Rw0G020150

Plant mobile domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Contig00906
OG0000441
Physical Location & Seq
Reverse (-)
50627 .. 52229
1603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw0G020150.1

Sequence Viewer

Length: 924 bp
ATGATTTCAAATTCGGAGAAGAGATTACGGAACAATAATTACTTGATCGCAAAACAAATCCTAGTTCCTCCCCTGGAGGTCTTTCTTGAATTCATCTGGGTACCGCTATCAGAGTCTGACCTTTATCAAAGGTGCTTTATGGCAAAGAAGGAGTATCCCTATCTAGAGTACAGGTGTGATTTATTGAAGTTTGGGTGTGTAATTGCTCTGCCGTATTGGTTTTGTGAGCGGACTCTCTTCATTGAACCGATGAGAGGAAGGGAACAAATGGAACCGAAAATTGTGAAATGGAATTTGCTGGAACATTATGCTAGGATGAAAGTGGTCTCTATTCTTGAGATAGAGGTAAAGGAGAGAGATGAGGATCAGAGTACTAATGTTGTGCCTAGTGGTGAGAAGCATTTAGTTGAAATTGGGACTACAAGCGGTACAAAATCAAGAGAACAAAAAAATGCGACGGATTTTGATCCCAACAAGATGTTCCAGCTGTTACCGACCCAATTCTACTTGGAAGAAAGCCAAGAGGGACCTTCAAGCAATGAGAATGATATACCTGAATTGGAGAAAAGGGTTCAAGAGTTTGCTGATTTGCTGGAGGTTGAGCGAGCCAAAAATGAGACTCTTAGCAAGCCATTCCTAAATATGAGATTCCAAATGGGAATTCAAGTGTTGAGGACAAAAGAACTATGTAAAAAACCATCATTCCTTGAAGGTTATATCATTGGCGACATTAGAGCCAAAAGAGGTAAGGAAAAGATCATTGATGAAATAGGTGATGCTGTTGTGGAAGAACCAGCTGTGAAGAAGGAGAAGAAACAGATTGTTGTGCAACAAATAGGTGTGAGAAGGTTAAGGGTTGGAAAGTGTATGTCCCAGGTAAATGCAGAAAAGCTCGAGGAATATTTGTCCAAAGCTAGCAGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF1985 PMD

Protein Analysis

307

Amino Acids

35.89

Weight (kDa)

6.8

Isoelectric Point (pI)

48.12

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000441)

Species Orthologous Gene IDs
fragaria_vesca FvH4_1g25221 FvH4_2g35252 FvH4_5g07921 FvH4_5g28462
malus_domestica MD05G1260800.v1.1 MD07G1009100.v1.1 MD15G1218700.v1.1
pyrus_communis pycom06g12090 pycom06g12100 pycom13g29410 pycom14g00750 pycom14g00760 pycom17g09320
rosa_chinensis RchiOBHm_Chr1g0331351 RchiOBHm_Chr5g0012151 RchiOBHm_Chr5g0033751 RchiOBHm_Chr5g0050991 RchiOBHm_Chr6g0253451
rosa_laevigata RLG00000003481 RLG00000004801 RLG00000006482 RLG00000007938 RLG00000008591 RLG00000015997 RLG00000016551 RLG00000019935 RLG00000023215 RLG00000023450 RLG00000026296 RLG00000029174 RLG00000030924 RLG00000032897 RLG00000036108
rosa_multiflora Rmu_sc0000611.1_g000017 Rmu_sc0001084.1_g000012 Rmu_sc0001296.1_g000006 Rmu_sc0001306.1_g000031 Rmu_sc0001473.1_g000034 Rmu_sc0002806.1_g000024 Rmu_sc0004605.1_g000010 Rmu_sc0013864.1_g000011
rosa_roxburghii Rroxscaffold_7G00210800
rosa_rugosa Rorug05G0253300
rosa_samantha Rh1AG193700 Rh1BG004100 Rh1BG004200 Rh1DG121500 Rh2AG369300 Rh4BG319300 Rh4BG319400 Rh4CG334700 Rh4CG334800 Rh4DG097100 Rh4DG097200 Rh5AG009200 Rh5AG183100 Rh5BG347200 Rh5CG010100 Rh5CG074900 Rh5CG075000 Rh5CG103300 Rh5CG263100 Rh5CG263300 Rh5DG061600 Rh5DG061700 Rh5DG250100 Rh5DG250200 Rh5DG360300 Rh5DG481800 Rh6BG120200 Rh6CG118200 Rh6CG118300 Rh6CG118400 Rh6CG257400 Rh6DG106600 Rh6DG106700 Rh6DG106800 Rh7AG076400 Rh7AG368300 Rh7AG501100 Rh7BG428100 Rh7BG443600 Rh7BG472400 Rh7CG386600 Rh7CG386700 Rh7DG258200
rosa_wichuraiana Rw0G020150 Rw2G018580 Rw3G027670 Rw4G017220 Rw5G012220 Rw5G016600 Rw7G006450 Rw7G017450

