Rw7G006450

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0000441
Physical Location & Seq
Reverse (-)
5511085 .. 5513161
2077 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G006450.1

Sequence Viewer

Length: 513 bp
ATGCGACTGATTTTGATCCCAACAAGATGTTCCAGCTGTTACCGACCCAATTCTACTTGGAAGAAAGCCAAGAGGGACCTTCAAGCAATGAGCATGATATACCTGAATTGGAGAGTTCAACAGTTTGCTGATATGCTGGAGGTTGAGCGAGCCAAAAATGAGACTCTTAGTGCGGAAAATTTGAAACTGTGCATGGAGATAGGATTGCTCAGGCAAGCCATTCCTAAAGATGAGATTCCAAATGGGAATTCAAGGAAGTTGAGGACAAAAGAACTATGTAAAAAACCATCATTCCTTGAAGGTTATATCATTGGCGACATTAGAGCCAAAAGAGGTAAGGAAAAGATCATTGATGAAATAGGTGATGCTGTTGTGGAAGAACCAGCTGTGAAGAAGGAGAAGAAACAGATTGTTGCGCAACAAATAGGTGTGAGAAGGTTAAGGGTTGGAAAGTGTATGTCGCAGGTAAATGCAGAAAAGCTCAAGGAATATTTGTCCAAAGCTAGCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

19.58

Weight (kDa)

9.79

Isoelectric Point (pI)

