Rmu_sc0001296.1_g000006

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001296.1
OG0000441
Physical Location & Seq
Forward (+)
36943 .. 38613
1671 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001296.1_g000006.1.cds

Sequence Viewer

Length: 1434 bp
atggcaaagaaggagtatccctatctagagtacaggtgtgatttattgaagtttggacgtgtgatgacggatgagcttagagcagacataacacaagagaaactagttttgatccagagaacaccatttgggagcttgtttatggcgtattacaatggtacattaatagaatctgcttgcaaaaaatctgatttggaaatagtggctctcttgaagtgttttaaccagcaaaacaaaagttttaatttcggggagttcaccggtactataaccagcaaagacatctctgagttgtttggattaacactcattggggaagaaattaacctagatcagaagaagaagaaggaggatgacgggtttaggacaagacaactgtccggagtcccgaggatgagcaaggcaatattagaacgaaaaaaaaaacatgtaggtaagttgagagggattgaggatgaaaaagattttgtaaggcttgtctgtctctacttttgcgttacattattcctctgcaatagtggtaatgaactcggttggaatgtcctcccatatatagaggatattgaaacaatgtcgcagtatgcatgggcacctttagtgtgtgatcatttaattgaatcgattatgaagatgaatggtcgtcctgaaactgcatgtgggtgtgtaattgctctgccgttttggttttgtgagcggactctattcattgaaccgatgagaggaagggaagtaatggaaccaaaaattgtgaaatggaatttgccggaactttacgctaggatgaaagtggcctctattcttgagatagaggtgaaggagagagatgaggatcagagtacaaatgttatgcctagtggtgagaagcagttatttgaaattgggactacaagcggtacaaaatcaagagaacaaaaaaatgcgactgattttgatcccaacaagatgttccagctgttaccgacccaattctacttggaagaaagccaagagggaccttcaagcaatgaggaagatgtacctgaattggagaaaagggttcaagagtttgctgatttgcttgaggttgagcgagccaaaaatgagactcttagtgcggaaaatttgaaactatgcatggagataggattgctcaggcaagccattcctaaagacgagattccaaatgtgaattcaaggaagttgaggacaaaagaacaatgcaaaaaaccatcattccttgaaggttatatcattggcgacattagagccaaaagaggtaaggaaaagatcattgatgaaataggtgatgctgttgtggaagaactagctgtgaagaaggggaagaaacagactgttgcgcaacaaataattgtgagaaggttaagggttggaaagtttatgtcccaggtaaatgcagaaaagctcaaggaatatttgtccaaagctagcaggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

477

Amino Acids

54.86

Weight (kDa)

6.82

Isoelectric Point (pI)

