Rw3G027670

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0000441
Physical Location & Seq
Reverse (-)
39766760 .. 39769154
2395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G027670.1

Sequence Viewer

Length: 1320 bp
ATGAATGGTCGGCCTTGTGGTTGTCTCATTGCCCTGTTGTTGTATGCAAGGATGAAGGTTGCGGATATACATGAAATCAAGGAAAGTGATCAACAACAATCCCTTGGTGAACTTAAAACACCTAGCATTGAGAAGAGTGTGCTAGCTATTACCTGTACTGAAGAAGGGGGCTCTAAAGAGAGGTATGTGGATGATTTTGAACCTGGTAAGATGTTTCAGTTGTTACAAACTCAATATTACATAGATGATGGTCAGCCAGGGCCTTCAAGCACAGAGGTGCGTAGTAAAGATATGGAGACAAGGCTTCAAGAGTTGGCTGATTTGCTTGAAATTGAACAAGCTCGTAATAAGCGCCTTTGTAGTGAAAATGAGAGACTGCAGACAGAAATTAATATGCTCCGTCCGAGTAACAAAGTGGTTGAGAATGAGAATCAGATTTCAATGAACTTGAGGTCGAGGTCTAAATGTAAAAAACCCCTTATTTTAGCTGACTTCATCACTGAGAGGACCAAGAAAGGAAAAGCAAAAGCTGAAATTGTTATGAAGGAAGAAGATGATTTTGTCGTACAATCGCCATCCAAGAAAAAGAAGATACCAACAGTAGATCAAAACATAGGTGCGAGGAGACTACAGGTTGGTAAGTGCTTCACGATTCCTGATGTAGAGAGGCTCAAGGTTTATTTGGCGAAAAGAGAGAACAAGTCGCCCCTGTGGCATGGAGTGAAGTCAGGAGTATTTGTTAAGGATGTACTAGCCATCTTGCATGAGGAAGCTATCAGTGTGCAGGCTATGGATGCATATCTTGAAATCTTAAGTCACAAGCATCCAGAGCAGGGAAACCCTGTATCTCTGTTTATGTCCACGTTTGATTGGGATGATATGAAAGGCGAAGACACAACAGCAGGAGTTGAAGCTTACTATGAACCTTTGTTCAATAATGTCTGCAATATGGACTTTGTTTTTCTCCCAATTATACATAAGAAACAGCAGCAATTCAGCTTGTTAGTCCTAAACAAAGAACTGCAACGTTGGGAACACTATAATACTCAAAGACCAAAGCAAACTACATTAGTGGACCCTTGCTTTGAAGATGCATCCAGATTGTTGGGAAGGAATAATGTTGATCATTTCCCTATTATTTCAAGCAAGGAATGTCCTAAACAAGATCCTTCCAGTGTGGACAACGGGATTGCTGTGATGTACATTATCAAGCGATTATCGAAAGGTCTTGAATTAGAGTCTACCTTTAAAAAAGGTGCCATGACTCAGCAGAGAGCACATATTTTGGGAAGGTTCTTAAATGACAACAATGACGGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

439

Amino Acids

50.13

Weight (kDa)

6.54

Isoelectric Point (pI)

