FvH4_5g28462

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0000441
Physical Location & Seq
Forward (+)
19623333 .. 19623841
509 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g28462.t1

Sequence Viewer

Length: 483 bp
ATGTTCCAATTGTTACCAAGTCAGGACTACCTAGATGATATTGAACCGGGGCCTTCAAGCAATGACGCGATGGACAAAAGGCTTGATGAGTTGGCCGCTTTGCTAAAAAATGAACAAGCTCGTAACGAGATTCTTTGTAATGAAAATAAGAGATTGGAGTCAGAGATTGAGATGCTTCGTCGGTCCAAAAATTTGGTTGAGGTTGAGAAGCAGACTTCGAGGACCTTGAGGTCGAGGTCAGAGTGTAAAAAACCGTCCTTTCTGGTGGACTATATTACTGACAATTCCAGAAAAGGGAAAGGGAAATTCCAAGTTGTGAACAATGCTGACGACGACGACTTTGTCCAATCGAGCCCCAAGAAGAAGAAGGTACCCTCAGTAGGTCAAAACATAGCAGTGAGAAGACACCGGGTTGGTAAGTGCATGGCAGCTCCTTATGCACAGAAGTTGAAGGGTTATTTGGCAAAAGGAGACCGCATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

161

Amino Acids

18.26

Weight (kDa)

9.34

Isoelectric Point (pI)