48.52

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1338
Acc36I ACCTGC 1 cut(s) 1419
AccB1I GGYRCC 1 cut(s) 589
AccBSI CCGCTC 1 cut(s) 694
AccIII TCCGGA 1 cut(s) 380
AciI CCGC 3 cut(s) 694, 891, 1094
AclWI GGATC 3 cut(s) 106, 837, 926
AcsI RAATTY 3 cut(s) 757, 1099, 1168
AfaI GTAC 6 cut(s) 32, 160, 265, 838, 895, 1017
AfiI CCNNNNNNNGG 1 cut(s) 719
AflIII ACRYGT 2 cut(s) 58, 427
AgeI ACCGGT 1 cut(s) 260
AhlI ACTAGT 1 cut(s) 103
AjiI CACGTC 1 cut(s) 59
AjnI CCWGG 1 cut(s) 1383
AjuI GAANNNNNNNTTGG 4 cut(s) 929, 961, 1153, 1185
AluBI AGCT 6 cut(s) 76, 135, 952, 1307, 1402, 1424
AluI AGCT 6 cut(s) 76, 135, 952, 1307, 1402, 1424
Alw26I GTCTC 2 cut(s) 488, 1076
AlwI GGATC 3 cut(s) 106, 837, 926
Ama87I CYCGRG 1 cut(s) 388
Aor13HI TCCGGA 1 cut(s) 380
AoxI GGCC 1 cut(s) 789
ApoI RAATTY 3 cut(s) 757, 1099, 1168
AseI ATTAAT 1 cut(s) 164
AsiGI ACCGGT 1 cut(s) 260
AspLEI GCGC 1 cut(s) 1339
AspS9I GGNCC 1 cut(s) 992
AsuHPI GGTGA 4 cut(s) 250, 823, 869, 1295
AsuNHI GCTAGC 1 cut(s) 1424
AvaI CYCGRG 1 cut(s) 388
AvaII GGWCC 1 cut(s) 992
BaeGI GKGCMC 1 cut(s) 592
BanI GGYRCC 1 cut(s) 589
BccI CCATC 1 cut(s) 1216
BceAI ACGGC 1 cut(s) 661
BciT130I CCWGG 1 cut(s) 1385
BciVI GTATCC 1 cut(s) 27
BclI TGATCA 1 cut(s) 604
BcoDI GTCTC 2 cut(s) 488, 1076
BcuI ACTAGT 1 cut(s) 103
BfaI CTAG 7 cut(s) 26, 104, 329, 777, 852, 1304, 1425
BfuAI ACCTGC 1 cut(s) 1419
BfuI GTATCC 1 cut(s) 27
Bme1390I CCNGG 1 cut(s) 1385
Bme18I GGWCC 1 cut(s) 992
BmeT110I CYCGRG 1 cut(s) 388
BmgBI CACGTC 1 cut(s) 59
BmgT120I GGNCC 1 cut(s) 992
BmiI GGNNCC 3 cut(s) 591, 738, 993
BmrFI CCNGG 1 cut(s) 1385
BmsI GCATC 1 cut(s) 1276
BmtI GCTAGC 1 cut(s) 1428
BoxI GACNNNNGTC 1 cut(s) 376
Bpu10I CCTNAGC 1 cut(s) 1130
BpuEI CTTGAG 3 cut(s) 821, 1079, 1388
Bsa29I ATCGAT 1 cut(s) 620
BsaBI GATNNNNATC 2 cut(s) 828, 930
BsaJI CCNNGG 2 cut(s) 389, 1383
BsaWI WCCGGW 2 cut(s) 260, 380
Bsc4I CCNNNNNNNGG 1 cut(s) 719
Bse118I RCCGGY 1 cut(s) 260
Bse3DI GCAATG 1 cut(s) 1009
Bse8I GATNNNNATC 2 cut(s) 828, 930
BseAI TCCGGA 1 cut(s) 380
BseBI CCWGG 1 cut(s) 1385
BseCI ATCGAT 1 cut(s) 620
BseDI CCNNGG 2 cut(s) 389, 1383
BseGI GGATG 5 cut(s) 76, 358, 399, 460, 786
BseJI GATNNNNATC 2 cut(s) 828, 930
BseLI CCNNNNNNNGG 1 cut(s) 719
BseMI GCAATG 1 cut(s) 1009
BseMII CTCAG 2 cut(s) 279, 1144
BseSI GKGCMC 1 cut(s) 592
BshFI GGCC 1 cut(s) 791
BshNI GGYRCC 1 cut(s) 589
BshTI ACCGGT 1 cut(s) 260
BshVI ATCGAT 1 cut(s) 620
BsiHKCI CYCGRG 1 cut(s) 388
BsiSI CCGG 3 cut(s) 261, 381, 764
BslFI GGGAC 4 cut(s) 371, 895, 1005, 1366
BslI CCNNNNNNNGG 1 cut(s) 719
BsmAI GTCTC 2 cut(s) 488, 1076
BsmFI GGGAC 4 cut(s) 371, 895, 1005, 1366
BsnI GGCC 1 cut(s) 791
BsoBI CYCGRG 1 cut(s) 388
Bsp1286I GDGCHC 1 cut(s) 592
Bsp13I TCCGGA 1 cut(s) 380
Bsp143I GATC 6 cut(s) 111, 331, 604, 829, 931, 1266
BspACI CCGC 3 cut(s) 694, 891, 1094