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 909
Acc65I GGTACC 1 cut(s) 100
AccB1I GGYRCC 1 cut(s) 100
AccBSI CCGCTC 1 cut(s) 229
AciI CCGC 3 cut(s) 104, 229, 426
AclWI GGATC 2 cut(s) 372, 461
AcsI RAATTY 4 cut(s) 10, 89, 292, 660
AfaI GTAC 4 cut(s) 102, 170, 373, 430
AfiI CCNNNNNNNGG 1 cut(s) 254
AgsI TTSAA 9 cut(s) 9, 89, 187, 245, 410, 534, 575, 665, 710
AjnI CCWGG 2 cut(s) 72, 873
AjuI GAANNNNNNNTTGG 4 cut(s) 464, 496, 645, 677
AluBI AGCT 4 cut(s) 487, 797, 892, 914
AluI AGCT 4 cut(s) 487, 797, 892, 914
Alw26I GTCTC 2 cut(s) 331, 611
AlwI GGATC 2 cut(s) 372, 461
AlwNI CAGNNNCTG 1 cut(s) 116
Ama87I CYCGRG 1 cut(s) 893
ApoI RAATTY 4 cut(s) 10, 89, 292, 660
Asp718I GGTACC 1 cut(s) 100
AspS9I GGNCC 1 cut(s) 527
AsuHPI GGTGA 2 cut(s) 404, 785
AsuNHI GCTAGC 1 cut(s) 914
AvaI CYCGRG 1 cut(s) 893
AvaII GGWCC 1 cut(s) 527
BanI GGYRCC 1 cut(s) 100
BccI CCATC 1 cut(s) 706
BceAI ACGGC 1 cut(s) 196
BciT130I CCWGG 2 cut(s) 74, 875
BciVI GTATCC 1 cut(s) 165
BcoDI GTCTC 2 cut(s) 331, 611
BfaI CTAG 5 cut(s) 62, 164, 312, 387, 915
BfuAI ACCTGC 1 cut(s) 909
BfuI GTATCC 1 cut(s) 165
BmcAI AGTACT 1 cut(s) 373
Bme1390I CCNGG 2 cut(s) 74, 875
Bme18I GGWCC 1 cut(s) 527
BmeT110I CYCGRG 1 cut(s) 893
BmgT120I GGNCC 1 cut(s) 527
BmiI GGNNCC 3 cut(s) 102, 273, 528
BmrFI CCNGG 2 cut(s) 74, 875
BmsI GCATC 1 cut(s) 766
BmtI GCTAGC 1 cut(s) 918
BpmI CTGGAG 2 cut(s) 95, 614
BpuEI CTTGAG 1 cut(s) 356
BsaBI GATNNNNATC 2 cut(s) 363, 465
BsaI GGTCTC 1 cut(s) 331
BsaJI CCNNGG 2 cut(s) 72, 873
Bsc4I CCNNNNNNNGG 1 cut(s) 254
Bse3DI GCAATG 1 cut(s) 544
Bse8I GATNNNNATC 2 cut(s) 363, 465
BseBI CCWGG 2 cut(s) 74, 875
BseDI CCNNGG 2 cut(s) 72, 873
BseGI GGATG 1 cut(s) 321
BseJI GATNNNNATC 2 cut(s) 363, 465
BseLI CCNNNNNNNGG 1 cut(s) 254
BseMI GCAATG 1 cut(s) 544
BshNI GGYRCC 1 cut(s) 100
BsiHKCI CYCGRG 1 cut(s) 893
BslFI GGGAC 3 cut(s) 430, 540, 856
BslI CCNNNNNNNGG 1 cut(s) 254
BsmAI GTCTC 2 cut(s) 331, 611
BsmFI GGGAC 3 cut(s) 430, 540, 856
