Rh1DG121500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000441
Physical Location & Seq
Reverse (-)
22148004 .. 22156175
8172 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG121500.1

Sequence Viewer

Length: 564 bp
ATGGCTACTCTTCTTGTAACCGCCTTCAGCCAAAACTCGCGGTATGTAGACCTTGGAATTGCTCGGTTGTTTTCTCAAGATGGAGTAGAGAATGAAGAAGAGAATGCACAGGCTGGTGTTTATGATAGGTACCGGTATCAGAGAGGTAGCTTCACTAACAAAGCTTTAATCAAAAGTTTTCTATGTGGTATGACCTTAATCAAAGGTTTATCCGAATATGGATCCGAATACAAGCTCTCGAATGAAGACCGGGACTTGCTTATCTGGTTGGGAGGTAACTCTGTTGAACATTTTCCTATAAGATCTAACAAGGAATGTCCACAACAAGATTCTGGAAGTGTGGATTGTGAGATTGGAGTGATGTACATTGTCAAGAAATTATCAGAAGGGGGAGTGGCGAAATCTACCTTAACCAAAGAATATAATTCAGAGAACGTTTCCTTGTTTTTCTCCTTGTACCAAGTACCAACAACGTCCAGGAGAGAGTCAGACATAATTTGCACGGCCAAGCTTCGAAAGGACGAGTACCCACAAAACCAATTGGACCAGAATGCCTACAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

187

Amino Acids

21.16

Weight (kDa)

5.17

Isoelectric Point (pI)