56.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1256
AccI GTMKAC 1 cut(s) 1241
AciI CCGC 1 cut(s) 62
AclI AACGTT 1 cut(s) 1027
AclWI GGATC 1 cut(s) 1160
AcuI CTGAAG 1 cut(s) 180
AfaI GTAC 4 cut(s) 157, 567, 750, 1202
AfiI CCNNNNNNNGG 1 cut(s) 833
AflII CTTAAG 1 cut(s) 811
AjnI CCWGG 2 cut(s) 202, 256
AleI CACNNNNGTG 1 cut(s) 275
AluBI AGCT 7 cut(s) 146, 341, 488, 530, 773, 914, 999
AluI AGCT 7 cut(s) 146, 341, 488, 530, 773, 914, 999
Alw21I GWGCWC 1 cut(s) 1279
Alw26I GTCTC 4 cut(s) 29, 290, 367, 619
AlwI GGATC 1 cut(s) 1160
AoxI GGCC 2 cut(s) 11, 260
ApeKI GCWGC 1 cut(s) 988
ArsI GACNNNNNNTTYG 2 cut(s) 1067, 1099
AseI ATTAAT 1 cut(s) 390
AspLEI GCGC 1 cut(s) 354
AspS9I GGNCC 3 cut(s) 260, 507, 1075
AsuHPI GGTGA 1 cut(s) 119
AsuNHI GCTAGC 1 cut(s) 142
AvaII GGWCC 2 cut(s) 507, 1075
BanI GGYRCC 1 cut(s) 1256
BanII GRGCYC 1 cut(s) 173
BbsI GAAGAC 1 cut(s) 897
Bbv12I GWGCWC 1 cut(s) 1279
BbvI GCAGC 1 cut(s) 1000
BccI CCATC 3 cut(s) 242, 583, 764
BciT130I CCWGG 2 cut(s) 204, 258
BclI TGATCA 2 cut(s) 88, 1123
BcoDI GTCTC 4 cut(s) 29, 290, 367, 619
BfaI CTAG 3 cut(s) 123, 143, 752
BfmI CTRYAG 2 cut(s) 377, 629
BfoI RGCGCY 1 cut(s) 355
BfrI CTTAAG 1 cut(s) 811
BglI GCCNNNNNGGC 1 cut(s) 712
BisI GCNGC 1 cut(s) 989
BlsI GCNGC 1 cut(s) 990
Bme1390I CCNGG 2 cut(s) 204, 258
Bme18I GGWCC 2 cut(s) 507, 1075
BmgT120I GGNCC 3 cut(s) 260, 507, 1075
BmiI GGNNCC 2 cut(s) 1077, 1258
BmrFI CCNGG 2 cut(s) 204, 258
BmsI GCATC 4 cut(s) 784, 832, 1081, 1103
BmtI GCTAGC 1 cut(s) 146
BpiI GAAGAC 1 cut(s) 897
BpuEI CTTGAG 2 cut(s) 469, 656
BsaBI GATNNNNATC 1 cut(s) 798
BsaJI CCNNGG 2 cut(s) 103, 257
BsaXI ACNNNNNCTCC 2 cut(s) 723, 753
Bsc4I CCNNNNNNNGG 1 cut(s) 833
Bse1I ACTGG 1 cut(s) 1173
Bse3DI GCAATG 1 cut(s) 27
Bse8I GATNNNNATC 1 cut(s) 798
BseBI CCWGG 2 cut(s) 204, 258
BseDI CCNNGG 2 cut(s) 103, 257
BseGI GGATG 8 cut(s) 57, 196, 575, 751, 799, 823, 880, 1094
BseJI GATNNNNATC 1 cut(s) 798
BseLI CCNNNNNNNGG 1 cut(s) 833
BseMI GCAATG 1 cut(s) 27
BseMII CTCAG 2 cut(s) 492, 1280
BseNI ACTGG 1 cut(s) 1173
BseRI GAGGAG 1 cut(s) 637
BseXI GCAGC 1 cut(s) 1000
BsgI GTGCAG 1 cut(s) 803
BshFI GGCC 2 cut(s) 13, 262