Bso31I GGTCTC 1 cut(s) 331
BsoBI CYCGRG 1 cut(s) 893
Bsp143I GATC 4 cut(s) 45, 364, 466, 756
BspACI CCGC 3 cut(s) 104, 229, 426
BspLI GGNNCC 3 cut(s) 102, 273, 528
BspMI ACCTGC 1 cut(s) 909
BspOI GCTAGC 1 cut(s) 918
BspPI GGATC 2 cut(s) 372, 461
BspT107I GGYRCC 1 cut(s) 100
BspTNI GGTCTC 1 cut(s) 331
BsrBI CCGCTC 1 cut(s) 229
BsrDI GCAATG 1 cut(s) 544
BssECI CCNNGG 2 cut(s) 72, 873
BssMI GATC 4 cut(s) 45, 364, 466, 756
Bst2UI CCWGG 2 cut(s) 74, 875
Bst6I CTCTTC 2 cut(s) 14, 242
BstC8I GCNNGC 3 cut(s) 606, 629, 916
BstDEI CTNAG 1 cut(s) 623
BstF5I GGATG 1 cut(s) 321
BstKTI GATC 4 cut(s) 48, 367, 469, 759
BstMAI GTCTC 2 cut(s) 331, 611
BstMBI GATC 4 cut(s) 45, 364, 466, 756
BstNI CCWGG 2 cut(s) 74, 875
BstSCI CCNGG 2 cut(s) 72, 873
BsuI GTATCC 1 cut(s) 165
BtsCI GGATG 1 cut(s) 321
BveI ACCTGC 1 cut(s) 909
Cac8I GCNNGC 3 cut(s) 606, 629, 916
CaiI CAGNNNCTG 1 cut(s) 116
Cfr13I GGNCC 1 cut(s) 527
Csp6I GTAC 4 cut(s) 101, 169, 372, 429
CviJI RGCY 8 cut(s) 487, 519, 608, 631, 737, 797, 892, 914
CviKI_1 RGCY 8 cut(s) 487, 519, 608, 631, 737, 797, 892, 914
CviQI GTAC 4 cut(s) 101, 169, 372, 429
DdeI CTNAG 1 cut(s) 623
DpnI GATC 4 cut(s) 47, 366, 468, 758
DpnII GATC 4 cut(s) 45, 364, 466, 756
Eam1104I CTCTTC 2 cut(s) 14, 242
EarI CTCTTC 2 cut(s) 14, 242
Eco31I GGTCTC 1 cut(s) 331
Eco47I GGWCC 1 cut(s) 527
Eco88I CYCGRG 1 cut(s) 893
EcoO109I RGGNCCY 1 cut(s) 527
EcoRI GAATTC 2 cut(s) 89, 660
EcoRII CCWGG 2 cut(s) 72, 873
FaiI YATR 7 cut(s) 140, 309, 551, 644, 688, 717, 869
FaqI GGGAC 3 cut(s) 430, 540, 856
FokI GGATG 1 cut(s) 328
FspBI CTAG 5 cut(s) 62, 164, 312, 387, 915
GsuI CTGGAG 2 cut(s) 95, 614
HinfI GANTC 4 cut(s) 113, 232, 619, 648
HphI GGTGA 2 cut(s) 404, 785
Hpy188I TCNGA 4 cut(s) 16, 112, 118, 369
Hpy188III TCNNGA 5 cut(s) 86, 164, 335, 438, 575
Hpy99I CGWCG 1 cut(s) 460
HpyAV CCTTC 6 cut(s) 142, 252, 540, 704, 799, 840
HpyCH4V TGCA 2 cut(s) 829, 884
HpyF3I CTNAG 1 cut(s) 623
KpnI GGTACC 1 cut(s) 104
Kzo9I GATC 4 cut(s) 45, 364, 466, 756
