Rw5G016600

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0000441
Physical Location & Seq
Reverse (-)
21053454 .. 21055832
2379 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G016600.1

Sequence Viewer

Length: 855 bp
ATGTCTCTCTATGCCTGGGCACCCGCAGTGAAGAATTACTTGGACAGTTGTGGATTCCAATGCTGTTTTGGTTTTTTGTCTTTATTGATTTCCTTGCAGTTTTGGTTTTGTGAACGTACCCGGTTCATTGAACCAATTAAAGGATGGGATGAACTGAAGCCAAAATTCTTGAAATGGAATTTACTAGAGTTGTATGCAAGGATGAAGGTTGAGGATATACATGAAATCAAGGAAAGTGATCAACAACAATCCCTTGCTGAACTTAAAACACCTAGCATTGAGAAGAGTGTGCTAGCTATTACCTGTACTAAAGAAGGGGGCTCTAAAGAGAAGTGTGTGGATGATTTTGAACCTGGTAAGATGTTTCAGTTGTTGCCAACTCAATTTTACATAGACGATGGTCAGCCAGGGCCTTCAAGCATAGAGGTGCGTAGTAAAGATATGGAGACAAGGGTTCAAGAGTTGGCTGATTTGCTTGAAATTGAACAAGCTCATAATAAGCGCCTTCATAGTGAAAATGAGAGACTGCAGACAGAGATTAATATGCTCCGTCCGAGTAACAAAGTGGTTGAGAATGAGAATCAGATTTCAATGAACCTGAGGTCGAGGTCTAAATGCAAAAAACCCCTTATTTTAGCCGACTTCATCACTGAGAGGACCAAGAAAGGAAAAGCAAAAGCTGAAATTATTAAGAAGGATGATGATGATTTTGTCGTACAATCGCCTTTCAAGAAAAAGAAGACACCAACAGTAGATCAAAATATAGGTGTGAGGAGACTACGGGTTGGTATGTGCATGACGATTCCTGATGCAGAGAGGCTTAAGGTTTATTTGGCGAAAAGAGAGAACAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

284

Amino Acids

32.93

Weight (kDa)

8.65

Isoelectric Point (pI)