BspANI GGCC 1 cut(s) 791
BspCNI CTCAG 2 cut(s) 280, 1143
BspDI ATCGAT 1 cut(s) 620
BspEI TCCGGA 1 cut(s) 380
BspLI GGNNCC 3 cut(s) 591, 738, 993
BspMI ACCTGC 1 cut(s) 1419
BspOI GCTAGC 1 cut(s) 1428
BspPI GGATC 3 cut(s) 106, 837, 926
BspT107I GGYRCC 1 cut(s) 589
BsrBI CCGCTC 1 cut(s) 694
BsrDI GCAATG 1 cut(s) 1009
BsrFI RCCGGY 1 cut(s) 260
BssAI RCCGGY 1 cut(s) 260
BssECI CCNNGG 2 cut(s) 389, 1383
BssMI GATC 6 cut(s) 111, 331, 604, 829, 931, 1266
Bst2UI CCWGG 1 cut(s) 1385
Bst4CI ACNGT 2 cut(s) 378, 1333
BstC8I GCNNGC 4 cut(s) 178, 1071, 1137, 1426
BstDEI CTNAG 4 cut(s) 77, 288, 1088, 1130
BstF5I GGATG 5 cut(s) 76, 358, 399, 460, 786
BstHHI GCGC 1 cut(s) 1339
BstKTI GATC 6 cut(s) 114, 334, 607, 832, 934, 1269
BstMAI GTCTC 2 cut(s) 488, 1076
BstMBI GATC 6 cut(s) 111, 331, 604, 829, 931, 1266
BstNI CCWGG 1 cut(s) 1385
BstNSI RCATGY 2 cut(s) 431, 657
BstPAI GACNNNNGTC 1 cut(s) 376
BstSCI CCNGG 1 cut(s) 1383
BstSLI GKGCMC 1 cut(s) 592
Bsu15I ATCGAT 1 cut(s) 620
BsuI GTATCC 1 cut(s) 27
BsuRI GGCC 1 cut(s) 791
BsuTUI ATCGAT 1 cut(s) 620
BtrI CACGTC 1 cut(s) 59
BtsCI GGATG 5 cut(s) 76, 358, 399, 460, 786
BveI ACCTGC 1 cut(s) 1419
Cac8I GCNNGC 4 cut(s) 178, 1071, 1137, 1426
CfoI GCGC 1 cut(s) 1339
Cfr10I RCCGGY 1 cut(s) 260
Cfr13I GGNCC 1 cut(s) 992
ClaI ATCGAT 1 cut(s) 620
Csp6I GTAC 6 cut(s) 31, 159, 264, 837, 894, 1016
CspAI ACCGGT 1 cut(s) 260
CviAII CATG 4 cut(s) 428, 585, 654, 1114
CviQI GTAC 6 cut(s) 31, 159, 264, 837, 894, 1016
DdeI CTNAG 4 cut(s) 77, 288, 1088, 1130
DpnI GATC 6 cut(s) 113, 333, 606, 831, 933, 1268
DpnII GATC 6 cut(s) 111, 331, 604, 829, 931, 1266
Eco47I GGWCC 1 cut(s) 992
Eco88I CYCGRG 1 cut(s) 388
EcoO109I RGGNCCY 1 cut(s) 992
EcoRI GAATTC 1 cut(s) 1168
EcoRII CCWGG 1 cut(s) 1383
EcoT22I ATGCAT 2 cut(s) 586, 1115
FaeI CATG 4 cut(s) 431, 588, 657, 1117
FaqI GGGAC 4 cut(s) 371, 895, 1005, 1366
FatI CATG 4 cut(s) 427, 584, 653, 1113
FbaI TGATCA 1 cut(s) 604
FokI GGATG 5 cut(s) 83, 365, 406, 467, 793
FspBI CTAG 7 cut(s) 26, 104, 329, 777, 852, 1304, 1425
FspI TGCGCA 1 cut(s) 1338
GlaI GCGC 1 cut(s) 1338
HaeIII GGCC 1 cut(s) 791
HapII CCGG 3 cut(s) 261, 381, 764
HhaI GCGC 1 cut(s) 1339
Hin1II CATG 4 cut(s) 431, 588, 657, 1117
Hin6I GCGC 1 cut(s) 1337
HinP1I GCGC 1 cut(s) 1337
HinfI GANTC 6 cut(s) 170, 384, 617, 697, 1084, 1156
HpaII CCGG 3 cut(s) 261, 381, 764
HphI GGTGA 4 cut(s) 250, 823, 869, 1295
Hpy166II GTNNAC 1 cut(s) 258
Hpy188I TCNGA 4 cut(s) 190, 289, 336, 834
Hpy188III TCNNGA 9 cut(s) 26, 115, 211, 381, 388, 644, 800, 903, 1040
Hpy8I GTNNAC 1 cut(s) 258
HpyAV CCTTC 8 cut(s) 4, 340, 717, 808, 1005, 1214, 1309, 1350
HpyCH4III ACNGT 2 cut(s) 378, 1333
HpyCH4IV ACGT 1 cut(s) 58
HpyCH4V TGCA 7 cut(s) 180, 513, 584, 653, 1113, 1200, 1394
HpyF3I CTNAG 4 cut(s) 77, 288, 1088, 1130
HpySE526I ACGT 1 cut(s) 58