39.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 129
AccB1I GGYRCC 1 cut(s) 129
AccI GTMKAC 1 cut(s) 48
AccII CGCG 1 cut(s) 40
AciI CCGC 2 cut(s) 21, 40
AclI AACGTT 1 cut(s) 435
AclWI GGATC 2 cut(s) 216, 229
AcoI YGGCCR 1 cut(s) 504
AcuI CTGAAG 1 cut(s) 10
AfaI GTAC 5 cut(s) 131, 365, 458, 465, 527
AgeI ACCGGT 1 cut(s) 132
AgsI TTSAA 1 cut(s) 287
AjnI CCWGG 1 cut(s) 476
AluBI AGCT 4 cut(s) 150, 164, 235, 511
AluI AGCT 4 cut(s) 150, 164, 235, 511
AlwI GGATC 2 cut(s) 216, 229
AoxI GGCC 1 cut(s) 504
AsiGI ACCGGT 1 cut(s) 132
Asp700I GAANNNNTTC 1 cut(s) 291
Asp718I GGTACC 1 cut(s) 129
AspS9I GGNCC 1 cut(s) 544
AsuC2I CCSGG 1 cut(s) 251
AsuII TTCGAA 1 cut(s) 514
AvaII GGWCC 1 cut(s) 544
BamHI GGATCC 1 cut(s) 221
BanI GGYRCC 1 cut(s) 129
BbsI GAAGAC 1 cut(s) 252
BccI CCATC 1 cut(s) 74
BceAI ACGGC 1 cut(s) 519
BciT130I CCWGG 1 cut(s) 478
BcnI CCSGG 1 cut(s) 251
BglII AGATCT 1 cut(s) 302
Bme1390I CCNGG 2 cut(s) 251, 478
Bme18I GGWCC 1 cut(s) 544
BmgT120I GGNCC 1 cut(s) 544
BmiI GGNNCC 2 cut(s) 131, 223
BmrFI CCNGG 2 cut(s) 251, 478
BpiI GAAGAC 1 cut(s) 252
Bpu14I TTCGAA 1 cut(s) 514
BpuEI CTTGAG 1 cut(s) 60
BpuMI CCSGG 1 cut(s) 251
BsaJI CCNNGG 1 cut(s) 52
BsaWI WCCGGW 1 cut(s) 132
Bse118I RCCGGY 1 cut(s) 132
BseBI CCWGG 1 cut(s) 478
BseDI CCNNGG 1 cut(s) 52
Bsh1236I CGCG 1 cut(s) 40
BshFI GGCC 1 cut(s) 506
BshNI GGYRCC 1 cut(s) 129
BshTI ACCGGT 1 cut(s) 132
BsiSI CCGG 2 cut(s) 133, 250
BslFI GGGAC 1 cut(s) 266
BsmFI GGGAC 1 cut(s) 266
BsmI GAATGC 2 cut(s) 109, 556
BsnI GGCC 1 cut(s) 506
Bsp119I TTCGAA 1 cut(s) 514
Bsp1407I TGTACA 1 cut(s) 363
Bsp143I GATC 2 cut(s) 221, 302
BspACI CCGC 2 cut(s) 21, 40
BspANI GGCC 1 cut(s) 506
BspFNI CGCG 1 cut(s) 40
BspLI GGNNCC 2 cut(s) 131, 223
BspPI GGATC 2 cut(s) 216, 229
BspT104I TTCGAA 1 cut(s) 514
BspT107I GGYRCC 1 cut(s) 129
BsrFI RCCGGY 1 cut(s) 132
BsrGI TGTACA 1 cut(s) 363
BssAI RCCGGY 1 cut(s) 132
BssECI CCNNGG 1 cut(s) 52
BssMI GATC 2 cut(s) 221, 302
BssT1I CCWWGG 1 cut(s) 52
Bst2UI CCWGG 1 cut(s) 478
Bst6I CTCTTC 2 cut(s) 15, 93
BstAUI TGTACA 1 cut(s) 363
BstBI TTCGAA 1 cut(s) 514
BstFNI CGCG 1 cut(s) 40
BstKTI GATC 2 cut(s) 224, 305
BstMBI GATC 2 cut(s) 221, 302
BstNI CCWGG 1 cut(s) 478
BstSCI CCNGG 2 cut(s) 249, 476
BstUI CGCG 1 cut(s) 40
BstV2I GAAGAC 1 cut(s) 252
BstX2I RGATCY 2 cut(s) 221, 302
BstYI RGATCY 2 cut(s) 221, 302
BsuRI GGCC 1 cut(s) 506
Cfr10I RCCGGY 1 cut(s) 132
Cfr13I GGNCC 1 cut(s) 544
Csp6I GTAC 5 cut(s) 130, 364, 457, 464, 526
CspAI ACCGGT 1 cut(s) 132
CviJI RGCY 8 cut(s) 5, 30, 113, 150, 164, 235, 506, 511
CviKI_1 RGCY 8 cut(s) 5, 30, 113, 150, 164, 235, 506, 511
CviQI GTAC 5 cut(s) 130, 364, 457, 464, 526
DpnI GATC 2 cut(s) 223, 304
DpnII GATC 2 cut(s) 221, 302