57.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 19
AciI CCGC 1 cut(s) 24
AcsI RAATTY 2 cut(s) 164, 178
AcuI CTGAAG 1 cut(s) 176
AfaI GTAC 3 cut(s) 118, 307, 717
AfiI CCNNNNNNNGG 1 cut(s) 140
AflII CTTAAG 1 cut(s) 821
AgsI TTSAA 9 cut(s) 131, 172, 350, 417, 458, 479, 485, 591, 730
AjnI CCWGG 3 cut(s) 14, 352, 406
AjuI GAANNNNNNNTTGG 2 cut(s) 23, 55
AluBI AGCT 3 cut(s) 296, 491, 680
AluI AGCT 3 cut(s) 296, 491, 680
Alw26I GTCTC 4 cut(s) 9, 440, 517, 769
AoxI GGCC 1 cut(s) 410
ApoI RAATTY 2 cut(s) 164, 178
AseI ATTAAT 1 cut(s) 540
AspLEI GCGC 1 cut(s) 504
AspS9I GGNCC 2 cut(s) 410, 657
AsuC2I CCSGG 1 cut(s) 121
AsuNHI GCTAGC 1 cut(s) 292
AvaII GGWCC 1 cut(s) 657
AxyI CCTNAGG 1 cut(s) 599
BaeGI GKGCMC 1 cut(s) 22
BanI GGYRCC 1 cut(s) 19
BanII GRGCYC 1 cut(s) 323
BbsI GAAGAC 1 cut(s) 746
BccI CCATC 2 cut(s) 138, 392
BciT130I CCWGG 3 cut(s) 16, 354, 408
BclI TGATCA 1 cut(s) 238
BcnI CCSGG 1 cut(s) 121
BcoDI GTCTC 4 cut(s) 9, 440, 517, 769
BfaI CTAG 3 cut(s) 185, 273, 293
BfmI CTRYAG 1 cut(s) 527
BfoI RGCGCY 1 cut(s) 505
BfrI CTTAAG 1 cut(s) 821
Bme1390I CCNGG 4 cut(s) 16, 121, 354, 408
Bme18I GGWCC 1 cut(s) 657
BmgT120I GGNCC 2 cut(s) 410, 657
BmiI GGNNCC 1 cut(s) 21
BmrFI CCNGG 4 cut(s) 16, 121, 354, 408
BmsI GCATC 1 cut(s) 799
BmtI GCTAGC 1 cut(s) 296
BoxI GACNNNNGTC 1 cut(s) 399
BpiI GAAGAC 1 cut(s) 746
BpuMI CCSGG 1 cut(s) 121
BsaJI CCNNGG 2 cut(s) 15, 407
Bsc4I CCNNNNNNNGG 1 cut(s) 140
Bse21I CCTNAGG 1 cut(s) 599
BseBI CCWGG 3 cut(s) 16, 354, 408
BseDI CCNNGG 2 cut(s) 15, 407
BseGI GGATG 5 cut(s) 149, 154, 207, 346, 703
BseLI CCNNNNNNNGG 1 cut(s) 140
BseMII CTCAG 2 cut(s) 590, 642
BseRI GAGGAG 1 cut(s) 787
BseSI GKGCMC 1 cut(s) 22
BshFI GGCC 1 cut(s) 412
BshNI GGYRCC 1 cut(s) 19
BsiSI CCGG 1 cut(s) 121
BslI CCNNNNNNNGG 1 cut(s) 140
BsmAI GTCTC 4 cut(s) 9, 440, 517, 769
BsnI GGCC 1 cut(s) 412
Bsp1286I GDGCHC 2 cut(s) 22, 323
Bsp143I GATC 2 cut(s) 238, 754
BspACI CCGC 1 cut(s) 24
BspANI GGCC 1 cut(s) 412
BspCNI CTCAG 2 cut(s) 591, 643
BspLI GGNNCC 1 cut(s) 21
BspMAI CTGCAG 1 cut(s) 531
BspOI GCTAGC 1 cut(s) 296
BspT107I GGYRCC 1 cut(s) 19
BspTI CTTAAG 1 cut(s) 821
BssECI CCNNGG 2 cut(s) 15, 407
BssMI GATC 2 cut(s) 238, 754
Bst2UI CCWGG 3 cut(s) 16, 354, 408
Bst4CI ACNGT 2 cut(s) 47, 751
Bst6I CTCTTC 1 cut(s) 278
BstAFI CTTAAG 1 cut(s) 821
BstC8I GCNNGC 1 cut(s) 294
BstDEI CTNAG 2 cut(s) 599, 651
BstF5I GGATG 5 cut(s) 149, 154, 207, 346, 703
BstH2I RGCGCY 1 cut(s) 505
BstHHI GCGC 1 cut(s) 504
BstKTI GATC 2 cut(s) 241, 757
BstMAI GTCTC 4 cut(s) 9, 440, 517, 769
BstMBI GATC 2 cut(s) 238, 754
BstNI CCWGG 3 cut(s) 16, 354, 408
BstPAI GACNNNNGTC 1 cut(s) 399
BstSCI CCNGG 4 cut(s) 14, 119, 352, 406
BstSFI CTRYAG 1 cut(s) 527
BstSLI GKGCMC 1 cut(s) 22
BstV2I GAAGAC 1 cut(s) 746
Bsu36I CCTNAGG 1 cut(s) 599
BsuRI GGCC 1 cut(s) 412
BtsCI GGATG 5 cut(s) 149, 154, 207, 346, 703
BtsI GCAGTG 1 cut(s) 33
BtsIMutI CAGTG 2 cut(s) 33, 648
Cac8I GCNNGC 1 cut(s) 294
CfoI GCGC 1 cut(s) 504
Cfr13I GGNCC 2 cut(s) 410, 657
CsiI ACCWGGT 1 cut(s) 352
Csp6I GTAC 3 cut(s) 117, 306, 716
CviAII CATG 2 cut(s) 221, 796
CviQI GTAC 3 cut(s) 117, 306, 716
DdeI CTNAG 2 cut(s) 599, 651
DpnI GATC 2 cut(s) 240, 756
DpnII GATC 2 cut(s) 238, 754
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
Eco24I GRGCYC 1 cut(s) 323
Eco47I GGWCC 1 cut(s) 657
Eco57I CTGAAG 1 cut(s) 176
Eco81I CCTNAGG 1 cut(s) 599