LweI GCATC 1 cut(s) 766
MaeI CTAG 5 cut(s) 62, 164, 312, 387, 915
MaeIII GTNAC 1 cut(s) 489
MalI GATC 4 cut(s) 47, 366, 468, 758
MbiI CCGCTC 1 cut(s) 229
MboI GATC 4 cut(s) 45, 364, 466, 756
MboII GAAGA 6 cut(s) 31, 229, 524, 800, 814, 823
MlyI GAGTC 3 cut(s) 122, 226, 613
MmeI TCCRAC 1 cut(s) 838
MseI TTAA 1 cut(s) 851
MspA1I CMGCKG 2 cut(s) 487, 797
MspR9I CCNGG 2 cut(s) 74, 875
MvaI CCWGG 2 cut(s) 74, 875
NdeII GATC 4 cut(s) 45, 364, 466, 756
NheI GCTAGC 1 cut(s) 914
NlaIV GGNNCC 3 cut(s) 102, 273, 528
PaeR7I CTCGAG 1 cut(s) 893
PfeI GAWTC 1 cut(s) 648
PleI GAGTC 3 cut(s) 121, 226, 613
PpsI GAGTC 3 cut(s) 121, 226, 613
PpuMI RGGWCCY 1 cut(s) 527
Psp5II RGGWCCY 1 cut(s) 527
Psp6I CCWGG 2 cut(s) 72, 873
PspGI CCWGG 2 cut(s) 72, 873
PspN4I GGNNCC 3 cut(s) 102, 273, 528
PspPI GGNCC 1 cut(s) 527
PspPPI RGGWCCY 1 cut(s) 527
PspXI VCTCGAGB 1 cut(s) 893
PsrI GAACNNNNNNTAC 2 cut(s) 23, 55
PstNI CAGNNNCTG 1 cut(s) 116
PvuII CAGCTG 2 cut(s) 487, 797
RsaI GTAC 4 cut(s) 102, 170, 373, 430
RsaNI GTAC 4 cut(s) 101, 169, 372, 429
SaqAI TTAA 1 cut(s) 851
Sau3AI GATC 4 cut(s) 45, 364, 466, 756
Sau96I GGNCC 1 cut(s) 527
ScaI AGTACT 1 cut(s) 373
SchI GAGTC 3 cut(s) 122, 226, 613
ScrFI CCNGG 2 cut(s) 74, 875
SfaNI GCATC 1 cut(s) 766
Sfr274I CTCGAG 1 cut(s) 893
SinI GGWCC 1 cut(s) 527
SlaI CTCGAG 1 cut(s) 893
SmlI CTYRAG 2 cut(s) 335, 893
SmoI CTYRAG 2 cut(s) 335, 893
SsiI CCGC 3 cut(s) 104, 229, 426
SspI AATATT 1 cut(s) 902
SspMI CTAG 5 cut(s) 62, 164, 312, 387, 915
StyD4I CCNGG 2 cut(s) 72, 873
TaqI TCGA 1 cut(s) 894
TatI WGTACW 2 cut(s) 168, 371
TfiI GAWTC 1 cut(s) 648
Tru1I TTAA 1 cut(s) 851
Tru9I TTAA 1 cut(s) 851
TspDTI ATGAA 4 cut(s) 82, 229, 332, 780
TspGWI ACGGA 2 cut(s) 43, 473
VpaK11BI GGWCC 1 cut(s) 527
XapI RAATTY 4 cut(s) 10, 89, 292, 660
XbaI TCTAGA 1 cut(s) 163
XhoI CTCGAG 1 cut(s) 893
XspI CTAG 5 cut(s) 62, 164, 312, 387, 915
ZrmI AGTACT 1 cut(s) 373
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.