26I GTCTC 2 cut(s) 29, 192
ApoI RAATTY 1 cut(s) 246
BccI CCATC 1 cut(s) 125
BcoDI GTCTC 2 cut(s) 29, 192
BfaI CTAG 1 cut(s) 113
BfrI CTTAAG 1 cut(s) 172
BglI GCCNNNNNGGC 1 cut(s) 73
BmsI GCATC 1 cut(s) 97
BpmI CTGGAG 1 cut(s) 171
BsaI GGTCTC 1 cut(s) 192
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 1 cut(s) 194
BseGI GGATG 1 cut(s) 112
BseLI CCNNNNNNNGG 1 cut(s) 194
BsgI GTGCAG 1 cut(s) 164
BslI CCNNNNNNNGG 1 cut(s) 194
BsmAI GTCTC 2 cut(s) 29, 192
BsmI GAATGC 1 cut(s) 160
Bso31I GGTCTC 1 cut(s) 192
BspHI TCATGA 1 cut(s) 54
BspTI CTTAAG 1 cut(s) 172
BspTNI GGTCTC 1 cut(s) 192
Bst6I CTCTTC 1 cut(s) 56
BstAFI CTTAAG 1 cut(s) 172
BstC8I GCNNGC 1 cut(s) 147
BstF5I GGATG 1 cut(s) 112
BstMAI GTCTC 2 cut(s) 29, 192
BstMWI GCNNNNNNNGC 3 cut(s) 73, 155, 190
BtsCI GGATG 1 cut(s) 112
Cac8I GCNNGC 1 cut(s) 147
CciI TCATGA 1 cut(s) 54
Csp6I GTAC 1 cut(s) 46
CviAII CATG 2 cut(s) 55, 77
CviJI RGCY 4 cut(s) 116, 134, 149, 184
CviKI_1 RGCY 4 cut(s) 116, 134, 149, 184
CviQI GTAC 1 cut(s) 46
Eam1104I CTCTTC 1 cut(s) 56
EarI CTCTTC 1 cut(s) 56
Eco31I GGTCTC 1 cut(s) 192
EcoT22I ATGCAT 1 cut(s) 160
FaeI CATG 2 cut(s) 58, 80
FaiI YATR 5 cut(s) 56, 78, 152, 160, 218
FatI CATG 2 cut(s) 54, 76
FokI GGATG 1 cut(s) 119
FspBI CTAG 1 cut(s) 113
GsuI CTGGAG 1 cut(s) 171
Hin1II CATG 2 cut(s) 58, 80
HinfI GANTC 1 cut(s) 206
Hpy166II GTNNAC 1 cut(s) 222
Hpy188III TCNNGA 5 cut(s) 55, 90, 121, 164, 188
Hpy8I GTNNAC 1 cut(s) 222
HpyAV CCTTC 1 cut(s) 54
HpyCH4IV ACGT 1 cut(s) 224
HpyCH4V TGCA 3 cut(s) 110, 145, 158
HpyF10VI GCNNNNNNNGC 3 cut(s) 73, 155, 190
HpySE526I ACGT 1 cut(s) 224
Hsp92II CATG 2 cut(s) 58, 80
LpnPI CCDG 6 cut(s) 75, 83, 131, 179, 201, 216
LweI GCATC 1 cut(s) 97
MaeI CTAG 1 cut(s) 113
MaeII ACGT 1 cut(s) 224
MaeIII GTNAC 2 cut(s) 176, 251
MboII GAAGA 1 cut(s) 43
MluCI AATT 2 cut(s) 16, 246
MnlI CCTC 3 cut(s) 59, 121, 195
Mph1103I ATGCAT 1 cut(s) 160
MseI TTAA 2 cut(s) 102, 173
MspCI CTTAAG 1 cut(s) 172
Mva1269I GAATGC 1 cut(s) 160
MwoI GCNNNNNNNGC 3 cut(s) 73, 155, 190
NlaIII CATG 2 cut(s) 58, 80
NmuCI GTSAC 1 cut(s) 251
NsiI ATGCAT 1 cut(s) 160
PagI TCATGA 1 cut(s) 54
PctI GAATGC 1 cut(s) 160
PfeI GAWTC 1 cut(s) 206
RsaI GTAC 1 cut(s) 47
RsaNI GTAC 1 cut(s) 46
SaqAI TTAA 2 cut(s) 102, 173
SetI ASST 5 cut(s) 51, 65, 136, 227, 258
SfaNI GCATC 1 cut(s) 97
SmlI CTYRAG 1 cut(s) 172
SmoI CTYRAG 1 cut(s) 172
Sse9I AATT 2 cut(s) 16, 246
SspMI CTAG 1 cut(s) 113
TaiI ACGT 1 cut(s) 227
TasI AATT 2 cut(s) 16, 246
TfiI GAWTC 1 cut(s) 206
Tru1I TTAA 2 cut(s) 102, 173
Tru9I TTAA 2 cut(s) 102, 173
TseFI GTSAC 1 cut(s) 251
Tsp45I GTSAC 1 cut(s) 251
TspDTI ATGAA 2 cut(s) 43, 167
TspGWI ACGGA 1 cut(s) 17
Vha464I CTTAAG 1 cut(s) 172
XapI RAATTY 1 cut(s) 246
XspI CTAG 1 cut(s) 113
Zsp2I ATGCAT 1 cut(s) 160
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.