EcoO109I RGGNCCY 1 cut(s) 410
EcoRII CCWGG 3 cut(s) 14, 352, 406
EcoT38I GRGCYC 1 cut(s) 323
FaeI CATG 2 cut(s) 224, 799
FalI AAGNNNNNCTT 2 cut(s) 23, 55
FatI CATG 2 cut(s) 220, 795
FauI CCCGC 1 cut(s) 31
FbaI TGATCA 1 cut(s) 238
FokI GGATG 5 cut(s) 156, 161, 214, 353, 710
FriOI GRGCYC 1 cut(s) 323
FspBI CTAG 3 cut(s) 185, 273, 293
GlaI GCGC 1 cut(s) 503
HaeII RGCGCY 1 cut(s) 505
HaeIII GGCC 1 cut(s) 412
HapII CCGG 1 cut(s) 121
HhaI GCGC 1 cut(s) 504
Hin1II CATG 2 cut(s) 224, 799
Hin6I GCGC 1 cut(s) 502
HinP1I GCGC 1 cut(s) 502
HinfI GANTC 3 cut(s) 54, 580, 802
HpaII CCGG 1 cut(s) 121
Hpy166II GTNNAC 1 cut(s) 113
Hpy188I TCNGA 2 cut(s) 555, 585
Hpy188III TCNNGA 4 cut(s) 169, 458, 730, 806
Hpy8I GTNNAC 1 cut(s) 113
HpyAV CCTTC 5 cut(s) 199, 308, 423, 515, 688
HpyCH4III ACNGT 2 cut(s) 47, 751
HpyCH4IV ACGT 1 cut(s) 115
HpyCH4V TGCA 6 cut(s) 97, 197, 529, 618, 795, 812
HpyF3I CTNAG 2 cut(s) 599, 651
HpySE526I ACGT 1 cut(s) 115
Hsp92II CATG 2 cut(s) 224, 799
HspAI GCGC 1 cut(s) 502
Ksp22I TGATCA 1 cut(s) 238
Kzo9I GATC 2 cut(s) 238, 754
LmnI GCTCC 1 cut(s) 552
LpnPI CCDG 9 cut(s) 28, 134, 316, 339, 366, 393, 420, 611, 819
LweI GCATC 1 cut(s) 799
MabI ACCWGGT 1 cut(s) 352
MaeI CTAG 3 cut(s) 185, 273, 293
MaeII ACGT 1 cut(s) 115
MaeIII GTNAC 1 cut(s) 557
MalI GATC 2 cut(s) 240, 756
MboI GATC 2 cut(s) 238, 754
MboII GAAGA 3 cut(s) 43, 295, 751
MhlI GDGCHC 2 cut(s) 22, 323
MluCI AATT 7 cut(s) 34, 135, 164, 178, 383, 480, 684
MnlI CCTC 7 cut(s) 205, 418, 594, 600, 648, 765, 810
MseI TTAA 5 cut(s) 138, 264, 540, 690, 822
MslI CAYNNNNRTG 1 cut(s) 425
MspCI CTTAAG 1 cut(s) 821
MspI CCGG 1 cut(s) 121
MspR9I CCNGG 4 cut(s) 16, 121, 354, 408
MvaI CCWGG 3 cut(s) 16, 354, 408
NciI CCSGG 1 cut(s) 121
NdeII GATC 2 cut(s) 238, 754
NheI GCTAGC 1 cut(s) 292
NlaIII CATG 2 cut(s) 224, 799
NlaIV GGNNCC 1 cut(s) 21
PfeI GAWTC 3 cut(s) 54, 580, 802
PshAI GACNNNNGTC 1 cut(s) 399
PshBI ATTAAT 1 cut(s) 540
Psp6I CCWGG 3 cut(s) 14, 352, 406
PspGI CCWGG 3 cut(s) 14, 352, 406
PspN4I GGNNCC 1 cut(s) 21
PspPI GGNCC 2 cut(s) 410, 657
PstI CTGCAG 1 cut(s) 531
RsaI GTAC 3 cut(s) 118, 307, 717
RsaNI GTAC 3 cut(s) 117, 306, 716
RseI CAYNNNNRTG 1 cut(s) 425
SaqAI TTAA 5 cut(s) 138, 264, 540, 690, 822
Sau3AI GATC 2 cut(s) 238, 754
Sau96I GGNCC 2 cut(s) 410, 657
ScrFI CCNGG 4 cut(s) 16, 121, 354, 408
SduI GDGCHC 2 cut(s) 22, 323
SexAI ACCWGGT 1 cut(s) 352
SfaNI GCATC 1 cut(s) 799
SfcI CTRYAG 1 cut(s) 527
SinI GGWCC 1 cut(s) 657
SmiMI CAYNNNNRTG 1 cut(s) 425
SmlI CTYRAG 1 cut(s) 821
SmoI CTYRAG 1 cut(s) 821
Sse9I AATT 7 cut(s) 34, 135, 164, 178, 383, 480, 684
SsiI CCGC 1 cut(s) 24
SspMI CTAG 3 cut(s) 185, 273, 293
StyD4I CCNGG 4 cut(s) 14, 119, 352, 406
TaaI ACNGT 2 cut(s) 47, 751
TaiI ACGT 1 cut(s) 118
TaqI TCGA 1 cut(s) 605
TasI AATT 7 cut(s) 34, 135, 164, 178, 383, 480, 684
TatI WGTACW 1 cut(s) 305
TfiI GAWTC 3 cut(s) 54, 580, 802
Tru1I TTAA 5 cut(s) 138, 264, 540, 690, 822
Tru9I TTAA 5 cut(s) 138, 264, 540, 690, 822
TscAI CASTG 2 cut(s) 33, 655
TspDTI ATGAA 7 cut(s) 115, 165, 218, 237, 497, 608, 634
TspGWI ACGGA 1 cut(s) 539
TspRI CASTG 2 cut(s) 33, 655
Vha464I CTTAAG 1 cut(s) 821
VpaK11BI GGWCC 1 cut(s) 657
VspI ATTAAT 1 cut(s) 540
XapI RAATTY 2 cut(s) 164, 178
XcmI CCANNNNNNNNNTGG 2 cut(s) 65, 141
XspI CTAG 3 cut(s) 185, 273, 293
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.