Hsp92II CATG 4 cut(s) 431, 588, 657, 1117
HspAI GCGC 1 cut(s) 1337
Kpn2I TCCGGA 1 cut(s) 380
Ksp22I TGATCA 1 cut(s) 604
Kzo9I GATC 6 cut(s) 111, 331, 604, 829, 931, 1266
LmnI GCTCC 1 cut(s) 132
LweI GCATC 1 cut(s) 1276
MaeI CTAG 7 cut(s) 26, 104, 329, 777, 852, 1304, 1425
MaeII ACGT 1 cut(s) 58
MaeIII GTNAC 2 cut(s) 496, 954
MalI GATC 6 cut(s) 113, 333, 606, 831, 933, 1268
MbiI CCGCTC 1 cut(s) 694
MboI GATC 6 cut(s) 111, 331, 604, 829, 931, 1266
MhlI GDGCHC 1 cut(s) 592
MlyI GAGTC 3 cut(s) 393, 691, 1078
MmeI TCCRAC 2 cut(s) 515, 1348
Mph1103I ATGCAT 2 cut(s) 586, 1115
MroI TCCGGA 1 cut(s) 380
MseI TTAA 7 cut(s) 164, 222, 243, 302, 324, 611, 1361
MslI CAYNNNNRTG 1 cut(s) 658
MspA1I CMGCKG 1 cut(s) 952
MspI CCGG 3 cut(s) 261, 381, 764
MspR9I CCNGG 1 cut(s) 1385
MvaI CCWGG 1 cut(s) 1385
NdeII GATC 6 cut(s) 111, 331, 604, 829, 931, 1266
NheI GCTAGC 1 cut(s) 1424
NlaIII CATG 4 cut(s) 431, 588, 657, 1117
NlaIV GGNNCC 3 cut(s) 591, 738, 993
NsbI TGCGCA 1 cut(s) 1338
NsiI ATGCAT 2 cut(s) 586, 1115
NspI RCATGY 2 cut(s) 431, 657
PciI ACATGT 1 cut(s) 427
PfeI GAWTC 3 cut(s) 170, 617, 1156
PinAI ACCGGT 1 cut(s) 260
PleI GAGTC 3 cut(s) 392, 691, 1078
PpsI GAGTC 3 cut(s) 392, 691, 1078
PpuMI RGGWCCY 1 cut(s) 992
PscI ACATGT 1 cut(s) 427
PshAI GACNNNNGTC 1 cut(s) 376
PshBI ATTAAT 1 cut(s) 164
Psp5II RGGWCCY 1 cut(s) 992
Psp6I CCWGG 1 cut(s) 1383
PspGI CCWGG 1 cut(s) 1383
PspN4I GGNNCC 3 cut(s) 591, 738, 993
PspPI GGNCC 1 cut(s) 992
PspPPI RGGWCCY 1 cut(s) 992
PvuII CAGCTG 1 cut(s) 952
RsaI GTAC 6 cut(s) 32, 160, 265, 838, 895, 1017
RsaNI GTAC 6 cut(s) 31, 159, 264, 837, 894, 1016
RseI CAYNNNNRTG 1 cut(s) 658
SaqAI TTAA 7 cut(s) 164, 222, 243, 302, 324, 611, 1361
Sau3AI GATC 6 cut(s) 111, 331, 604, 829, 931, 1266
Sau96I GGNCC 1 cut(s) 992
SchI GAGTC 3 cut(s) 393, 691, 1078
ScrFI CCNGG 1 cut(s) 1385
SduI GDGCHC 1 cut(s) 592
SfaNI GCATC 1 cut(s) 1276
SinI GGWCC 1 cut(s) 992
SmiMI CAYNNNNRTG 1 cut(s) 658
SmlI CTYRAG 3 cut(s) 800, 1058, 1403
SmoI CTYRAG 3 cut(s) 800, 1058, 1403
SpeI ACTAGT 1 cut(s) 103
SsiI CCGC 3 cut(s) 694, 891, 1094
SspI AATATT 2 cut(s) 408, 1412
SspMI CTAG 7 cut(s) 26, 104, 329, 777, 852, 1304, 1425
StyD4I CCNGG 1 cut(s) 1383
TaaI ACNGT 2 cut(s) 378, 1333
TaiI ACGT 1 cut(s) 61
TaqI TCGA 1 cut(s) 620
TatI WGTACW 2 cut(s) 30, 836
TfiI GAWTC 3 cut(s) 170, 617, 1156
Tru1I TTAA 7 cut(s) 164, 222, 243, 302, 324, 611, 1361
Tru9I TTAA 7 cut(s) 164, 222, 243, 302, 324, 611, 1361
TspDTI ATGAA 7 cut(s) 471, 540, 641, 647, 694, 797, 1290
TspGWI ACGGA 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 992
VspI ATTAAT 1 cut(s) 164
XapI RAATTY 3 cut(s) 757, 1099, 1168
XbaI TCTAGA 1 cut(s) 25
XceI RCATGY 2 cut(s) 431, 657
XspI CTAG 7 cut(s) 26, 104, 329, 777, 852, 1304, 1425
Zsp2I ATGCAT 2 cut(s) 586, 1115
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.