BshNI GGYRCC 1 cut(s) 1256
BsiHKAI GWGCWC 1 cut(s) 1279
BslI CCNNNNNNNGG 1 cut(s) 833
BsmAI GTCTC 4 cut(s) 29, 290, 367, 619
BsnI GGCC 2 cut(s) 13, 262
Bsp1286I GDGCHC 2 cut(s) 173, 1279
Bsp1407I TGTACA 1 cut(s) 1200
Bsp143I GATC 4 cut(s) 88, 604, 1123, 1165
BspACI CCGC 1 cut(s) 62
BspANI GGCC 2 cut(s) 13, 262
BspCNI CTCAG 2 cut(s) 493, 1279
BspLI GGNNCC 2 cut(s) 1077, 1258
BspMAI CTGCAG 1 cut(s) 381
BspOI GCTAGC 1 cut(s) 146
BspPI GGATC 1 cut(s) 1160
BspT107I GGYRCC 1 cut(s) 1256
BspTI CTTAAG 1 cut(s) 811
BsrDI GCAATG 1 cut(s) 27
BsrGI TGTACA 1 cut(s) 1200
BsrI ACTGG 1 cut(s) 1173
BssECI CCNNGG 2 cut(s) 103, 257
BssMI GATC 4 cut(s) 88, 604, 1123, 1165
BssT1I CCWWGG 1 cut(s) 103
Bst2UI CCWGG 2 cut(s) 204, 258
Bst4CI ACNGT 2 cut(s) 601, 1316
Bst6I CTCTTC 1 cut(s) 128
BstAFI CTTAAG 1 cut(s) 811
BstAUI TGTACA 1 cut(s) 1200
BstC8I GCNNGC 2 cut(s) 144, 786
BstDEI CTNAG 2 cut(s) 501, 1266
BstF5I GGATG 8 cut(s) 57, 196, 575, 751, 799, 823, 880, 1094
BstH2I RGCGCY 1 cut(s) 355
BstHHI GCGC 1 cut(s) 354
BstKTI GATC 4 cut(s) 91, 607, 1126, 1168
BstMAI GTCTC 4 cut(s) 29, 290, 367, 619
BstMBI GATC 4 cut(s) 88, 604, 1123, 1165
BstMWI GCNNNNNNNGC 3 cut(s) 712, 794, 829
BstNI CCWGG 2 cut(s) 204, 258
BstSCI CCNGG 2 cut(s) 202, 256
BstSFI CTRYAG 2 cut(s) 377, 629
BstV1I GCAGC 1 cut(s) 1000
BstV2I GAAGAC 1 cut(s) 897
BstX2I RGATCY 1 cut(s) 1165
BstXI CCANNNNNNTGG 1 cut(s) 1105
BstYI RGATCY 1 cut(s) 1165
BsuRI GGCC 2 cut(s) 13, 262
BtsCI GGATG 8 cut(s) 57, 196, 575, 751, 799, 823, 880, 1094
BtsIMutI CAGTG 3 cut(s) 498, 784, 1180
Cac8I GCNNGC 2 cut(s) 144, 786
CfoI GCGC 1 cut(s) 354
Cfr13I GGNCC 3 cut(s) 260, 507, 1075
CsiI ACCWGGT 1 cut(s) 202
Csp6I GTAC 4 cut(s) 156, 566, 749, 1201
CviAII CATG 4 cut(s) 71, 716, 764, 1261
CviQI GTAC 4 cut(s) 156, 566, 749, 1201
DdeI CTNAG 2 cut(s) 501, 1266
DpnI GATC 4 cut(s) 90, 606, 1125, 1167
DpnII GATC 4 cut(s) 88, 604, 1123, 1165
DraI TTTAAA 1 cut(s) 1249
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
Eco130I CCWWGG 1 cut(s) 103
Eco24I GRGCYC 1 cut(s) 173
Eco47I GGWCC 2 cut(s) 507, 1075
Eco57I CTGAAG 1 cut(s) 180
EcoO109I RGGNCCY 1 cut(s) 260
EcoRII CCWGG 2 cut(s) 202, 256