72.69

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 229, 341
Acc65I GGTACC 1 cut(s) 370
AccB1I GGYRCC 1 cut(s) 370
AccII CGCG 1 cut(s) 68
AciI CCGC 2 cut(s) 96, 475
AcoI YGGCCR 1 cut(s) 93
AcsI RAATTY 2 cut(s) 190, 305
AfaI GTAC 1 cut(s) 372
AfiI CCNNNNNNNGG 2 cut(s) 294, 380
AgsI TTSAA 3 cut(s) 44, 57, 451
AjuI GAANNNNNNNTTGG 2 cut(s) 443, 475
AluBI AGCT 2 cut(s) 119, 431
AluI AGCT 2 cut(s) 119, 431
Alw26I GTCTC 1 cut(s) 465
AoxI GGCC 2 cut(s) 50, 93
ApeKI GCWGC 1 cut(s) 428
ApoI RAATTY 2 cut(s) 190, 305
ArsI GACNNNNNNTTYG 2 cut(s) 323, 355
Asp718I GGTACC 1 cut(s) 370
AspS9I GGNCC 3 cut(s) 50, 183, 222
AsuC2I CCSGG 2 cut(s) 48, 410
AvaII GGWCC 2 cut(s) 183, 222
BanI GGYRCC 1 cut(s) 370
BanII GRGCYC 1 cut(s) 356
BbsI GAAGAC 1 cut(s) 409
BbvI GCAGC 1 cut(s) 440
BccI CCATC 1 cut(s) 64
BcnI CCSGG 2 cut(s) 48, 410
BcoDI GTCTC 1 cut(s) 465
BfaI CTAG 1 cut(s) 32
BisI GCNGC 2 cut(s) 96, 429
BlsI GCNGC 2 cut(s) 97, 430
Bme1390I CCNGG 2 cut(s) 48, 410
Bme18I GGWCC 2 cut(s) 183, 222
BmgT120I GGNCC 3 cut(s) 50, 183, 222
BmiI GGNNCC 2 cut(s) 51, 372
BmrFI CCNGG 2 cut(s) 48, 410
BmsI GCATC 1 cut(s) 162
BpiI GAAGAC 1 cut(s) 409
BpuEI CTTGAG 1 cut(s) 247
BpuMI CCSGG 2 cut(s) 48, 410
BsaI GGTCTC 1 cut(s) 465
BsaJI CCNNGG 1 cut(s) 47
Bsc4I CCNNNNNNNGG 2 cut(s) 294, 380
Bse3DI GCAATG 1 cut(s) 67
BseDI CCNNGG 1 cut(s) 47
BseLI CCNNNNNNNGG 2 cut(s) 294, 380
BseMI GCAATG 1 cut(s) 67
BseMII CTCAG 1 cut(s) 390
BseXI GCAGC 1 cut(s) 440
Bsh1236I CGCG 1 cut(s) 68
BshFI GGCC 2 cut(s) 52, 95
BshNI GGYRCC 1 cut(s) 370
BsiSI CCGG 2 cut(s) 47, 409
BslI CCNNNNNNNGG 2 cut(s) 294, 380
BsmAI GTCTC 1 cut(s) 465
BsnI GGCC 2 cut(s) 52, 95
Bso31I GGTCTC 1 cut(s) 465
Bsp1286I GDGCHC 1 cut(s) 356
BspACI CCGC 2 cut(s) 96, 475
BspANI GGCC 2 cut(s) 52, 95
BspCNI CTCAG 1 cut(s) 389
BspFNI CGCG 1 cut(s) 68
BspLI GGNNCC 2 cut(s) 51, 372
BspT107I GGYRCC 1 cut(s) 370
BspTNI GGTCTC 1 cut(s) 465
BsrDI GCAATG 1 cut(s) 67
BssECI CCNNGG 1 cut(s) 47
Bst4CI ACNGT 1 cut(s) 255
BstDEI CTNAG 1 cut(s) 376
BstFNI CGCG 1 cut(s) 68
BstMAI GTCTC 1 cut(s) 465
BstMWI GCNNNNNNNGC 1 cut(s) 437
BstNSI RCATGY 1 cut(s) 481
BstSCI CCNGG 2 cut(s) 46, 408
BstUI CGCG 1 cut(s) 68
BstV1I GCAGC 1 cut(s) 440
BstV2I GAAGAC 1 cut(s) 409
BstXI CCANNNNNNTGG 1 cut(s) 193
BsuRI GGCC 2 cut(s) 52, 95
BtgZI GCGATG 1 cut(s) 83
BtsI GCAGTG 1 cut(s) 402
BtsIMutI CAGTG 1 cut(s) 402
Cfr13I GGNCC 3 cut(s) 50, 183, 222
CseI GACGC 1 cut(s) 74
Csp6I GTAC 1 cut(s) 371
CviAII CATG 2 cut(s) 424, 478
CviJI RGCY 6 cut(s) 52, 82, 95, 119, 354, 431
CviKI_1 RGCY 6 cut(s) 52, 82, 95, 119, 354, 431
CviQI GTAC 1 cut(s) 371
DdeI CTNAG 1 cut(s) 376
DrdI GACNNNNNNGTC 2 cut(s) 229, 341
DseDI GACNNNNNNGTC 2 cut(s) 229, 341
EaeI YGGCCR 1 cut(s) 93
Eco24I GRGCYC 1 cut(s) 356
Eco31I GGTCTC 1 cut(s) 465
Eco47I GGWCC 2 cut(s) 183, 222