EaeI YGGCCR 1 cut(s) 504
Eam1104I CTCTTC 2 cut(s) 15, 93
EarI CTCTTC 2 cut(s) 15, 93
Eco130I CCWWGG 1 cut(s) 52
Eco47I GGWCC 1 cut(s) 544
Eco57I CTGAAG 1 cut(s) 10
EcoRII CCWGG 1 cut(s) 476
EcoT14I CCWWGG 1 cut(s) 52
ErhI CCWWGG 1 cut(s) 52
FaiI YATR 8 cut(s) 45, 123, 184, 191, 219, 299, 423, 494
FaqI GGGAC 1 cut(s) 266
FblI GTMKAC 1 cut(s) 48
HaeIII GGCC 1 cut(s) 506
HapII CCGG 2 cut(s) 133, 250
HindIII AAGCTT 2 cut(s) 162, 509
HinfI GANTC 2 cut(s) 329, 485
HpaII CCGG 2 cut(s) 133, 250
Hpy166II GTNNAC 2 cut(s) 49, 320
Hpy188I TCNGA 6 cut(s) 141, 214, 226, 385, 430, 490
Hpy188III TCNNGA 4 cut(s) 77, 238, 333, 373
Hpy8I GTNNAC 2 cut(s) 49, 320
HpyAV CCTTC 2 cut(s) 34, 380
HpyCH4IV ACGT 2 cut(s) 435, 473
HpyCH4V TGCA 2 cut(s) 107, 501
HpySE526I ACGT 2 cut(s) 435, 473
KpnI GGTACC 1 cut(s) 133
Kzo9I GATC 2 cut(s) 221, 302
LpnPI CCDG 9 cut(s) 95, 99, 146, 250, 263, 318, 463, 490, 560
MaeII ACGT 2 cut(s) 435, 473
MaeIII GTNAC 2 cut(s) 16, 275
MalI GATC 2 cut(s) 223, 304
MboI GATC 2 cut(s) 221, 302
MboII GAAGA 3 cut(s) 107, 110, 257
MfeI CAATTG 1 cut(s) 539
MflI RGATCY 2 cut(s) 221, 302
MluCI AATT 5 cut(s) 57, 377, 424, 495, 539
MlyI GAGTC 1 cut(s) 494
MnlI CCTC 2 cut(s) 137, 266
MroXI GAANNNNTTC 1 cut(s) 291
MseI TTAA 3 cut(s) 167, 197, 410
MspI CCGG 2 cut(s) 133, 250
MspR9I CCNGG 2 cut(s) 251, 478
MunI CAATTG 1 cut(s) 539
Mva1269I GAATGC 2 cut(s) 109, 556
MvaI CCWGG 1 cut(s) 478
MvnI CGCG 1 cut(s) 40
NciI CCSGG 1 cut(s) 251
NdeII GATC 2 cut(s) 221, 302
NlaIV GGNNCC 2 cut(s) 131, 223
NspV TTCGAA 1 cut(s) 514
PctI GAATGC 2 cut(s) 109, 556
PdmI GAANNNNTTC 1 cut(s) 291
PfeI GAWTC 1 cut(s) 329
PfoI TCCNGGA 1 cut(s) 476
PinAI ACCGGT 1 cut(s) 132
PleI GAGTC 1 cut(s) 493
PpsI GAGTC 1 cut(s) 493
Psp1406I AACGTT 1 cut(s) 435
Psp6I CCWGG 1 cut(s) 476
PspGI CCWGG 1 cut(s) 476
PspN4I GGNNCC 2 cut(s) 131, 223
PspPI GGNCC 1 cut(s) 544
PsuI RGATCY 2 cut(s) 221, 302
RsaI GTAC 5 cut(s) 131, 365, 458, 465, 527
RsaNI GTAC 5 cut(s) 130, 364, 457, 464, 526
SaqAI TTAA 3 cut(s) 167, 197, 410
Sau3AI GATC 2 cut(s) 221, 302
Sau96I GGNCC 1 cut(s) 544
SchI GAGTC 1 cut(s) 494
ScrFI CCNGG 2 cut(s) 251, 478
SfuI TTCGAA 1 cut(s) 514
SinI GGWCC 1 cut(s) 544
SmlI CTYRAG 1 cut(s) 75
SmoI CTYRAG 1 cut(s) 75
Sse9I AATT 5 cut(s) 57, 377, 424, 495, 539
SsiI CCGC 2 cut(s) 21, 40
StyD4I CCNGG 2 cut(s) 249, 476
StyI CCWWGG 1 cut(s) 52
TaiI ACGT 2 cut(s) 438, 476
TaqI TCGA 2 cut(s) 239, 514
TasI AATT 5 cut(s) 57, 377, 424, 495, 539
TatI WGTACW 1 cut(s) 363
TfiI GAWTC 1 cut(s) 329
Tru1I TTAA 3 cut(s) 167, 197, 410
Tru9I TTAA 3 cut(s) 167, 197, 410
TspDTI ATGAA 2 cut(s) 108, 258
VpaK11BI GGWCC 1 cut(s) 544
XmiI GTMKAC 1 cut(s) 48
XmnI GAANNNNTTC 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.