EcoT14I CCWWGG 1 cut(s) 103
EcoT22I ATGCAT 2 cut(s) 799, 1096
EcoT38I GRGCYC 1 cut(s) 173
ErhI CCWWGG 1 cut(s) 103
FaeI CATG 4 cut(s) 74, 719, 767, 1264
FatI CATG 4 cut(s) 70, 715, 763, 1260
FbaI TGATCA 2 cut(s) 88, 1123
FblI GTMKAC 1 cut(s) 1241
Fnu4HI GCNGC 1 cut(s) 989
FokI GGATG 8 cut(s) 64, 203, 562, 758, 806, 810, 887, 1081
FriOI GRGCYC 1 cut(s) 173
Fsp4HI GCNGC 1 cut(s) 989
FspBI CTAG 3 cut(s) 123, 143, 752
GlaI GCGC 1 cut(s) 353
GluI GCNGC 1 cut(s) 989
HaeII RGCGCY 1 cut(s) 355
HaeIII GGCC 2 cut(s) 13, 262
HhaI GCGC 1 cut(s) 354
Hin1II CATG 4 cut(s) 74, 719, 767, 1264
Hin6I GCGC 1 cut(s) 352
HinP1I GCGC 1 cut(s) 352
HindIII AAGCTT 1 cut(s) 912
HinfI GANTC 4 cut(s) 430, 652, 1238, 1264
HphI GGTGA 1 cut(s) 119
Hpy166II GTNNAC 5 cut(s) 110, 861, 1075, 1180, 1242
Hpy188I TCNGA 2 cut(s) 405, 435
Hpy188III TCNNGA 8 cut(s) 308, 649, 656, 729, 803, 827, 1098, 1229
Hpy8I GTNNAC 5 cut(s) 110, 861, 1075, 1180, 1242
HpyAV CCTTC 7 cut(s) 49, 158, 273, 538, 1104, 1179, 1284
HpyCH4III ACNGT 2 cut(s) 601, 1316
HpyCH4IV ACGT 2 cut(s) 863, 1027
HpyCH4V TGCA 8 cut(s) 47, 379, 763, 784, 797, 945, 1024, 1094
HpyF10VI GCNNNNNNNGC 3 cut(s) 712, 794, 829
HpyF3I CTNAG 2 cut(s) 501, 1266
HpySE526I ACGT 2 cut(s) 863, 1027
Hsp92II CATG 4 cut(s) 74, 719, 767, 1264
HspAI GCGC 1 cut(s) 352
Ksp22I TGATCA 2 cut(s) 88, 1123
Kzo9I GATC 4 cut(s) 88, 604, 1123, 1165
LmnI GCTCC 1 cut(s) 402
Lsp1109I GCAGC 1 cut(s) 1000
LweI GCATC 4 cut(s) 784, 832, 1081, 1103
MabI ACCWGGT 1 cut(s) 202
MaeI CTAG 3 cut(s) 123, 143, 752
MaeII ACGT 2 cut(s) 863, 1027
MaeIII GTNAC 3 cut(s) 222, 407, 815
MalI GATC 4 cut(s) 90, 606, 1125, 1167
MboI GATC 4 cut(s) 88, 604, 1123, 1165
MboII GAAGA 7 cut(s) 145, 173, 560, 563, 601, 902, 1100
MflI RGATCY 1 cut(s) 1165
MhlI GDGCHC 2 cut(s) 173, 1279
MluCI AATT 6 cut(s) 330, 387, 534, 969, 992, 1232
MlyI GAGTC 2 cut(s) 1247, 1258
MnlI CCTC 8 cut(s) 174, 268, 444, 450, 498, 615, 660, 760
Mph1103I ATGCAT 2 cut(s) 799, 1096
MseI TTAA 6 cut(s) 114, 390, 741, 812, 1248, 1298
MslI CAYNNNNRTG 1 cut(s) 275
MspCI CTTAAG 1 cut(s) 811
MspR9I CCNGG 2 cut(s) 204, 258
MvaI CCWGG 2 cut(s) 204, 258
MwoI GCNNNNNNNGC 3 cut(s) 712, 794, 829