EcoO109I RGGNCCY 2 cut(s) 50, 222
EcoT38I GRGCYC 1 cut(s) 356
FaeI CATG 2 cut(s) 427, 481
FaiI YATR 5 cut(s) 273, 392, 425, 438, 479
FatI CATG 2 cut(s) 423, 477
Fnu4HI GCNGC 2 cut(s) 96, 429
FriOI GRGCYC 1 cut(s) 356
Fsp4HI GCNGC 2 cut(s) 96, 429
FspBI CTAG 1 cut(s) 32
GluI GCNGC 2 cut(s) 96, 429
HaeIII GGCC 2 cut(s) 52, 95
HapII CCGG 2 cut(s) 47, 409
HgaI GACGC 1 cut(s) 74
Hin1II CATG 2 cut(s) 427, 481
HinfI GANTC 2 cut(s) 130, 158
HpaII CCGG 2 cut(s) 47, 409
Hpy166II GTNNAC 2 cut(s) 268, 319
Hpy188I TCNGA 2 cut(s) 163, 241
Hpy188III TCNNGA 2 cut(s) 23, 288
Hpy8I GTNNAC 2 cut(s) 268, 319
Hpy99I CGWCG 3 cut(s) 183, 335, 338
HpyAV CCTTC 3 cut(s) 63, 361, 445
HpyCH4III ACNGT 1 cut(s) 255
HpyCH4V TGCA 2 cut(s) 423, 440
HpyF10VI GCNNNNNNNGC 1 cut(s) 437
HpyF3I CTNAG 1 cut(s) 376
Hsp92II CATG 2 cut(s) 427, 481
KpnI GGTACC 1 cut(s) 374
LmnI GCTCC 1 cut(s) 436
LpnPI CCDG 5 cut(s) 8, 60, 248, 301, 422
Lsp1109I GCAGC 1 cut(s) 440
LweI GCATC 1 cut(s) 162
MaeI CTAG 1 cut(s) 32
MaeIII GTNAC 2 cut(s) 12, 122
MboII GAAGA 3 cut(s) 373, 376, 414
MfeI CAATTG 1 cut(s) 8
MhlI GDGCHC 1 cut(s) 356
MluCI AATT 4 cut(s) 8, 190, 283, 305
MlyI GAGTC 1 cut(s) 167
MnlI CCTC 5 cut(s) 193, 213, 222, 228, 385
MslI CAYNNNNRTG 1 cut(s) 395
MspI CCGG 2 cut(s) 47, 409
MspR9I CCNGG 2 cut(s) 48, 410
MunI CAATTG 1 cut(s) 8
MvnI CGCG 1 cut(s) 68
MwoI GCNNNNNNNGC 1 cut(s) 437
NciI CCSGG 2 cut(s) 48, 410
NlaIII CATG 2 cut(s) 427, 481
NlaIV GGNNCC 2 cut(s) 51, 372
NspI RCATGY 1 cut(s) 481
PfeI GAWTC 1 cut(s) 130
PflFI GACNNNGTC 1 cut(s) 341
PkrI GCNGC 2 cut(s) 97, 430
PleI GAGTC 1 cut(s) 166
PpsI GAGTC 1 cut(s) 166
PpuMI RGGWCCY 1 cut(s) 222
Psp5II RGGWCCY 1 cut(s) 222
PspN4I GGNNCC 2 cut(s) 51, 372
PspPI GGNCC 3 cut(s) 50, 183, 222
PspPPI RGGWCCY 1 cut(s) 222
PsyI GACNNNGTC 1 cut(s) 341
RsaI GTAC 1 cut(s) 372
RsaNI GTAC 1 cut(s) 371
RseI CAYNNNNRTG 1 cut(s) 395
SatI GCNGC 2 cut(s) 96, 429
Sau96I GGNCC 3 cut(s) 50, 183, 222
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 2 cut(s) 48, 410
SduI GDGCHC 1 cut(s) 356
SetI ASST 9 cut(s) 33, 121, 204, 227, 233, 239, 372, 385, 433
SfaNI GCATC 1 cut(s) 162
SinI GGWCC 2 cut(s) 183, 222
SmiMI CAYNNNNRTG 1 cut(s) 395
SmlI CTYRAG 1 cut(s) 226
SmoI CTYRAG 1 cut(s) 226
Sse9I AATT 4 cut(s) 8, 190, 283, 305
SsiI CCGC 2 cut(s) 96, 475
SspMI CTAG 1 cut(s) 32
StyD4I CCNGG 2 cut(s) 46, 408
TaaI ACNGT 1 cut(s) 255
TaqI TCGA 3 cut(s) 218, 233, 350
TaqII GACCGA 1 cut(s) 171
TasI AATT 4 cut(s) 8, 190, 283, 305
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 1 cut(s) 130
TscAI CASTG 1 cut(s) 402
TseI GCWGC 1 cut(s) 428
TspDTI ATGAA 2 cut(s) 126, 156
TspRI CASTG 1 cut(s) 402
Tth111I GACNNNGTC 1 cut(s) 341
VpaK11BI GGWCC 2 cut(s) 183, 222
XapI RAATTY 2 cut(s) 190, 305
XceI RCATGY 1 cut(s) 481
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.