40.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 417
Acc36I ACCTGC 2 cut(s) 454, 498
AciI CCGC 1 cut(s) 173
AclWI GGATC 1 cut(s) 10
AcsI RAATTY 2 cut(s) 178, 247
AgsI TTSAA 5 cut(s) 83, 119, 184, 252, 299
AjuI GAANNNNNNNTTGG 4 cut(s) 13, 45, 232, 264
AluBI AGCT 4 cut(s) 36, 386, 481, 503
AluI AGCT 4 cut(s) 36, 386, 481, 503
Alw26I GTCTC 1 cut(s) 155
AlwI GGATC 1 cut(s) 10
ApoI RAATTY 2 cut(s) 178, 247
AspLEI GCGC 1 cut(s) 418
AspS9I GGNCC 1 cut(s) 76
AsuHPI GGTGA 1 cut(s) 374
AsuNHI GCTAGC 1 cut(s) 503
AvaII GGWCC 1 cut(s) 76
BccI CCATC 1 cut(s) 295
BcoDI GTCTC 1 cut(s) 155
BfaI CTAG 1 cut(s) 504
BfuAI ACCTGC 2 cut(s) 454, 498
Bme18I GGWCC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 76
BmiI GGNNCC 1 cut(s) 77
BmsI GCATC 1 cut(s) 355
BmtI GCTAGC 1 cut(s) 507
BpmI CTGGAG 1 cut(s) 158
Bpu10I CCTNAGC 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 467
BsaBI GATNNNNATC 1 cut(s) 14
Bse3DI GCAATG 1 cut(s) 93
Bse8I GATNNNNATC 1 cut(s) 14
BseJI GATNNNNATC 1 cut(s) 14
BseMI GCAATG 1 cut(s) 93
BseMII CTCAG 1 cut(s) 223
BslFI GGGAC 1 cut(s) 89
BsmAI GTCTC 1 cut(s) 155
BsmFI GGGAC 1 cut(s) 89
Bsp143I GATC 2 cut(s) 15, 345
BspACI CCGC 1 cut(s) 173
BspCNI CTCAG 1 cut(s) 222
BspLI GGNNCC 1 cut(s) 77
BspMI ACCTGC 2 cut(s) 454, 498
BspOI GCTAGC 1 cut(s) 507
BspPI GGATC 1 cut(s) 10
BsrDI GCAATG 1 cut(s) 93
BssMI GATC 2 cut(s) 15, 345
Bst4CI ACNGT 2 cut(s) 123, 189
BstC8I GCNNGC 3 cut(s) 150, 216, 505
BstDEI CTNAG 2 cut(s) 167, 209
BstHHI GCGC 1 cut(s) 418
BstKTI GATC 2 cut(s) 18, 348
BstMAI GTCTC 1 cut(s) 155
BstMBI GATC 2 cut(s) 15, 345
BveI ACCTGC 2 cut(s) 454, 498
Cac8I GCNNGC 3 cut(s) 150, 216, 505
CfoI GCGC 1 cut(s) 418
Cfr13I GGNCC 1 cut(s) 76
CviAII CATG 2 cut(s) 94, 193
CviJI RGCY 8 cut(s) 36, 68, 152, 218, 326, 386, 481, 503
CviKI_1 RGCY 8 cut(s) 36, 68, 152, 218, 326, 386, 481, 503
DdeI CTNAG 2 cut(s) 167, 209
DpnI GATC 2 cut(s) 17, 347
DpnII GATC 2 cut(s) 15, 345
Eco47I GGWCC 1 cut(s) 76
EcoO109I RGGNCCY 1 cut(s) 76
EcoRI GAATTC 1 cut(s) 247
FaeI CATG 2 cut(s) 97, 196
FaiI YATR 7 cut(s) 95, 100, 134, 194, 277, 306, 458
FaqI GGGAC 1 cut(s) 89
FatI CATG 2 cut(s) 93, 192
FspBI CTAG 1 cut(s) 504
FspI TGCGCA 1 cut(s) 417
GlaI GCGC 1 cut(s) 417
GsuI CTGGAG 1 cut(s) 158
HhaI GCGC 1 cut(s) 418
Hin1II CATG 2 cut(s) 97, 196
Hin6I GCGC 1 cut(s) 416
HinP1I GCGC 1 cut(s) 416
HinfI GANTC 2 cut(s) 163, 235
HphI GGTGA 1 cut(s) 374
HpyAV CCTTC 4 cut(s) 89, 293, 388, 429
HpyCH4III ACNGT 2 cut(s) 123, 189
HpyCH4V TGCA 2 cut(s) 192, 473
HpyF3I CTNAG 2 cut(s) 167, 209
Hsp92II CATG 2 cut(s) 97, 196
HspAI GCGC 1 cut(s) 416
Kzo9I GATC 2 cut(s) 15, 345
LpnPI CCDG 7 cut(s) 46, 116, 122, 196, 396, 449, 493
LweI GCATC 1 cut(s) 355
MaeI CTAG 1 cut(s) 504
MaeIII GTNAC 1 cut(s) 38
MalI GATC 2 cut(s) 17, 347
MboI GATC 2 cut(s) 15, 345
MboII GAAGA 4 cut(s) 73, 389, 403, 412
MluCI AATT 4 cut(s) 49, 106, 178, 247
MlyI GAGTC 1 cut(s) 157
MmeI TCCRAC 1 cut(s) 427
MnlI CCTC 4 cut(s) 66, 133, 255, 326
MseI TTAA 1 cut(s) 440
MspA1I CMGCKG 2 cut(s) 36, 386
NdeII GATC 2 cut(s) 15, 345
NheI GCTAGC 1 cut(s) 503
NlaIII CATG 2 cut(s) 97, 196
NlaIV GGNNCC 1 cut(s) 77
NsbI TGCGCA 1 cut(s) 417
PfeI GAWTC 1 cut(s) 235
PleI GAGTC 1 cut(s) 157
PpsI GAGTC 1 cut(s) 157
PpuMI RGGWCCY 1 cut(s) 76
Psp5II RGGWCCY 1 cut(s) 76
PspN4I GGNNCC 1 cut(s) 77
PspPI GGNCC 1 cut(s) 76
PspPPI RGGWCCY 1 cut(s) 76
PvuII CAGCTG 2 cut(s) 36, 386
SaqAI TTAA 1 cut(s) 440
Sau3AI GATC 2 cut(s) 15, 345
Sau96I GGNCC 1 cut(s) 76
SchI GAGTC 1 cut(s) 157
SfaNI GCATC 1 cut(s) 355
SinI GGWCC 1 cut(s) 76
SmlI CTYRAG 1 cut(s) 482
SmoI CTYRAG 1 cut(s) 482
Sse9I AATT 4 cut(s) 49, 106, 178, 247
SsiI CCGC 1 cut(s) 173
SspI AATATT 1 cut(s) 491
SspMI CTAG 1 cut(s) 504
TaaI ACNGT 2 cut(s) 123, 189
TasI AATT 4 cut(s) 49, 106, 178, 247
TfiI GAWTC 1 cut(s) 235
Tru1I TTAA 1 cut(s) 440
Tru9I TTAA 1 cut(s) 440
TspDTI ATGAA 1 cut(s) 369
VpaK11BI GGWCC 1 cut(s) 76
XapI RAATTY 2 cut(s) 178, 247
XspI CTAG 1 cut(s) 504
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.