NdeII GATC 4 cut(s) 88, 604, 1123, 1165
NheI GCTAGC 1 cut(s) 142
NlaIII CATG 4 cut(s) 74, 719, 767, 1264
NlaIV GGNNCC 2 cut(s) 1077, 1258
NmuCI GTSAC 1 cut(s) 815
NsiI ATGCAT 2 cut(s) 799, 1096
OliI CACNNNNGTG 1 cut(s) 275
PfeI GAWTC 2 cut(s) 430, 652
PkrI GCNGC 1 cut(s) 990
PleI GAGTC 2 cut(s) 1246, 1258
PpsI GAGTC 2 cut(s) 1246, 1258
PshBI ATTAAT 1 cut(s) 390
Psp1406I AACGTT 1 cut(s) 1027
Psp6I CCWGG 2 cut(s) 202, 256
PspGI CCWGG 2 cut(s) 202, 256
PspN4I GGNNCC 2 cut(s) 1077, 1258
PspPI GGNCC 3 cut(s) 260, 507, 1075
PstI CTGCAG 1 cut(s) 381
PsuI RGATCY 1 cut(s) 1165
RsaI GTAC 4 cut(s) 157, 567, 750, 1202
RsaNI GTAC 4 cut(s) 156, 566, 749, 1201
RseI CAYNNNNRTG 1 cut(s) 275
SaqAI TTAA 6 cut(s) 114, 390, 741, 812, 1248, 1298
SatI GCNGC 1 cut(s) 989
Sau3AI GATC 4 cut(s) 88, 604, 1123, 1165
Sau96I GGNCC 3 cut(s) 260, 507, 1075
SchI GAGTC 2 cut(s) 1247, 1258
ScrFI CCNGG 2 cut(s) 204, 258
SduI GDGCHC 2 cut(s) 173, 1279
SexAI ACCWGGT 1 cut(s) 202
SfaNI GCATC 4 cut(s) 784, 832, 1081, 1103
SfcI CTRYAG 2 cut(s) 377, 629
SinI GGWCC 2 cut(s) 507, 1075
SmiMI CAYNNNNRTG 1 cut(s) 275
SmlI CTYRAG 3 cut(s) 448, 671, 811
SmoI CTYRAG 3 cut(s) 448, 671, 811
Sse9I AATT 6 cut(s) 330, 387, 534, 969, 992, 1232
SsiI CCGC 1 cut(s) 62
SspI AATATT 1 cut(s) 236
SspMI CTAG 3 cut(s) 123, 143, 752
StyD4I CCNGG 2 cut(s) 202, 256
StyI CCWWGG 1 cut(s) 103
TaaI ACNGT 2 cut(s) 601, 1316
TaiI ACGT 2 cut(s) 866, 1030
TaqI TCGA 2 cut(s) 455, 1220
TasI AATT 6 cut(s) 330, 387, 534, 969, 992, 1232
TatI WGTACW 3 cut(s) 155, 748, 1200
TfiI GAWTC 2 cut(s) 430, 652
Tru1I TTAA 6 cut(s) 114, 390, 741, 812, 1248, 1298
Tru9I TTAA 6 cut(s) 114, 390, 741, 812, 1248, 1298
TscAI CASTG 3 cut(s) 505, 784, 1180
TseFI GTSAC 1 cut(s) 815
TseI GCWGC 1 cut(s) 988
Tsp45I GTSAC 1 cut(s) 815
TspDTI ATGAA 8 cut(s) 17, 68, 87, 458, 484, 557, 896, 936
TspGWI ACGGA 1 cut(s) 389
TspRI CASTG 3 cut(s) 505, 784, 1180
Vha464I CTTAAG 1 cut(s) 811
VpaK11BI GGWCC 2 cut(s) 507, 1075
VspI ATTAAT 1 cut(s) 390
XmiI GTMKAC 1 cut(s) 1241
XspI CTAG 3 cut(s) 123, 143, 752
Zsp2I ATGCAT 2 cut(s) 799, 1096
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.